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comments
0
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0
replies
314
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SeqSQC can be used for sample QC of Whole Genome Sequencing Data
SeqSQC
WGS
12 months ago by
ttom
▴ 220
3
votes
3
replies
1.8k
views
How to choose LiftOver chain file
hg38tohg19
picard
LiftOver
updated 13 months ago by
Giulio Genovese
▴ 560 • written 13 months ago by
ttom
▴ 220
0
votes
1
reply
1.1k
views
Comment:
Comment: bcftoold guess ploidy
14 months ago by
ttom
▴ 220
0
votes
3
replies
1.1k
views
bcftoold guess ploidy
bcftools
guess-ploidy
updated 14 months ago by
bk11
★ 3.0k • written 14 months ago by
ttom
▴ 220
0
votes
1
reply
851
views
Annovar Error
annovar
16 months ago by
ttom
▴ 220
0
votes
1
reply
678
views
SnpEff output VCF in `.gz` format
snpeff
updated 16 months ago by
Pierre Lindenbaum
164k • written 16 months ago by
ttom
▴ 220
0
votes
1
reply
879
views
Comment:
Comment: Snpeff run with downloaded genome database
16 months ago by
ttom
▴ 220
1
vote
2
replies
879
views
Snpeff run with downloaded genome database
snpeff
updated 16 months ago by
estpallag
▴ 10 • written 16 months ago by
ttom
▴ 220
1
vote
0
replies
1.1k
views
Comment:
Comment: GATK CombineGVCFs with genotypes './.'
2.3 years ago by
ttom
▴ 220
1
vote
4
replies
1.1k
views
GATK CombineGVCFs with genotypes './.'
GATK
CombineGVCFs
2.3 years ago by
ttom
▴ 220
0
votes
1
reply
1.1k
views
Comment:
Comment: GATK CombineGVCFs with genotypes './.'
2.3 years ago by
ttom
▴ 220
0
votes
0
replies
1.7k
views
Comment:
Comment: How to subset a GVCF using GATK SelectVariants
2.3 years ago by
ttom
▴ 220
1
vote
3
replies
1.7k
views
How to subset a GVCF using GATK SelectVariants
GATK
SelectVariants
2.3 years ago by
ttom
▴ 220
1
vote
0
replies
8.2k
views
Answer:
A: GATK-Depth of Coverage - Issue with per gene coverage
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
ttom
▴ 220
0
votes
1
reply
15k
views
Comment:
C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 5.1 years ago by
Ram
44k • written 11.1 years ago by
ttom
▴ 220
0
votes
1
reply
15k
views
Comment:
C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 5.1 years ago by
Ram
44k • written 11.1 years ago by
ttom
▴ 220
1
vote
1
reply
15k
views
Comment:
C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 5.1 years ago by
Ram
44k • written 11.1 years ago by
ttom
▴ 220
0
votes
0
replies
2.5k
views
Comment:
C: Capture Output files using glob
6.3 years ago by
ttom
▴ 220
0
votes
1
reply
2.5k
views
Comment:
C: Capture Output files using glob
6.3 years ago by
ttom
▴ 220
3
votes
0
replies
2.2k
views
Answer:
A: Workflow Error - "list indices must be integers, not str"
6.3 years ago by
ttom
▴ 220
3
votes
3
replies
2.2k
views
Workflow Error - "list indices must be integers, not str"
CWL
6.3 years ago by
ttom
▴ 220
0
votes
0
replies
2.2k
views
Comment:
C: Workflow Error - "list indices must be integers, not str"
6.3 years ago by
ttom
▴ 220
0
votes
0
replies
5.0k
views
Comment:
C: CWL passing secondary files in a workflow
6.4 years ago by
ttom
▴ 220
0
votes
1
reply
5.0k
views
Comment:
C: CWL passing secondary files in a workflow
6.4 years ago by
ttom
▴ 220
1
vote
0
replies
2.6k
views
Comment:
C: Input type array and Output type file, possible in CWL ?
