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148
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Mapping difference with BWA
variant-calling samtools bam BWA genomics
updated 2 days ago by 82k • written 2 days ago by • 0
1
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1
reply
187
views
geom_bar issue in ggplot2 with xlim()
geom_bar ggplot2 statistics R
updated 5 days ago by 82k • written 5 days ago by • 0
0
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3
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463
views
How to identify gaps in a genome?
awk seqkit assembly fasta genome
updated 4 weeks ago by 6.4k • written 5 weeks ago by • 0
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0
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463
views
Comment: Comment: How to identify gaps in a genome?
5 weeks ago by rj.rezwan • 0
3
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1
reply
301
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how to change the gene header names in a fasta file?
fasta bioawk awk seqkit
updated 6 weeks ago by 44k • written 6 weeks ago by • 0
0
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0
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343
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Comment: Comment: kmer analysis for genome size estimation
7 weeks ago by rj.rezwan • 0
0
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0
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343
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Comment: Comment: kmer analysis for genome size estimation
7 weeks ago by rj.rezwan • 0
0
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4
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343
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kmer analysis for genome size estimation
kmer merqury allotetraploid pacbio hifiasm
7 weeks ago by rj.rezwan • 0
0
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0
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459
views
Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
11 weeks ago by rj.rezwan • 0
0
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1
reply
459
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Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
11 weeks ago by rj.rezwan • 0
0
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1
reply
459
views
Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
11 weeks ago by rj.rezwan • 0
0
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6
replies
459
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why the file is low after combining the Hi-C reads using Arima genomics pipeline of mapping
bwa mapping genome samtools plants
11 weeks ago by rj.rezwan • 0
0
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0
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147
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issue with the Arima genomics pipeline for Hi-C scaffolding
plant pacbio assembly genome Hi-C
11 weeks ago by rj.rezwan • 0
1
vote
1
reply
251
views
Is there any database for transposable elements in cactus plants
EDTA transposable-elements
updated 12 weeks ago by 44k • written 12 weeks ago by • 0
0
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0
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551
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Comment: Comment: allele matching between identical genotypes
3 months ago by rj.rezwan • 0
0
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4
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551
views
allele matching between identical genotypes
haplotyping plink vcf GATK varaint
3 months ago by rj.rezwan • 0
0
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0
replies
551
views
Comment: Comment: allele matching between identical genotypes
3 months ago by rj.rezwan • 0
0
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1
reply
382
views
how to run the compare_genomes for comparative analysis
genome orthofinder evolution
updated 5 months ago by ★ 2.0k • written 5 months ago by • 0
0
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2
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971
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Comment: Comment: How to download multiple genome files using command line (MacOS) using datasets
5 months ago by rj.rezwan • 0
0
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0
replies
1.1k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
7 months ago by rj.rezwan • 0
0
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1
reply
1.1k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
7 months ago by rj.rezwan • 0
0
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1
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1.1k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
updated 7 months ago by 44k • written 7 months ago by • 0
0
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1
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1.1k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
7 months ago by rj.rezwan • 0
0
votes
1
reply
1.1k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
7 months ago by rj.rezwan • 0
1
vote
10
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1.1k
views
file conversion from gtf to gff3 for evidence modeler
gff3 stringtie gtf
7 months ago by rj.rezwan • 0
0
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1
reply
749
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Comment: Comment: samtools produces truncated error during merging the bam files
7 months ago by rj.rezwan • 0
2
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3
replies
749
views
samtools produces truncated error during merging the bam files
bam samtools HISAT
updated 7 months ago by 44k • written 7 months ago by • 0
2
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5
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985
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 7 months ago by 44k • written 8 months ago by • 0
0
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1
reply
891
views
Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
9 months ago by rj.rezwan • 0
0
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3
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891
views
investigate the inversions in comparison of assembled genome with reference genome
genome assembly scaffold ragtag dotplot
updated 9 months ago by ▴ 520 • written 9 months ago by • 0
0
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1
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1.0k
views
Comment: Comment: How to find the coverage of the assembled contigs of the PacBio long reads?
9 months ago by rj.rezwan • 0
2
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3
replies
1.0k
views
How to find the coverage of the assembled contigs of the PacBio long reads?
PacBio assembly coverage
updated 9 months ago by ★ 1.4k • written 9 months ago by • 0
0
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0
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722
views
Comment: Comment: How to make the SNP density plot using hapmap file
10 months ago by rj.rezwan • 0
1
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2
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722
views
How to make the SNP density plot using hapmap file
vcf haplotype hapmap CMplot
10 months ago by rj.rezwan • 0
0
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0
replies
345
views
How to perform a phylogenetic analysis from a vcf file
variants haplotyping phylogeny vcf
11 months ago by rj.rezwan • 0
4
votes
2
replies
945
views
How to calculate kinship matrix table from vcf file
variants haplotyping kinship heatmap
updated 11 months ago by 10k • written 11 months ago by • 0
0
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0
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301
views
how to retrieve the chunk of every chromosome from a vcf file
haplotyping varaints
12 months ago by rj.rezwan • 0
0
votes
0
replies
692
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
13 months ago by rj.rezwan • 0
0
votes
0
replies
692
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
13 months ago by rj.rezwan • 0
2
votes
6
replies
692
views
how to make a header name in a haplotyping script of gatk?
headername gatk haplotypecalling
13 months ago by rj.rezwan • 0
0
votes
1
reply
692
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
13 months ago by rj.rezwan • 0
0
votes
1
reply
1.0k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
updated 13 months ago by 44k • written 13 months ago by • 0
0
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1
reply
1.0k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
13 months ago by rj.rezwan • 0
0
votes
1
reply
1.0k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
13 months ago by rj.rezwan • 0
2
votes
7
replies
1.0k
views
why CombineGCVFs in gatk not showing all the samples name?
haplotypecalling CombineGVCFs GATK
updated 13 months ago by 44k • written 13 months ago by • 0
0
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1
reply
1.0k
views
Comment: Comment: error with CombineGVCFs to join large number of files
13 months ago by rj.rezwan • 0
6
votes
5
replies
1.0k
views
error with CombineGVCFs to join large number of files
haplotypecalling CombineGVCFs GATK
13 months ago by rj.rezwan • 0
1
vote
1
reply
435
views
Why GATK is slow with haplotypecalling
GATK HaplotypeCalling
updated 14 months ago by 162k • written 14 months ago by • 0
0
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0
replies
1.4k
views
Comment: Comment: GATK error of Argument --emit-ref-confidence
15 months ago by rj.rezwan • 0
0
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1
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1.4k
views
Comment: Comment: GATK error of Argument --emit-ref-confidence
15 months ago by rj.rezwan • 0
85 results • Page 1 of 2
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