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Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
7 days ago by Chris Dean ▴ 410
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675
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Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
8 days ago by Chris Dean ▴ 410
0
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1
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675
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Answer: Answer: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
9 days ago by Chris Dean ▴ 410
0
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1
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675
views
Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
12 days ago by Chris Dean ▴ 410
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1
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283
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Comment: Comment: CCA with random effects model
6 weeks ago by Chris Dean ▴ 410
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0
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206
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Comment: Comment: Difference in relative abundance between MicrobiomeDB and r phyloseq
7 weeks ago by Chris Dean ▴ 410
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1
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467
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Comment: Comment: Differential express genes in imbalance groups
8 weeks ago by Chris Dean ▴ 410
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0
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707
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
9 weeks ago by Chris Dean ▴ 410
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1
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707
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
9 weeks ago by Chris Dean ▴ 410
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0
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287
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Comment: Comment: UMI and index sequence in RNA-seq data
12 weeks ago by Chris Dean ▴ 410
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0
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414
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Comment: Comment: How to do DESeq2 on Kallisto Data
3 months ago by Chris Dean ▴ 410
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1
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353
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Comment: Comment: Decision of Random Effect and Random Slope in rare cases
3 months ago by Chris Dean ▴ 410
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0
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309
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Comment: Comment: Correcting Farm effects
3 months ago by Chris Dean ▴ 410
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2
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418
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Confusion about "Top Features table" in cellranger web summary output for CITE-Seq libraries
single-cell
updated 4 months ago by 82k • written 4 months ago by ▴ 410
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0
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532
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Answer: Answer: Options for assigning cell labels to barcodes from CITE-seq experiment
6 months ago by Chris Dean ▴ 410
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0
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532
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Comment: Comment: Options for assigning cell labels to barcodes from CITE-seq experiment
6 months ago by Chris Dean ▴ 410
2
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3
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532
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Options for assigning cell labels to barcodes from CITE-seq experiment
single-cell
6 months ago by Chris Dean ▴ 410
0
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0
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987
views
Comment: Comment: Phyloseq sample data error: non-zero dimensions?
6 months ago by Chris Dean ▴ 410
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1
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987
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Comment: Comment: Phyloseq sample data error: non-zero dimensions?
6 months ago by Chris Dean ▴ 410
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0
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626
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Comment: Comment: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
6 months ago by Chris Dean ▴ 410
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1
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626
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Answer: Answer: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
7 months ago by Chris Dean ▴ 410
6
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1
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6.0k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by Chris Dean ▴ 410
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1
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515
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Comment: Comment: Adjusting covariate in regression model
8 months ago by Chris Dean ▴ 410
0
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0
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493
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Comment: Comment: Assigning cell types to cells based on expression of cell surface markers
10 months ago by Chris Dean ▴ 410
1
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2
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493
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Assigning cell types to cells based on expression of cell surface markers
tapestri single-cell
10 months ago by Chris Dean ▴ 410
1
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0
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934
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Comment: Comment: phyloseq error
13 months ago by Chris Dean ▴ 410
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0
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790
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Comment: Comment: Database for taxonomic assignment of shotgun sequencing reads data
17 months ago by Chris Dean ▴ 410
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0
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771
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Comment: Comment: Need help in using dada2
19 months ago by Chris Dean ▴ 410
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0
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509
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Comment: Comment: Identification of conserved and varaible regions on 16s rRNA sequences
23 months ago by Chris Dean ▴ 410
2
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1
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1.4k
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Comment: Comment: losing large amount of reads when using Qiime2 vsearch joinpairs command
2.0 years ago by Chris Dean ▴ 410
1
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1
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974
views
Comment: Comment: Load cvs files into R to make manhattan plots using ggplot
2.2 years ago by Chris Dean ▴ 410
1
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2
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1.1k
views
Comment: Comment: What should I choose for a bachelor's and master's degree
2.2 years ago by Chris Dean ▴ 410
0
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1
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1.1k
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Comment: Comment: Bioinformatics Scientist
2.2 years ago by Chris Dean ▴ 410
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0
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847
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Comment: Comment: Coping with duplicated sequences in shotgun analysis
2.2 years ago by Chris Dean ▴ 410
1
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0
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818
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Comment: Comment: Name for bulk-metagenomic studies?
2.2 years ago by Chris Dean ▴ 410
2
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1
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734
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Choosing the number of components in a DMM model
Microbiome Clustering Statistics
updated 2.3 years ago by 27k • written 2.3 years ago by ▴ 410
0
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1
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1.1k
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Comment: Comment: Trimmomatic parameters
2.4 years ago by Chris Dean ▴ 410
0
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0
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756
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Comment: Comment: How to calculate similarity of two bacterial compositions?
2.4 years ago by Chris Dean ▴ 410
0
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1
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756
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Comment: Comment: How to calculate similarity of two bacterial compositions?
2.4 years ago by Chris Dean ▴ 410
0
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0
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894
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Comment: Comment: rarefaction curve
2.4 years ago by Chris Dean ▴ 410
0
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1
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803
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Comment: Comment: ordination analysis
2.4 years ago by Chris Dean ▴ 410
0
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1
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803
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Answer: Answer: ordination analysis
2.4 years ago by Chris Dean ▴ 410
2
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1
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2.0k
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Answer: Answer: extremely low classified reads from sequencing gut microbiome data, applying rea
2.5 years ago by Chris Dean ▴ 410
0
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0
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960
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Comment: Comment: bowtie2 and then HISAT2? What does it mean in Data processing details on a paper
2.6 years ago by Chris Dean ▴ 410
0
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1
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2.5k
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Comment: Comment: Recommended mapper
2.6 years ago by Chris Dean ▴ 410
1
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1
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2.5k
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Answer: Answer: Recommended mapper
2.6 years ago by Chris Dean ▴ 410
0
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0
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1.4k
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Answer: Answer: help with time series analysis
2.6 years ago by Chris Dean ▴ 410
0
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2
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1.5k
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Comment: Comment: Subset a Vcf
2.6 years ago by Chris Dean ▴ 410
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1
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1.1k
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Answer: Answer: Memory and time Estimates for 100x genome alignments
2.6 years ago by Chris Dean ▴ 410
1
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1
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1.3k
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Answer: Answer: Type of analyses Which can be performed on Whole Genome Data
2.6 years ago by Chris Dean ▴ 410
64 results • Page 1 of 2
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