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How to calculate reliable Ka/Ks or dN/dS ratio for genes of interest from VCF file
dnds kaks VCF
13 days ago by rohitsatyam102 ▴ 850
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6.0k
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Comment: Comment: How to know synonymous and non-synonymous SNPs from transcriptome sequencing
13 days ago by rohitsatyam102 ▴ 850
4
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4
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504
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Why number of interactions decreased in current string database for plasmodium
string interactions ppi
updated 26 days ago by ▴ 80 • written 27 days ago by ▴ 850
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1
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504
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Comment: Comment: Why number of interactions decreased in current string database for plasmodium
27 days ago by rohitsatyam102 ▴ 850
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344
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Comment: Comment: Coverage observed in introns in the Knockdown genes but not in knockout genes
5 weeks ago by rohitsatyam102 ▴ 850
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344
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Comment: Comment: Coverage observed in introns in the Knockdown genes but not in knockout genes
6 weeks ago by rohitsatyam102 ▴ 850
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4
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344
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Coverage observed in introns in the Knockdown genes but not in knockout genes
RNA-seq STAR IGV
5 weeks ago by rohitsatyam102 ▴ 850
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1
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662
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Comment: Comment: How to scrape this MPMP database?
3 months ago by rohitsatyam102 ▴ 850
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1
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662
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Comment: Comment: How to scrape this MPMP database?
3 months ago by rohitsatyam102 ▴ 850
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0
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662
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Comment: Comment: How to scrape this MPMP database?
3 months ago by rohitsatyam102 ▴ 850
0
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0
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662
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Comment: Comment: How to scrape this MPMP database?
3 months ago by rohitsatyam102 ▴ 850
0
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1
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662
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Comment: Comment: How to scrape this MPMP database?
3 months ago by rohitsatyam102 ▴ 850
4
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10
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662
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How to scrape this MPMP database?
rvest html web-scrapping
updated 3 months ago by 43k • written 3 months ago by ▴ 850
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0
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382
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Tutorial: Making Tile plots to show Synonymous Non-Synonymous mutation fraction
mutation ggplotify geom_tile ggplot2
5 months ago by rohitsatyam102 ▴ 850
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479
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Tutorial: Using easyPubMed and scholar package to get all citations of your paper
scholar easyPubMed
6 months ago by rohitsatyam102 ▴ 850
0
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1
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629
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Comment: Comment: X-axis order changes in Mirrored Stacked Bar Plot
6 months ago by rohitsatyam102 ▴ 850
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4
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629
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X-axis order changes in Mirrored Stacked Bar Plot
ggplot2
updated 6 months ago by ★ 2.0k • written 6 months ago by ▴ 850
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1.1k
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Comment: Comment: Computing Tajima's D from haploid SNPs
6 months ago by rohitsatyam102 ▴ 850
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0
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3.5k
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Comment: Comment: dN/dS ratio from .vcf file
6 months ago by rohitsatyam102 ▴ 850
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0
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2.4k
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Comment: Comment: Use vcf files for dN/dS calculations
6 months ago by rohitsatyam102 ▴ 850
0
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1
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2.4k
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Comment: Comment: Use vcf files for dN/dS calculations
6 months ago by rohitsatyam102 ▴ 850
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0
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87k
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Comment: Comment: Selecting Random Pairs From Fastq?
7 months ago by rohitsatyam102 ▴ 850
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1
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494
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Choosing background for ORA using scrnaseq
scRNA-seq RNA-seq ORA
updated 8 months ago by 43k • written 8 months ago by ▴ 850
2
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1
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453
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Producing Bulk samples from 10X data
rnaseq scrnaseq deseq2 bulk seurat
updated 8 months ago by 82k • written 8 months ago by ▴ 850
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733
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Comment: Comment: Perform Primer to Primer comparison to see and show if the primers produced are
8 months ago by rohitsatyam102 ▴ 850
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2
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733
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Blog: Perform Primer to Primer comparison to see and show if the primers produced are new or 100% similar to published primers
Primers emboss needle
8 months ago by rohitsatyam102 ▴ 850
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0
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1.3k
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Comment: Comment: CellRanger output more cells than specified using --force-cells? Why?
