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Comment: Comment: How do I change the title font size in ViolinPlot (Seurat)
1 day ago by Assa Yeroslaviz ★ 1.8k
1
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2
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162
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How do I change the title font size in ViolinPlot (Seurat)
Seurat Violin-Plot ggplot2 patchwork
1 day ago by Assa Yeroslaviz ★ 1.8k
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1
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203
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
2 days ago by Assa Yeroslaviz ★ 1.8k
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1
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163
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Comment: Comment: trying to count a pattern in my fastq file using bbduk
2 days ago by Assa Yeroslaviz ★ 1.8k
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1
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203
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
2 days ago by Assa Yeroslaviz ★ 1.8k
1
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5
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203
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UMI-Tools knee-method has great influence on the results of white list
single-cell whitelist UMI RNA UMI-Tools
updated 2 days ago by 19k • written 2 days ago by ★ 1.8k
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3
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163
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trying to count a pattern in my fastq file using bbduk
java bbduk bbmap fastq
updated 2 days ago by 142k • written 2 days ago by ★ 1.8k
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0
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435
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Comment: Comment: why renaming Idents in Seurat object doesn't work?
9 days ago by Assa Yeroslaviz ★ 1.8k
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3
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435
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why renaming Idents in Seurat object doesn't work?
Seurat RenameIdents R
9 days ago by Assa Yeroslaviz ★ 1.8k
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0
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435
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Answer: Answer: why renaming Idents in Seurat object doesn't work?
updated 13 days ago by 43k • written 14 days ago by ★ 1.8k
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0
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582
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Comment: Comment: Can index hopping lead to more reads in samples?
4 weeks ago by Assa Yeroslaviz ★ 1.8k
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0
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582
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Comment: Comment: Can index hopping lead to more reads in samples?
4 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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1
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582
views
Comment: Comment: Can index hopping lead to more reads in samples?
4 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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1
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582
views
Comment: Comment: Can index hopping lead to more reads in samples?
4 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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0
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582
views
Comment: Comment: Can index hopping lead to more reads in samples?
4 weeks ago by Assa Yeroslaviz ★ 1.8k
1
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9
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582
views
Can index hopping lead to more reads in samples?
index-hopping NovoSeq illumina NGS Seqeucning
4 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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0
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258
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What does it means, when 2-direction perturbed pathways are identified in the gage enrichment analysis?
r pathway go-enrichment gage
5 weeks ago by Assa Yeroslaviz ★ 1.8k
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0
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300
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Comment: Comment: annotating single-cell clusters from gene lists
10 weeks ago by Assa Yeroslaviz ★ 1.8k
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2
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300
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annotating single-cell clusters from gene lists
annotation FindAllMarkers Seurat cell-type
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 1.8k
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0
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144
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Correlating Chip-Seq and proteimics results
chip-seq correlations proteomics
3 months ago by Assa Yeroslaviz ★ 1.8k
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0
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201
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Understanding Homer output for makeTagDirectory
chip-seq peaks homer makeTagDirectory
3 months ago by Assa Yeroslaviz ★ 1.8k
3
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4
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582
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split sequences into their codons in a table
R fasta codon-table
3 months ago by Assa Yeroslaviz ★ 1.8k
1
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0
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582
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Answer: Answer: split sequences into their codons in a table
3 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
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163
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cross-correlation peak at position 0 when calculating ChIp-Seq
cross-correlation peak chip-seq phantompeak ChIPseeker
3 months ago by Assa Yeroslaviz ★ 1.8k
1
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1
reply
295
views
Annotating peak using Chipseeker for non-model organism
GenomicFeatures chipseq chipseeker annoDB TxDb
updated 3 months ago by 13k • written 3 months ago by ★ 1.8k
1
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8
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1.5k
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counts of cite-seq-count vs. cellrenager varies tremendously
citeseq-count cellranger cite-seq scRNA-seq
updated 4 months ago by 82k • written 9 months ago by ★ 1.8k
0
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0
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253
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extracting Uniprot IDs for Kegg pathways
mapping uniprot R kegg clusterprofiler
5 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
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605
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Comment: Comment: Plotting gene Expression per pathway
7 months ago by Assa Yeroslaviz ★ 1.8k
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1
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605
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Comment: Comment: Plotting gene Expression per pathway
7 months ago by Assa Yeroslaviz ★ 1.8k
1
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4
replies
605
views
Plotting gene Expression per pathway
GO-enrichment gene-expression R ggplot RNA-seq
7 months ago by Assa Yeroslaviz ★ 1.8k
3
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6
replies
879
views
summarize consecutive columns over a data frame
tidyverse r offtopic
updated 7 months ago by 43k • written 8 months ago by ★ 1.8k
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1
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879
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Comment: Comment: summarize consecutive columns over a data frame
8 months ago by Assa Yeroslaviz ★ 1.8k
1
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3
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822
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trajectory-like graph for a data frame
trajectory rna-seq tidyverse r velocity
updated 8 months ago by ★ 16k • written 8 months ago by ★ 1.8k
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1
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822
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Comment: Comment: trajectory-like graph for a data frame
8 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
1.5k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
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1.5k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
602
views
Comment: Comment: WGS sequencing data based proteomics analysis
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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4
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602
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WGS sequencing data based proteomics analysis
workflow UniProt proteomics WGS RNA-Seq
updated 9 months ago by ★ 1.1k • written 9 months ago by ★ 1.8k
1
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1
reply
6.6k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
6.6k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
10 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
6.6k
views
Answer: Answer: scRNA-seq CITE-seq-count bioinformatics
10 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
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410
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Comment: Comment: Checking significance in trend of time-series analysis for count data
10 months ago by Assa Yeroslaviz ★ 1.8k
0
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2
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410
views
Checking significance in trend of time-series analysis for count data
glm RNA-Seq time-series
10 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
879
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
10 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
879
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
10 months ago by Assa Yeroslaviz ★ 1.8k
1
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5
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879
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annotating single-cell cluster from Drosophila melanogaster using SingleR?
SingleR celldex cell-type-annotations scRNA
updated 10 months ago by ★ 1.6k • written 10 months ago by ★ 1.8k
2
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2
replies
909
views
6 follow
Why runing scDblFinder before and after removing low QC cells gives different results
singleCellExperiment scDblFinder SMART-Seq
updated 5 months ago by ▴ 210 • written 10 months ago by ★ 1.8k
0
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1
reply
1.2k
views
what is the difference between FindVariableFeatures and FindAllMarkers?
Seurat single-cell FindVariableFeatures FindAllMarkers RNA-Seq
updated 11 months ago by 13k • written 11 months ago by ★ 1.8k
5
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2
replies
651
views
ERCC normalization within DESeq2
normalization ERCC size.factors DESeq2
updated 12 months ago by 82k • written 12 months ago by ★ 1.8k
8
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5
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2.3k
views
DESeq2 model matrix not full rank
full-rank model-matrix deseq2
updated 12 months ago by 142k • written 2.9 years ago by ★ 1.8k
568 results • Page 1 of 12
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