Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
4
replies
636
views
how to find genes that are significantly expressed in brain cortex samples
rna-seq
gene-expression
updated 4 weeks ago by
ATpoint
82k • written 4 weeks ago by
rheab1230
▴ 140
0
votes
1
reply
636
views
Comment:
Comment: how to find genes that are significantly expressed in brain cortex samples
4 weeks ago by
rheab1230
▴ 140
0
votes
0
replies
196
views
beta coefficient improves after doing mediation analysis
coefficient
mediation
beta
regression
8 weeks ago by
rheab1230
▴ 140
0
votes
0
replies
545
views
Comment:
Comment: Manhattan plot for TWAS results
11 weeks ago by
rheab1230
▴ 140
5
votes
4
replies
545
views
Manhattan plot for TWAS results
TWAS
GWAS
manhattan-plot
11 weeks ago by
rheab1230
▴ 140
0
votes
1
reply
316
views
Comment:
Comment: How to show that correlation from one method is more significant than other meth
3 months ago by
rheab1230
▴ 140
0
votes
3
replies
316
views
How to show that correlation from one method is more significant than other method?
p-value
model-performance
significance
correlation
updated 3 months ago by
Shred
★ 1.4k • written 3 months ago by
rheab1230
▴ 140
0
votes
1
reply
738
views
Comment:
Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
6 months ago by
rheab1230
▴ 140
0
votes
1
reply
738
views
Comment:
Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
6 months ago by
rheab1230
▴ 140
1
vote
5
replies
738
views
how to convert beta effect size of SNP to a statistical value to be compared across tissues
beta-effect
statistics
SNP
multi-variate
updated 6 months ago by
LChart
3.9k • written 6 months ago by
rheab1230
▴ 140
0
votes
2
replies
531
views
how to evaluate SNPs that are regulating same gene expression across multiple tissues
snp
GTEx
updated 8 months ago by
LChart
3.9k • written 8 months ago by
rheab1230
▴ 140
0
votes
4
replies
1.2k
views
error while installing peertools
peertools
updated 9 months ago by
Mensur Dlakic
★ 27k • written 2.5 years ago by
rheab1230
▴ 140
0
votes
0
replies
359
views
snps being shared by gene in different tissues
mechanism
shared
colocalization
snp
tissues
10 months ago by
rheab1230
▴ 140
0
votes
0
replies
284
views
how to calculate predicted expression using weights from model file
predicted-expression
R
predixcan
updated 10 months ago by
Ram
44k • written 10 months ago by
rheab1230
▴ 140
0
votes
0
replies
460
views
How to testing of cv.glmnet model on the entire dataset rather than just training
cross-validation
testing
glmnet
model
updated 11 months ago by
Ram
44k • written 11 months ago by
rheab1230
▴ 140
0
votes
1
reply
874
views
Comment:
Comment: rank SNPs after elastic net modeling
11 months ago by
rheab1230
▴ 140
0
votes
1
reply
874
views
Comment:
Comment: rank SNPs after elastic net modeling
11 months ago by
rheab1230
▴ 140
1
vote
5
replies
874
views
rank SNPs after elastic net modeling
SNPs
R
elastic-net
modeling
updated 11 months ago by
Shred
★ 1.4k • written 11 months ago by
rheab1230
▴ 140
0
votes
0
replies
368
views
how to plot heatmap in r for all the gene across tissues to see distribution of snps
snp
R
heatmap
updated 11 months ago by
Ram
44k • written 11 months ago by
rheab1230
▴ 140
0
votes
0
replies
1.1k
views
Comment:
Comment: calculate p value and associated z score for snp-gene pair
11 months ago by
rheab1230
▴ 140
0
votes
1
reply
1.1k
views
Comment:
Comment: calculate p value and associated z score for snp-gene pair
11 months ago by
rheab1230
▴ 140
0
votes
1
reply
1.1k
views
Comment:
Comment: calculate p value and associated z score for snp-gene pair
11 months ago by
rheab1230
▴ 140
4
votes
6
replies
1.1k
views
calculate p value and associated z score for snp-gene pair
snp
association
gene
pvalue
11 months ago by
rheab1230
▴ 140
0
votes
0
replies
547
views
Comment:
Comment: how to look for interactions between different chromosomes
