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354
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Comment: Comment: Help related to HTSEq usage specific for downstream DEXSeq analysis
4 months ago by Barry Digby ★ 1.3k
1
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0
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522
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Answer: Answer: Salmon quant with netflow nf-core/rnaseq -r 3.13.2
4 months ago by Barry Digby ★ 1.3k
0
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0
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553
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Comment: Comment: Opinion on miRNA pipeline
5 months ago by Barry Digby ★ 1.3k
0
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1
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553
views
Comment: Comment: Opinion on miRNA pipeline
5 months ago by Barry Digby ★ 1.3k
0
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0
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387
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Comment: Comment: error uploading gct file to gsea
6 months ago by Barry Digby ★ 1.3k
1
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0
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391
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Answer: Answer: How to implement neoantigen sequences using WES data?
7 months ago by Barry Digby ★ 1.3k
3
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1
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1.0k
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Answer: Answer: Unable to save plots in R using jpeg() or png()
7 months ago by Barry Digby ★ 1.3k
0
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0
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630
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
7 months ago by Barry Digby ★ 1.3k
0
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1
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630
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Answer: Answer: I cannot obtain summary alignment with Bowtie2
7 months ago by Barry Digby ★ 1.3k
0
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0
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695
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Comment: Comment: Normal vs Tumor - Kaplan Meier Survival Analysis
updated 7 months ago by 44k • written 7 months ago by ★ 1.3k
1
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1
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875
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Answer: Answer: identify DEGs across all conditions and per specific conditions
7 months ago by Barry Digby ★ 1.3k
0
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1
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752
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Comment: Comment: obtaining circular RNAs' sequences from circBase
7 months ago by Barry Digby ★ 1.3k
1
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1
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752
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Answer: Answer: obtaining circular RNAs' sequences from circBase
7 months ago by Barry Digby ★ 1.3k
4
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0
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699
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Answer: Answer: Identifying common DEGs among multiple datasets
8 months ago by Barry Digby ★ 1.3k
2
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0
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3.4k
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Answer: Answer: Running python script in slurm using conda environment
8 months ago by Barry Digby ★ 1.3k
3
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0
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1.3k
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
8 months ago by Barry Digby ★ 1.3k
0
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1
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1.0k
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Comment: Comment: No differentially expressed genes after multiple testing correction in mice
12 months ago by Barry Digby ★ 1.3k
0
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1
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639
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Comment: Comment: Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal
13 months ago by Barry Digby ★ 1.3k
0
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0
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1.5k
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Answer: Answer: How to run prepDE.py3?
13 months ago by Barry Digby ★ 1.3k
0
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0
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1.7k
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Answer: Answer: Unusual FastQC sequence distribution from small RNA seq
16 months ago by Barry Digby ★ 1.3k
2
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1
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816
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Answer: Answer: How do I extract gene names from different portions of my heatmap?
20 months ago by Barry Digby ★ 1.3k
1
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1
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677
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Comment: Comment: circular RNA analysis workflow
21 months ago by Barry Digby ★ 1.3k
0
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5
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2.3k
views
Missing gene symbols in bustools output
bustools scanpy kallisto single-cell scRNA
updated 22 months ago by • 0 • written 4.3 years ago by ★ 1.3k
1
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1
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3.3k
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Comment: Comment: error while testing nextflow with --genome GRCh38
22 months ago by Barry Digby ★ 1.3k
1
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0
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686
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Answer: Answer: CIRIexplorer2 annotate
23 months ago by Barry Digby ★ 1.3k
0
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1
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7.2k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
2.1 years ago by Barry Digby ★ 1.3k
0
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0
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7.2k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
2.1 years ago by Barry Digby ★ 1.3k
0
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1
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7.2k
views
Comment: Comment: TCGA transcriptome data to R (DESeq2)
2.1 years ago by Barry Digby ★ 1.3k
16
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9
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7.2k
views
Tutorial: TCGA transcriptome data to R (DESeq2)
TCGA GDC DESeq2
updated 23 months ago by ▴ 70 • written 2.5 years ago by ★ 1.3k
2
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0
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1.2k
views
Comment: Comment: how does annotate circular RNA ?
2.5 years ago by Barry Digby ★ 1.3k
1
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1
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1.2k
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Answer: Answer: how does annotate circular RNA ?
2.5 years ago by Barry Digby ★ 1.3k
3
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0
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3.7k
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Answer: Answer: need some help on how to use DESeq2 for TCGA data
2.5 years ago by Barry Digby ★ 1.3k
3
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1
reply
978
views
Answer: Answer: GEOquery: unable to fetch raw CEL files
2.6 years ago by Barry Digby ★ 1.3k
0
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0
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3.1k
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Answer: Answer: BUSCO installation and run
2.8 years ago by Barry Digby ★ 1.3k
1
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0
replies
3.3k
views
Comment: Comment: Add NES value to GSEA plot
2.9 years ago by Barry Digby ★ 1.3k
1
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1
reply
2.3k
views
Comment: Comment: TCGA library type information
3.0 years ago by Barry Digby ★ 1.3k
0
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1
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2.3k
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Comment: Comment: TCGA library type information
3.0 years ago by Barry Digby ★ 1.3k
3
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0
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1.7k
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Comment: C: Getting standard 12-column format for a list of genes
3.2 years ago by Barry Digby ★ 1.3k
0
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0
replies
817
views
Comment: C: how to annotate Circular RNA gene type?
3.2 years ago by Barry Digby ★ 1.3k
1
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1
reply
817
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Comment: C: how to annotate Circular RNA gene type?
3.2 years ago by Barry Digby ★ 1.3k
0
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1
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2.9k
views
Comment: C: nextflow set tuple issue
3.2 years ago by Barry Digby ★ 1.3k
4
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1
reply
2.9k
views
Answer: A: nextflow set tuple issue
3.2 years ago by Barry Digby ★ 1.3k
1
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0
replies
9.8k
views
Comment: C: How to plot GSEA result?
3.2 years ago by Barry Digby ★ 1.3k
0
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1
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2.9k
views
Comment: C: Which adapters to use for trimming?
3.3 years ago by Barry Digby ★ 1.3k
0
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1
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2.9k
views
Comment: C: Which adapters to use for trimming?
3.3 years ago by Barry Digby ★ 1.3k
2
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1
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1.7k
views
Answer: A: How to remove X & Y chromosome genes from RNAseq data
3.4 years ago by Barry Digby ★ 1.3k
0
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1
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1.7k
views
Comment: C: How to remove X & Y chromosome genes from RNAseq data
3.4 years ago by Barry Digby ★ 1.3k
1
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0
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9.8k
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Comment: C: How to plot GSEA result?
3.4 years ago by Barry Digby ★ 1.3k
0
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0
replies
1.9k
views
Comment: C: TCGA gene and mirna expression value
3.4 years ago by Barry Digby ★ 1.3k
0
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0
replies
1.6k
views
Comment: C: Why is mapper.pl from mirdeep2 producing an empty mapping file?
3.4 years ago by Barry Digby ★ 1.3k
144 results • Page 1 of 3
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