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Comment: Comment: Extracting mutation status from MAF files - TCGA
14 hours ago by Zhenyu Zhang ★ 1.2k
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212
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Comment: Comment: Obtaining Infinium Methylation450K manifest for hg38
14 hours ago by Zhenyu Zhang ★ 1.2k
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191
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Answer: Answer: Nomalization - TCGA, RNA-seq and Microarray
14 hours ago by Zhenyu Zhang ★ 1.2k
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0
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1.1k
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Comment: Comment: The GDC Legacy Archive is retiring soon.
8 days ago by Zhenyu Zhang ★ 1.2k
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1
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551
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Comment: Comment: How to access TCGA samples that were treated with a specific drug?
8 days ago by Zhenyu Zhang ★ 1.2k
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2
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1.1k
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News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
8 days ago by Zhenyu Zhang ★ 1.2k
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1
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985
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Comment: Comment: Method to detect genome doubling
25 days ago by Zhenyu Zhang ★ 1.2k
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311
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Comment: Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
4 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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201
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Answer: Answer: Human Methylation Infinum Bead - probe to gene mapping
4 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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562
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Answer: Answer: Artificial deletion in bam
5 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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378
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Answer: Answer: Help with finding Genomic coordinates and exon they belong to
5 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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255
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Answer: Answer: Quantify the junction abundance?
5 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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405
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Answer: Answer: lncRNA from TCGA
5 weeks ago by Zhenyu Zhang ★ 1.2k
2
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0
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337
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Answer: Answer: Can I have multiple active GDC download tokens?
6 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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287
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Answer: Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
7 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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308
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Answer: Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
8 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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187
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Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 9 weeks ago by 43k • written 10 weeks ago by ★ 1.2k
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2
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1.5k
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Answer: Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
10 weeks ago by Zhenyu Zhang ★ 1.2k
1
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1
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325
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Answer: Answer: TCGA metadata intersection
10 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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237
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Comment: Comment: How to map CPTAC digital pathology slides to sample ID and metadata
11 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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323
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Answer: Answer: How to find clinical data for TARGET AML
11 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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499
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Comment: Comment: How to identify biallelic mutations called using WES data?
11 weeks ago by Zhenyu Zhang ★ 1.2k
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719
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Comment: Comment: TCGA Biospecimens Slides Extraction
11 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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719
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Comment: Comment: TCGA Biospecimens Slides Extraction
11 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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719
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Comment: Comment: TCGA Biospecimens Slides Extraction
12 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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404
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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553
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Answer: Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
3 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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498
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Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
3 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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939
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Comment: Comment: Is it possible to access the code of a bioinformatics article?
3 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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939
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Answer: Answer: Is it possible to access the code of a bioinformatics article?
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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729
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Comment: Comment: Manhattan Plot
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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473
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Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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788
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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788
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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723
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Comment: Comment: Understanding gene level copy number data from TCGAbiolinks
5 months ago by Zhenyu Zhang ★ 1.2k
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1
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499
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Answer: Answer: Help doing differential expression analysis -experimental design and gProfiler T
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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448
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Answer: Answer: Diferences between TCGAbiolinks and cBioportal
5 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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565
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
5 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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487
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
5 months ago by Zhenyu Zhang ★ 1.2k
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1
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487
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
5 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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650
views
Comment: Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by Zhenyu Zhang ★ 1.2k
0
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1
reply
565
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
6 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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925
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Comment: Comment: Help locating TCGA data from cbioportal
6 months ago by Zhenyu Zhang ★ 1.2k
2
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1
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650
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Answer: Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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881
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Comment: Comment: different sample size between TCGA portal and TCGAbiolinks package
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.1k
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Comment: Comment: CPTAC data download, transcriptomics
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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628
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Answer: Answer: cptac data download
6 months ago by Zhenyu Zhang ★ 1.2k
2
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0
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1.6k
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Comment: Comment: Can BWA (mem) detect longer deletions?
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.1k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
6 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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1.1k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
7 months ago by Zhenyu Zhang ★ 1.2k
249 results • Page 1 of 5
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