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News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
10 weeks ago by sina.majidian ▴ 20
1
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183
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News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
10 weeks ago by David Langenberger 11k
1
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1
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233
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News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 10 weeks ago by 43k • written 10 weeks ago by • 0
0
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0
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216
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
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249
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News: The 2024 Canadian Bioinformatics Workshops are here!
CBW workshop training
11 weeks ago by bioinformatics.ca • 0
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197
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News: Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R manipulation tidyverse data
11 weeks ago by Sole • 0
0
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0
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217
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News: Online course: Reproducibility in Bioinformatics
Docker Singularity WorkflowManagementSystems Reproducibility
11 weeks ago by carlopecoraro2 ★ 2.5k
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282
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News: Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly Nanopore longreads
12 weeks ago by carlopecoraro2 ★ 2.5k
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258
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News: Webinar about scRNA-seq cell type prediction
scRNAseq
updated 12 weeks ago by 142k • written 12 weeks ago by • 0
0
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0
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281
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News: Online course: Spatial Omics in R/Bioconductor
R Spatial-Omics Bioconductor tidyverse transcriptomics
updated 12 weeks ago by 43k • written 12 weeks ago by ★ 2.5k
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0
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232
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News: Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference Population-Genomics Demographic-Models
updated 12 weeks ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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210
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News: Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R Proteomics Bioconductor Mass-Spectrometry
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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214
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News: Virtual Workshops with the UConn Computational Biology Core
Workshop genomics
updated 3 months ago by 142k • written 3 months ago by ▴ 10
0
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0
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199
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News: NGS Data Analysis Courses for Absolute Beginners
NGS DNAseq RNAseq singlecellsequencing DataAnalysis
3 months ago by David Langenberger 11k
0
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215
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News: Online course: Genome Assembly and Annotation
Annotation Genome-Assembly Nanopore Pacbio
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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197
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News: Online course: Computation Tumor Evolution
R Cancer-Genomics Tumor-Evolution Genomics
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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194
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News: Course live online Intro Bayesian Analyses, March 4-8, 2024
R python bayesian
3 months ago by Sole • 0
0
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1
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996
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News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
3 months ago by David Langenberger 11k
0
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244
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News: Online course : Meta-Analysis in R
R Meta-Analysis Statistics
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
1
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0
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209
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News: Cellosaurus release 48 is available
cell-line biocuration cellosaurus knowledgebase
3 months ago by Amos Bairoch ▴ 120
0
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0
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244
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News: Online course: Genome Assembly Using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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267
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News: BLAST FASTA Files Will No Longer Be Available on the FTP Site Effective April 2024
NCBI BLAST
3 months ago by PeterC_NCBI ▴ 410
0
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252
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News: EMBL-EBI Training | Systems biology: from large datasets to biological insight
systems
3 months ago by EMBL Events ▴ 10
0
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0
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218
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News: Online course - Sex Chromosome Evolution
Evolution Genomics Sex-Chromosome
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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1
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838
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News: LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS Online-Workshop
updated 4 months ago by 43k • written 4 months ago by 11k
7
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2
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1.2k
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News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
4 months ago by David Langenberger 11k
0
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0
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253
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News: Online course: Generalized Additive Models (GAMs) in R
R Statistics Gams
4 months ago by carlopecoraro2 ★ 2.5k
0
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0
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280
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News: Online course - Introduction to Python for biologists
Python Programming NGSData
4 months ago by carlopecoraro2 ★ 2.5k
1
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0
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220
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News: Online course - Introduction to Machine Learning in R for omics data
R Omics MachineLearning StatisticalLearning
4 months ago by carlopecoraro2 ★ 2.5k
0
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0
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208
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News: Online course - Flow cytometry data analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
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1
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346
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News: Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP XML ClinVar NCBI
4 months ago by PeterC_NCBI ▴ 410
4
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0
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225
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News: Transform Your Research with Our NGS Data Analysis Online Course!
