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742
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Comment: Comment: How to compare the quality of assemblies
27 days ago by kirillkirilenko ▴ 40
5
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4
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742
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How to compare the quality of assemblies
nextdenovo assembly hifiasm pacbio
27 days ago by kirillkirilenko ▴ 40
0
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1
reply
476
views
Obtain satellite DNA monomer from dot plot
repeats satellites dot-plot
updated 5 months ago by ★ 1.2k • written 5 months ago by ▴ 40
2
votes
1
reply
352
views
Shorten Illumina reads
RepeatExplorer2 Illumina paired-end
updated 6 months ago by 20k • written 6 months ago by ▴ 40
0
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0
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598
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Comment: Comment: Estimate Genome Size
6 months ago by kirillkirilenko ▴ 40
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1
reply
598
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Comment: Comment: Estimate Genome Size
6 months ago by kirillkirilenko ▴ 40
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4
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598
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Estimate Genome Size
jellyfish genome k-mer
6 months ago by kirillkirilenko ▴ 40
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0
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719
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Comment: Comment: Detect STRs in illumina library
7 months ago by kirillkirilenko ▴ 40
1
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4
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719
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Detect STRs in illumina library
repeats annotation STR
7 months ago by kirillkirilenko ▴ 40
0
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0
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719
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Comment: Comment: Detect STRs in illumina library
7 months ago by kirillkirilenko ▴ 40
1
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0
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905
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Comment: Comment: Make a BedGraph file
11 months ago by kirillkirilenko ▴ 40
3
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3
replies
905
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Make a BedGraph file
BedGraph RepeatMasker BED
11 months ago by kirillkirilenko ▴ 40
3
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2
replies
701
views
Choosing right statistical test in genomics
repeats genomics annotation statistics bed
updated 16 months ago by 27k • written 16 months ago by ▴ 40
0
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0
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444
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Metagenome analysis on EPI2ME ONT
metagenomics ONT 16S longreads
16 months ago by kirillkirilenko ▴ 40
0
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0
replies
1.1k
views
Comment: Comment: Show genome coverage in IGV-browser
18 months ago by kirillkirilenko ▴ 40
1
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0
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1.1k
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Comment: Comment: Determine type of mutation
18 months ago by kirillkirilenko ▴ 40
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1
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1.1k
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Comment: Comment: Determine type of mutation
18 months ago by kirillkirilenko ▴ 40
4
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4
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1.1k
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Determine type of mutation
hisat2 alignment annotation
18 months ago by kirillkirilenko ▴ 40
0
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0
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1.1k
views
Comment: Comment: Show genome coverage in IGV-browser
18 months ago by kirillkirilenko ▴ 40
0
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1
reply
1.1k
views
Comment: Comment: Show genome coverage in IGV-browser
18 months ago by kirillkirilenko ▴ 40
0
votes
5
replies
1.1k
views
Show genome coverage in IGV-browser
assembly annotation igv
18 months ago by kirillkirilenko ▴ 40
0
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1
reply
1.2k
views
Comment: Comment: Variant calling lost variant
19 months ago by kirillkirilenko ▴ 40
0
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1
reply
1.2k
views
Comment: Comment: Variant calling lost variant
19 months ago by kirillkirilenko ▴ 40
2
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7
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1.2k
views
Variant calling lost variant
bcftools samtools variant-calling alignment
updated 18 months ago by ★ 1.2k • written 19 months ago by ▴ 40
0
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1
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1.2k
views
Comment: Comment: Variant calling lost variant
19 months ago by kirillkirilenko ▴ 40
0
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1
reply
586
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Find breakpoints using long reads
alignment nanopore samtools
19 months ago by kirillkirilenko ▴ 40
0
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1
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643
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Comment: Comment: Construct a phylogenetic tree of apes
20 months ago by kirillkirilenko ▴ 40
0
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3
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643
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Construct a phylogenetic tree of apes
phylogenetics msa
updated 20 months ago by ★ 1.4k • written 20 months ago by ▴ 40
0
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1
reply
534
views
Create library of TEs de novo
TEs DNA repetitive annotation
updated 21 months ago by 15k • written 21 months ago by ▴ 40
1
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1
reply
478
views
Convert mpileup file into dataframe
variant-calling samtools bcftools
updated 11 months ago by 44k • written 21 months ago by ▴ 40
0
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0
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1.3k
views
Comment: Comment: What are rnd families predicted by RepeatModeler?
21 months ago by kirillkirilenko ▴ 40
0
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0
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426
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Classify unknown TEs produced by RepeatModeler
repeats TE genome
21 months ago by kirillkirilenko ▴ 40
0
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0
replies
1.1k
views
Comment: Comment: Align short sequence against ONT reads
23 months ago by kirillkirilenko ▴ 40
0
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1
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1.1k
views
Comment: Comment: Align short sequence against ONT reads
23 months ago by kirillkirilenko ▴ 40
1
vote
5
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1.1k
views
Align short sequence against ONT reads
long-reads ONT alignment genome
updated 6 weeks ago by 44k • written 23 months ago by ▴ 40
0
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0
replies
1.2k
views
Comment: Comment: Error executing process > consensus_classification in NanoCLUST
23 months ago by kirillkirilenko ▴ 40
0
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0
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1.4k
views
Comment: Comment: Augustus output
2.0 years ago by kirillkirilenko ▴ 40
0
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1
reply
1.4k
views
Comment: Comment: Augustus output
2.0 years ago by kirillkirilenko ▴ 40
3
votes
5
replies
1.4k
views
Augustus output
annotation augustus
updated 2.0 years ago by 8.6k • written 2.0 years ago by ▴ 40
0
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1
reply
473
views
How to examine .hic files from Hi-C analysis?
Hi-C 3D-genome
updated 2.1 years ago by 142k • written 2.1 years ago by ▴ 40
0
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0
replies
1.5k
views
Comment: Comment: How to parse RepeatMasker output
2.1 years ago by kirillkirilenko ▴ 40
1
vote
3
replies
1.5k
views
How to parse RepeatMasker output
bash python RepeatMasker
updated 2.1 years ago by 54k • written 2.1 years ago by ▴ 40
3
votes
3
replies
2.1k
views
Perl modules for RepeatModeler
RepeatModeler Perl
updated 2.2 years ago by 54k • written 2.2 years ago by ▴ 40
2
votes
5
replies
3.6k
views
Demultiplexing nanopore reads
demultiplexing ONT barcodes
updated 21 months ago by ★ 2.7k • written 2.5 years ago by ▴ 40
2
votes
3
replies
1.7k
views
Nanopore metagenomics analysis
ONT metagenomics microbiome
updated 2.6 years ago by ▴ 410 • written 2.6 years ago by ▴ 40
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