6.4 years ago by
ttom
▴ 220
3
votes
2
replies
2.6k
views
Input type array and Output type file, possible in CWL ?
CWL
6.4 years ago by
ttom
▴ 220
0
votes
1
reply
5.0k
views
Comment:
C: CWL passing secondary files in a workflow
6.4 years ago by
ttom
▴ 220
3
votes
6
replies
5.0k
views
CWL passing secondary files in a workflow
CWL
updated 6.4 years ago by
biokcb
▴ 170 • written 6.4 years ago by
ttom
▴ 220
0
votes
1
reply
2.5k
views
Comment:
C: Capture Output files using glob
6.4 years ago by
ttom
▴ 220
0
votes
0
replies
2.3k
views
Comment:
C: String editing for output file name
6.4 years ago by
ttom
▴ 220
6
votes
9
replies
2.3k
views
String editing for output file name
CWL
6.4 years ago by
ttom
▴ 220
1
vote
1
reply
2.3k
views
Answer:
A: String editing for output file name
6.4 years ago by
ttom
▴ 220
0
votes
1
reply
2.5k
views
Comment:
C: Capture Output files using glob
6.4 years ago by
ttom
▴ 220
2
votes
9
replies
2.5k
views
Capture Output files using glob
CWL
updated 6.4 years ago by
biokcb
▴ 170 • written 6.4 years ago by
ttom
▴ 220
0
votes
0
replies
2.5k
views
Comment:
C: Capture Output files using glob
6.4 years ago by
ttom
▴ 220
0
votes
1
reply
2.3k
views
Comment:
C: String editing for output file name
6.4 years ago by
ttom
▴ 220
0
votes
0
replies
2.3k
views
Comment:
C: String editing for output file name
6.4 years ago by
ttom
▴ 220
1
vote
0
replies
1.9k
views
Comment:
C: String concatenation for output
6.4 years ago by
ttom
▴ 220
0
votes
0
replies
1.9k
views
Comment:
C: String concatenation for output
6.4 years ago by
ttom
▴ 220
5
votes
5
replies
1.9k
views
String concatenation for output
CWL
updated 6.4 years ago by
drkennetz
▴ 560 • written 6.4 years ago by
ttom
▴ 220
1
vote
0
replies
3.4k
views
Answer:
A: Escape character usage in YML file - running tool in CWL
6.4 years ago by
ttom
▴ 220
1
vote
1
reply
3.4k
views
Escape character usage in YML file - running tool in CWL
CWL
YML
YAML
6.4 years ago by
ttom
▴ 220
1
vote
2
replies
3.5k
views
Problems connecting to NCBI using NCBI edirect
ncbi
edirect
esearch
6.5 years ago by
ttom
▴ 220
0
votes
1
reply
2.4k
views
cramtools Java NoClassDefFoundError
cram
cramtools
8.4 years ago by
ttom
▴ 220
0
votes
0
replies
2.4k
views
Answer:
A: cramtools Java NoClassDefFoundError
8.4 years ago by
ttom
▴ 220
1
vote
0
replies
1.9k
views
Answer:
A: Mutational Calling with SomaticSeq
8.5 years ago by
ttom
▴ 220
0
votes
0
replies
2.6k
views
Comment:
C: Understanding SomaticSniper output
8.6 years ago by
ttom
▴ 220
0
votes
1
reply
2.6k
views
Understanding SomaticSniper output
somaticsniper
8.6 years ago by
ttom
▴ 220
5
votes
2
replies
5.7k
views
Tool or Script to convert MAF file to VCF ?
MAF
VCF
updated 2.7 years ago by
Ram
44k • written 10.0 years ago by
ttom
▴ 220
0
votes
0
replies
5.7k
views
Comment:
Comment: Tool or Script to convert MAF file to VCF ?
updated 2.7 years ago by
Ram
44k • written 10.0 years ago by
ttom
▴ 220
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