DNAseq NGS Biologists OnlineCourse RNAseq
4 months ago by David Langenberger 11k
0
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0
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266
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News: 3rd edition of the Winter School in Bioinformatics - Online February 26 - March 1
genomics reproducibility phylogenomics transcriptomics
4 months ago by carlopecoraro2 ★ 2.5k
0
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0
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588
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News: course - Reproducibility in Bioinformatics
Docker Reproducibility
written 14 months ago by ★ 2.5k
0
votes
1
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399
views
News: Online Course - Genomic Prediction
Genomic-Prediction Selective-Breeding
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
votes
0
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291
views
News: Flow cytometry data analysis with R/Bioconductor course
FlowCytometry R Bioconductor
5 months ago by carlopecoraro2 ★ 2.5k
2
votes
2
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551
views
News: Unix and Shell Scripting for Bioinformatics course
Bash Unix Shell-Scripting
5 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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338
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News: Bayesian Data Analysis in R course
R Bayesian-Statistics
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
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346
views
News: Practical Hands-On Introduction to R course
R Tidyverse Data-Analysis
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
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309
views
News: Landscape Genomics course at the EPFL in Lausanne, Switzerland
genomics Landscape-Genomics
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
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0
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300
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News: New version of ElasticBLAST (1.2.0) available from NCBI
ElasticBLAST NCBI BLAST
5 months ago by PeterC_NCBI ▴ 410
0
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0
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294
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News: Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R Gene-Set-Enrichment-Analysis GSEA Bioconductor
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
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0
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312
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News: University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
expression singlecell rnaseq
5 months ago by mia.nahom ▴ 10
0
votes
0
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288
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News: Online course: Introduction to Python, February 12th-March 11th, 2024
python courses
5 months ago by Sole • 0
0
votes
1
reply
393
views
News: Course: Genome Assembly and Annotation
Biodiversity Genome-Assembly Genome-Annotation Long-reads
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
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360
views
News: GWAS course
R GWAS
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
3
votes
0
replies
312
views
News: NCBI BLAST+ 2.2.15 now available for download
NCBI Taxonomy BLAST
5 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
318
views
News: Course - Introduction to R Shiny
R Data-Visualisation Shiny
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
290
views
News: Online expert taught RNA-Seq workshop
workshop
6 months ago by fturner ▴ 10
0
votes
0
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332
views
News: Course - RNAseq in non-model organisms
Pacbio RNA-seq Nanopore
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
1,000 results • Page 2 of 20
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plotting trees in R: node labels from nexus tree files
Interpreting the Jackstraw plot of Seurat
A: How is the design in DESeq2 work?
Error in CIBERSORTx ($ operator is invalid for atomic vectors)
Answer: RNAseq coverage vs depth for transcript isoform expression?
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
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Comment: HGVS Nomenclature of Multiple Indels found in Cis by LauferVA 4.2k
how has this code progressed? is it publically available? would you want to work together?
Comment: Design for complex RNA-Seq experiment using Deseq2 by Ezequiel • 0
I completely agree with most points. The PCA shows that the biggest driver of difference is the patients themselves, with PRE and POST time…
Comment: Add stats to the plot by marco.barr ▴ 130
Hi, you can add statistical annotations using `ggpubr` function `stat_pvalue_manual `. You need to make sure you calculate the p-values fir…
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from by ATpoint 82k
Use everything before the whitespace in list.txt, for example `A00869:294:HCW57DSXY:2:1101:3929:1000` and not `A00869:294:HCW57DSXY:2:1101:…
Answer: CellRanger output more cells than specified using --force-cells? Why? by scideas ▴ 30
I actually had this same issue with CellRanger v7- turns out that since you have 2 species in your mapping reference, CellRanger is forcing…
Answer: Checking chromosome builds for genotyping data by Muhammad • 0
Assume you have genotype data in Plink format. (G.bed, G.bim, G.fam) Download some reference panel data in Plink format (R.bed, R.bim, R.f…
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors) by nguyenn6 • 0
did you ever figure it out? i'm having the same issue.
Comment: Traveler with Infernal mapping failed by anton.i.petrov • 0
Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
Comment: constructing pangenome through psvcp by analyst ▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform estimation precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
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