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Comment: Comment: How to get the ratio of allele counts from GATK derived VCF file?
2 days ago by DBScan ▴ 310
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133
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Comment: Comment: DRAGEN gVCF files and joint calling GATK-GenomicsDB
3 days ago by DBScan ▴ 310
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0
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754
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Comment: Comment: Why are the basics so complicated? Basic coverage filtering for VCF files
6 weeks ago by DBScan ▴ 310
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0
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872
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Comment: Comment: t-test in two groups, multiple rows
10 weeks ago by DBScan ▴ 310
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0
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881
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Answer: Answer: gnomAD4.0 Hail Table Downloading
10 weeks ago by DBScan ▴ 310
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0
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454
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Comment: Comment: HLA genotyping of whole genome sequencing data
12 weeks ago by DBScan ▴ 310
3
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1
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1.2k
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Answer: Answer: Nextflow and self-made pipelines opinion
12 weeks ago by DBScan ▴ 310
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0
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396
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Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
12 weeks ago by DBScan ▴ 310
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1
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396
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Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
12 weeks ago by DBScan ▴ 310
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1
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965
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
3 months ago by DBScan ▴ 310
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1
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965
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
3 months ago by DBScan ▴ 310
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1
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497
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Answer: Answer: how to extract variants from the vcf.gz files linked below?
3 months ago by DBScan ▴ 310
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1
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280
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Comment: Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
3 months ago by DBScan ▴ 310
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0
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521
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
3 months ago by DBScan ▴ 310
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1
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521
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
3 months ago by DBScan ▴ 310
0
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1
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521
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
3 months ago by DBScan ▴ 310
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0
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746
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Comment: Comment: difference betwween hail and plink
3 months ago by DBScan ▴ 310
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1
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456
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Answer: Answer: What is the best GWAS tool to use for a very large cohort data (UK Biobank data)
3 months ago by DBScan ▴ 310
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0
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644
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Comment: Comment: PCA plot interpretation (single population)
3 months ago by DBScan ▴ 310
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1
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658
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Answer: Answer: fill-from-fasta doesnt fill missing values in REF
4 months ago by DBScan ▴ 310
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0
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538
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Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
4 months ago by DBScan ▴ 310
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1
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594
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Answer: Answer: Suggestions for a simpler solution for collecting snakemake rule output in a tex
4 months ago by DBScan ▴ 310
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0
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765
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Comment: Comment: Problem with DRAGEN RNAseq hashtable directory
4 months ago by DBScan ▴ 310
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2
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765
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Answer: Answer: Problem with DRAGEN RNAseq hashtable directory
4 months ago by DBScan ▴ 310
1
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0
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389
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Answer: Answer: how to merge two files without duplicating same column
4 months ago by DBScan ▴ 310
1
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1
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779
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Comment: Comment: GIAB Benchmarking
4 months ago by DBScan ▴ 310
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1
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674
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Comment: Comment: Calculating number of SNPs in linkage disequilibrium at different thresholds fro
4 months ago by DBScan ▴ 310
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0
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481
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Comment: Comment: GATK version check failed
4 months ago by DBScan ▴ 310
1
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0
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1.0k
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Comment: Comment: Problem in installing 'magick' R package
5 months ago by DBScan ▴ 310
2
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1
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908
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Answer: Answer: Snakemake alignment script
7 months ago by DBScan ▴ 310
0
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0
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649
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Comment: Comment: Saving the output of LD pruning from SNPRelate package as a new GDS file
8 months ago by DBScan ▴ 310
0
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0
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525
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Answer: Answer: VCF QUAL field for multiple samples
8 months ago by DBScan ▴ 310
1
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2
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1.2k
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Comment: Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
9 months ago by DBScan ▴ 310
1
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1
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1.2k
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Comment: Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
9 months ago by DBScan ▴ 310
0
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1
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734
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Answer: Answer: BWA-mem2 vs Bowtie2: no deterministic option
9 months ago by DBScan ▴ 310
3
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1
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1.2k
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Answer: Answer: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
9 months ago by DBScan ▴ 310
0
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0
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785
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Answer: Answer: vcf file
9 months ago by DBScan ▴ 310
0
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0
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1.7k
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Answer: Answer: The result of Illumina/hap.py using the same file.
9 months ago by DBScan ▴ 310
1
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1
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1.4k
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Answer: Answer: How to liftover SNP positions from one genome to another genome?
10 months ago by DBScan ▴ 310
0
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1
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781
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Comment: Comment: bcftools view to failed reader data
10 months ago by DBScan ▴ 310
2
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1
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781
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Answer: Answer: bcftools view to failed reader data
10 months ago by DBScan ▴ 310
1
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1
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3.3k
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Comment: Comment: Conda/Mamba environment activation error
10 months ago by DBScan ▴ 310
2
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1
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3.3k
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Answer: Answer: Conda/Mamba environment activation error
10 months ago by DBScan ▴ 310
0
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0
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1.2k
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Answer: Answer: Rstudio server in Snakemake
10 months ago by DBScan ▴ 310
1
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0
replies
1.2k
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Comment: Comment: Qualimap multi-bamqc input file
10 months ago by DBScan ▴ 310
1
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1
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1.2k
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Comment: Comment: Qualimap multi-bamqc input file
10 months ago by DBScan ▴ 310
0
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1
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716
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Comment: Comment: whole genome sequencing and assembly
10 months ago by DBScan ▴ 310
0
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1
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716
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Comment: Comment: whole genome sequencing and assembly
10 months ago by DBScan ▴ 310
0
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1
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749
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Comment: Comment: Deepvariant and input CRAM files
10 months ago by DBScan ▴ 310
0
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0
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517
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Answer: Answer: BWA MEM -K option
10 months ago by DBScan ▴ 310
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