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Comment: Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
3 days ago by ev97 ▴ 20
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275
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Comment: Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
3 days ago by ev97 ▴ 20
2
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4
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275
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Can 5' and 3' scRNAseq be processed with the same pipeline?
singlecell seurat 10XGenomics scRNAseq
updated 4 days ago by ▴ 90 • written 4 days ago by ▴ 20
2
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2
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291
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Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc trimming adapters cutadapt RNAseq
updated 6 weeks ago by ★ 6.0k • written 6 weeks ago by ▴ 20
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718
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
9 weeks ago by ev97 ▴ 20
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1
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718
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
9 weeks ago by ev97 ▴ 20
0
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1
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718
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
9 weeks ago by ev97 ▴ 20
2
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7
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718
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Does removal of contaminants in RNAseq data have an impact on downstream analyses?
RNA-seq contamination
updated 9 weeks ago by ▴ 410 • written 9 weeks ago by ▴ 20
1
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0
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654
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Comment: Comment: 1 Bioinformatician position in San Sebastian (Spain)
12 weeks ago by ev97 ▴ 20
1
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3
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654
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Job: 1 Bioinformatician position in San Sebastian (Spain)
postdoc phd proteomics scRNAseq transcriptomics
12 weeks ago by ev97 ▴ 20
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0
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449
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
3 months ago by ev97 ▴ 20
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1
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449
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
3 months ago by ev97 ▴ 20
2
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5
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449
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Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
lncRNA PoliA DGE RNAseq DESeq2
updated 3 months ago by 19k • written 3 months ago by ▴ 20
0
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1
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392
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Comment: Comment: What do you usually use for QC using DNBseq?
4 months ago by ev97 ▴ 20
1
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3
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392
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What do you usually use for QC using DNBseq?
DNBseq fastqc qc Illumina RNA-seq
updated 4 months ago by 142k • written 4 months ago by ▴ 20
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475
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Job: PhD position at CiMUS (Santiago de Compostela, Spain)
transcriptomics PhD RNA-seq Single-Cell
updated 5 months ago by 43k • written 5 months ago by ▴ 20
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0
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245
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Having different % aligned reads in RPF and mRNA for TE analysis
RPF Ribo-Seq Translation TE RNA-seq
5 months ago by ev97 ▴ 20
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0
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1.4k
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Comment: Comment: DNBseq vs Illumina
9 months ago by ev97 ▴ 20
6
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5
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1.4k
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DNBseq vs Illumina
DNBseq fastq sequencing Illumina RNA-seq
9 months ago by ev97 ▴ 20
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0
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1.4k
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Comment: Comment: DNBseq vs Illumina
9 months ago by ev97 ▴ 20
2
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2
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582
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Are SAM attributes necessary if I only keep the BAM files using STAR?
BAM SAM RNA-seq STAR
updated 10 months ago by 142k • written 10 months ago by ▴ 20
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1
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546
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Comment: Comment: How to check if the total million of reads that I have are the ones that I bough
10 months ago by ev97 ▴ 20
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3
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546
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How to check if the total million of reads that I have are the ones that I bought?
fastq RNA-seq
updated 10 months ago by 43k • written 10 months ago by ▴ 20
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1
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996
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Comment: Comment: Same GEO Accession, different SRR number, how to download this RNA-seq paired-en
11 months ago by ev97 ▴ 20
2
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3
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996
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Same GEO Accession, different SRR number, how to download this RNA-seq paired-end data?
sra-toolkit fastq RNA-seq SRA
updated 11 months ago by 142k • written 11 months ago by ▴ 20
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0
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2.3k
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Comment: Comment: Negative values after batch correction using removeBatchEffect from Limma
21 months ago by ev97 ▴ 20
0
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0
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366
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Adjustment by several variables, sequential adjustment or combine them in a single one?
rnaseq combat-seq batch removeBatchEffect limma
21 months ago by ev97 ▴ 20
0
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0
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466
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How to choose the biological variables if you want to keep all the biological signal from your data when you have to adjust by batch?
rnaseq combat-seq batch removeBatchEffect limma
21 months ago by ev97 ▴ 20
2
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4
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2.3k
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Negative values after batch correction using removeBatchEffect from Limma
batch limma removeBatchEffect rna-seq batch-effect
updated 4 weeks ago by 43k • written 22 months ago by ▴ 20
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0
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840
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Comment: Comment: What type of normalization does removeBatchEffect function require as the input?
22 months ago by ev97 ▴ 20
1
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2
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840
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What type of normalization does removeBatchEffect function require as the input?
batch limma removeBatchEffect rna-seq batch-effect
updated 4 weeks ago by 43k • written 22 months ago by ▴ 20
7
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4
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1.4k
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Is there any journal article to reference removeBatchEffect function from Limma?
batch removebatcheffect limma rna-seq batch-effect
updated 4 weeks ago by 43k • written 22 months ago by ▴ 20
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0
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1.4k
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Comment: Comment: Is there any journal article to reference removeBatchEffect function from Limma?
22 months ago by ev97 ▴ 20
0
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1
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2.5k
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Comment: Comment: How to adjust by multiple variables using ComBat-Seq?
22 months ago by ev97 ▴ 20
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1
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2.5k
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Comment: Comment: How to adjust by multiple variables using ComBat-Seq?
22 months ago by ev97 ▴ 20
3
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6
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2.5k
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How to adjust by multiple variables using ComBat-Seq?
CombatSeq combat rna-seq sva batch-effect
updated 4 weeks ago by 43k • written 22 months ago by ▴ 20
0
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0
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416
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How Combat-Seq handles the biological covariables?
combat CombatSeq sva rnaseq
2.3 years ago by ev97 ▴ 20
0
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0
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3.5k
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Comment: Comment: Is there a manual to understand STAR output files?
3.0 years ago by ev97 ▴ 20
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0
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3.5k
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Comment: Comment: Is there a manual to understand STAR output files?
3.0 years ago by ev97 ▴ 20
2
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4
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3.5k
views
Is there a manual to understand STAR output files?
STAR RNAseq alignment
3.0 years ago by ev97 ▴ 20
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