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comments
0
votes
0
replies
477
views
Comment:
Comment: VCF conservation into Treemix
4 months ago by
reza
▴ 300
0
votes
0
replies
868
views
Comment:
Comment: BWA Index Referencing Failed. Possible Reason and Solutions?
4 months ago by
reza
▴ 300
0
votes
0
replies
320
views
bootstraped treemix show no migration event
Treemix
Bootstrap
4 months ago by
reza
▴ 300
0
votes
2
replies
477
views
VCF conservation into Treemix
Treemix
Plink
VCF
4 months ago by
reza
▴ 300
0
votes
0
replies
836
views
Comment:
Comment: how to filter a multi-sample VCF file based on 0/0 genotype numbers
8 months ago by
reza
▴ 300
0
votes
1
reply
836
views
Comment:
Comment: how to filter a multi-sample VCF file based on 0/0 genotype numbers
8 months ago by
reza
▴ 300
2
votes
4
replies
836
views
how to filter a multi-sample VCF file based on 0/0 genotype numbers
genotype
VCF
CNV
8 months ago by
reza
▴ 300
0
votes
2
replies
1.1k
views
pooled-heterozygosity calculation
VCF
Population-Genetics
WGS
Selective-sweep
updated 11 months ago by
wonde2000
• 0 • written 2.5 years ago by
reza
▴ 300
0
votes
1
reply
759
views
Prolem with Dsuite program for introgression test
Introgression
Dsuite
updated 17 months ago by
Ken
• 0 • written 20 months ago by
reza
▴ 300
0
votes
0
replies
373
views
How to determine a threshold for fdm parameter to identify introgressed regions on genome
WGS
Introgression
Dsuite
20 months ago by
reza
▴ 300
0
votes
1
reply
808
views
ERROR: Variant physical position must be monotonically increasing
XPEHH
selscan
updated 2.4 years ago by
LauferVA
4.2k • written 2.4 years ago by
reza
▴ 300
0
votes
0
replies
603
views
different windows and snps for same vcf file while i calculate genetic diversity using vcftools
vcftools
pi
2.4 years ago by
reza
▴ 300
0
votes
0
replies
388
views
Pooled-heterozigosity (SECTION2)
Hp
VCF
Pooled_Heterozygosity
2.4 years ago by
reza
▴ 300
0
votes
0
replies
1.3k
views
Comment:
Comment: Annotation of vcftools fst output using GTF or GFF
2.5 years ago by
reza
▴ 300
0
votes
1
reply
1.3k
views
Comment:
Comment: Annotation of vcftools fst output using GTF or GFF
2.5 years ago by
reza
▴ 300
2
votes
4
replies
1.3k
views
Annotation of vcftools fst output using GTF or GFF
fst
vcftools
annotation
GTF
2.5 years ago by
reza
▴ 300
1
vote
1
reply
2.8k
views
Comment:
Comment: Bam file depth of coverage and statstics
2.5 years ago by
reza
▴ 300
0
votes
1
reply
2.8k
views
Comment:
Comment: Bam file depth of coverage and statstics
2.5 years ago by
reza
▴ 300
0
votes
0
replies
3.5k
views
Comment:
Comment: GATK-Allele frequency
2.5 years ago by
reza
▴ 300
0
votes
1
reply
2.8k
views
Comment:
Comment: Bam file depth of coverage and statstics
2.5 years ago by
reza
▴ 300
1
vote
1
reply
1.7k
views
Comment:
Comment: ABBA BABA test for two population
2.5 years ago by
reza
▴ 300
1
vote
4
replies
1.7k
views
ABBA BABA test for two population
introgression
genetics
Population
ABAB-BABA
updated 2.5 years ago by
Vic
▴ 100 • written 2.5 years ago by
reza
▴ 300
0
votes
0
replies
1.1k
views
Comment:
Comment: How to filter GATK vcf file using other programs
2.7 years ago by
reza
▴ 300
0
votes
1
reply
1.1k
views
Comment:
Comment: How to filter GATK vcf file using other programs
2.7 years ago by