11 months ago by
rheab1230
▴ 140
1
vote
2
replies
547
views
how to look for interactions between different chromosomes
SNP
interactions
Gene
HiC
11 months ago by
rheab1230
▴ 140
0
votes
1
reply
909
views
how to input bedpe file in IGV
IGV
interaction
input
bedpe
updated 12 months ago by
Pierre Lindenbaum
161k • written 12 months ago by
rheab1230
▴ 140
0
votes
1
reply
566
views
how to look at interacting SNP for a gene using Hic contact map
peak
interaction
contact-map
Hi-C
updated 12 months ago by
james.hawley
▴ 40 • written 12 months ago by
rheab1230
▴ 140
0
votes
0
replies
308
views
how to calculate minor allele frequency for each snp across samples
maf
snp
genotype
13 months ago by
rheab1230
▴ 140
0
votes
0
replies
648
views
Comment:
Comment: how to look at interaction between SNP and gene
13 months ago by
rheab1230
▴ 140
0
votes
0
replies
349
views
how to plot distribution of SNPs across a set of genes based on distance between snp and gene
snp
genes
updated 14 months ago by
Ram
44k • written 14 months ago by
rheab1230
▴ 140
0
votes
2
replies
648
views
how to look at interaction between SNP and gene
SNP
Gene
Hi-C
13 months ago by
rheab1230
▴ 140
0
votes
1
reply
507
views
how to import hdf5 Hi-C data into R using HiTC package
hdf5
importC
R
HiTC
updated 14 months ago by
rpolicastro
13k • written 14 months ago by
rheab1230
▴ 140
0
votes
0
replies
316
views
how to get genomic range for hi-c datasets in hdf5 file
R
hi-c
contact-map
genomic-ranges
updated 14 months ago by
Ram
44k • written 14 months ago by
rheab1230
▴ 140
0
votes
0
replies
315
views
how to interpret hi-c heatmap hdf5 file
heatmap
maps
hdf5
hi-c
14 months ago by
rheab1230
▴ 140
0
votes
0
replies
324
views
inquiry related to Hi-C data download
Hi-C
datasets
human
brain-cortex
interaction
matrix
14 months ago by
rheab1230
▴ 140
0
votes
0
replies
903
views
Comment:
Comment: how to create interacting Hi-C peaks
14 months ago by
rheab1230
▴ 140
0
votes
0
replies
903
views
Comment:
Comment: how to create interacting Hi-C peaks
14 months ago by
rheab1230
▴ 140
0
votes
4
replies
903
views
how to create interacting Hi-C peaks
chromatin
interaction
gene
Hi-C
14 months ago by
rheab1230
▴ 140
0
votes
0
replies
440
views
How to find association between a gene-rsid and AD
association
Loci
LD
AD
14 months ago by
rheab1230
▴ 140
0
votes
0
replies
356
views
inquiry related to same SNP for a gene across for two tissues
snp
relation
tissue
genetics
gene
14 months ago by
rheab1230
▴ 140
0
votes
0
replies
329
views
chia-pet tutorial
snp
gene
chia-pet
14 months ago by
rheab1230
▴ 140
0
votes
0
replies
1.5k
views
Comment:
Comment: how to use make.names commnad in r while using rbind function
14 months ago by
rheab1230
▴ 140
3
votes
3
replies
1.5k
views
how to use make.names commnad in r while using rbind function
R
14 months ago by
rheab1230
▴ 140
1
vote
1
reply
484
views
error while submitting a Rscript job through slurm
slurm
R
updated 15 months ago by
Ram
44k • written 15 months ago by
rheab1230
▴ 140
1
vote
0
replies
733
views
Comment:
Comment: installation of bioclite gives an error
15 months ago by
rheab1230
▴ 140
4
votes
2
replies
733
views
installation of bioclite gives an error
R
bioclite
bioconductor
Biocmanager
updated 12 months ago by
Ram
44k • written 15 months ago by
rheab1230
▴ 140
0
votes
0
replies
598
views
Comment:
Comment: difference between chip-seq and association study
15 months ago by
rheab1230
▴ 140
2
votes
2
replies
598
views
difference between chip-seq and association study
association
chip-seq
TWAS
15 months ago by
rheab1230
▴ 140
0
votes
0
replies
390
views
comparison of gene models across tissues
elastinet
TWAS
models
association
16 months ago by
rheab1230
▴ 140
0
votes
1
reply
847
views
Comment:
Comment: gwas summary statistics
16 months ago by
rheab1230
▴ 140
233 results • Page
1 of 5
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6