8 months ago by rohitsatyam102 ▴ 850
0
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1
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1.3k
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Comment: Comment: CellRanger output more cells than specified using --force-cells? Why?
8 months ago by rohitsatyam102 ▴ 850
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0
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1.3k
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Comment: Comment: CellRanger output more cells than specified using --force-cells? Why?
8 months ago by rohitsatyam102 ▴ 850
1
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5
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1.3k
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CellRanger output more cells than specified using --force-cells? Why?
scRNA-seq cellranger
8 months ago by rohitsatyam102 ▴ 850
0
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0
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1.2k
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Comment: Comment: Shannon's Entropy by Sliding Window in R
11 months ago by rohitsatyam102 ▴ 850
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0
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1.7k
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Comment: Comment: IQ-TREE stuck in selecting a substitution model with ModelFinder
11 months ago by rohitsatyam102 ▴ 850
0
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1
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1.7k
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Comment: Comment: IQ-TREE stuck in selecting a substitution model with ModelFinder
11 months ago by rohitsatyam102 ▴ 850
0
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0
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2.0k
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Comment: Comment: Extract sequence subset from multiple sequence alignment based on position in a
12 months ago by rohitsatyam102 ▴ 850
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0
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2.2k
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Comment: Comment: CNVKit for unmatched tumor-only WGS samples
14 months ago by rohitsatyam102 ▴ 850
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0
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735
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Comment: Comment: driver genes per sample or per group?
14 months ago by rohitsatyam102 ▴ 850
0
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1
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494
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bcftools unable to tag poor variant calls properly
bcftools gatk vafator
updated 10 months ago by 43k • written 14 months ago by ▴ 850
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1
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3.1k
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Comment: Comment: Where is the documentation for PacBio tool bam2fastx?
14 months ago by rohitsatyam102 ▴ 850
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0
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1.2k
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Comment: Comment: Tool to combine Germline Variant call from different variant callers
14 months ago by rohitsatyam102 ▴ 850
0
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0
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9.0k
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Comment: Comment: Picard Exception: Illegal Mate State
15 months ago by rohitsatyam102 ▴ 850
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1
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1.2k
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Comment: Comment: Tool to combine Germline Variant call from different variant callers
15 months ago by rohitsatyam102 ▴ 850
0
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3
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1.2k
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Tool to combine Germline Variant call from different variant callers
haplotypecaller gatk snps
14 months ago by rohitsatyam102 ▴ 850
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0
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14k
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Comment: Comment: How to filter/view reads mapped to multiple locations using samtools or pysam
16 months ago by rohitsatyam102 ▴ 850
0
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0
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384
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Queries regarding SARS-CoV2 GISAID Genomes Submission
wf-artic COVID GISAID
18 months ago by rohitsatyam102 ▴ 850
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0
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1.7k
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Comment: Comment: how to pass trimmed fastP output to bwa in Nextflow
18 months ago by rohitsatyam102 ▴ 850
0
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0
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1.7k
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Comment: Comment: how to pass trimmed fastP output to bwa in Nextflow
18 months ago by rohitsatyam102 ▴ 850
6
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5
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1.7k
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how to pass trimmed fastP output to bwa in Nextflow
fastp bwa nextflow
18 months ago by rohitsatyam102 ▴ 850
0
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1
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1.7k
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Comment: Comment: how to pass trimmed fastP output to bwa in Nextflow
18 months ago by rohitsatyam102 ▴ 850
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0
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2.2k
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Comment: Comment: bcl2fastq dumps most of the reads as undetermined
18 months ago by rohitsatyam102 ▴ 850
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0
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2.2k
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Comment: Comment: bcl2fastq dumps most of the reads as undetermined
18 months ago by rohitsatyam102 ▴ 850
224 results • Page 1 of 5
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