reza
▴ 300
0
votes
4
replies
1.1k
views
How to filter GATK vcf file using other programs
VCF
Filtration
GATK
2.7 years ago by
reza
▴ 300
1
vote
1
reply
1.0k
views
Adding read groups to mark duplicated bam file
Picard
GATK
updated 2.7 years ago by
vdauwera
★ 1.2k • written 2.7 years ago by
reza
▴ 300
0
votes
0
replies
1.8k
views
Comment:
Comment: how to removed the first two nucleotides from a fastq file (single-end)
2.9 years ago by
reza
▴ 300
1
vote
0
replies
1.3k
views
Comment:
Comment: Problem with limma in microarray analysis
2.9 years ago by
reza
▴ 300
0
votes
1
reply
1.3k
views
Comment:
Comment: Problem with limma in microarray analysis
2.9 years ago by
reza
▴ 300
0
votes
1
reply
1.3k
views
Comment:
Comment: Problem with limma in microarray analysis
3.0 years ago by
reza
▴ 300
5
votes
6
replies
1.3k
views
Problem with limma in microarray analysis
limma
microarray
R
2.9 years ago by
reza
▴ 300
1
vote
7
replies
14k
views
A problem with download SRA using SRA toolkit
SRAtoolkit
NCBI
SRA
updated 10 months ago by
Ram
43k • written 4.2 years ago by
reza
▴ 300
0
votes
1
reply
1.8k
views
Comment:
Comment: big loss after markduplication
3.1 years ago by
reza
▴ 300
0
votes
0
replies
1.8k
views
Comment:
Comment: big loss after markduplication
3.1 years ago by
reza
▴ 300
0
votes
0
replies
1.8k
views
Comment:
Comment: big loss after markduplication
3.1 years ago by
reza
▴ 300
0
votes
1
reply
1.8k
views
Comment:
Comment: big loss after markduplication
3.1 years ago by
reza
▴ 300
0
votes
1
reply
1.8k
views
Comment:
Comment: big loss after markduplication
3.1 years ago by
reza
▴ 300
1
vote
10
replies
1.8k
views
big loss after markduplication
MarkDuplicates
Re-sequencing
Picard
updated 3.1 years ago by
David Parry
▴ 130 • written 3.1 years ago by
reza
▴ 300
1
vote
1
reply
738
views
variant calling using masked reference genome
Bowtie2
Reference Genome
Variant Calling
3.2 years ago by
reza
▴ 300
0
votes
1
reply
1.4k
views
Comment:
C: error in running Combat function
3.3 years ago by
reza
▴ 300
0
votes
1
reply
1.4k
views
Comment:
C: error in running Combat function
3.3 years ago by
reza
▴ 300
0
votes
1
reply
1.4k
views
Comment:
C: error in running Combat function
3.3 years ago by
reza
▴ 300
0
votes
6
replies
1.4k
views
error in running Combat function
R
sva
Combat
R studio
3.3 years ago by
reza
▴ 300
0
votes
0
replies
706
views
Meta-Analysis of Microarray data (Afyymetrix)
Meta-Analysis
Microarray
Affymetrix
R
3.8 years ago by
reza
▴ 300
0
votes
0
replies
567
views
extraction of scaffolds from SOAPdenovo output
next-gen
Assembly
soapdenovo
scaffold
3.9 years ago by
reza
▴ 300
0
votes
1
reply
14k
views
Comment:
C: A problem with download SRA using SRA toolkit
4.2 years ago by
reza
▴ 300
0
votes
0
replies
7.0k
views
Comment:
C: Obtain one vcf file of shared SNPs from input files with different samples using
updated 4.4 years ago by
Ram
43k • written 6.8 years ago by
reza
▴ 300
0
votes
2
replies
782
views
Comment:
C: Multiple genome comparison for new genetic markers
4.5 years ago by
reza
▴ 300
0
votes
1
reply
1.1k
views
Comment:
C: Issue with Bowtie2 mapping
4.7 years ago by
reza
▴ 300
0
votes
1
reply
1.1k
views
Comment:
C: Issue with Bowtie2 mapping
4.8 years ago by
reza
▴ 300
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