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1,000 results • Page
1 of 20
Sort: Rank
Rank
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Votes
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0
votes
1
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14
views
student
epitranscriptomics
updated just now by
ATpoint
82k • written 25 minutes ago by
useriwa
• 0
0
votes
0
replies
16
views
Imputation of missing genotypes
panel
beagle
imputation
36 minutes ago by
analyst
▴ 30
0
votes
0
replies
16
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
44 minutes ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
22
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
updated 41 minutes ago by
Papyrus
★ 2.9k • written 1 hour ago by
Zeng Jingyu
▴ 60
0
votes
0
replies
18
views
Correlation Analysis
statistics
methylation
NGS
expression
1 hour ago by
Researcher
▴ 30
0
votes
0
replies
20
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
1 hour ago by
robert.flynn.21
• 0
0
votes
0
replies
20
views
Gene density plot
density
gene
2 hours ago by
gubrins
▴ 290
0
votes
3
replies
62
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 1 hour ago by
Michael
54k • written 3 hours ago by
qwertyuiop26
• 0
0
votes
0
replies
61
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
15 hours ago by
Scott McKay
▴ 30
0
votes
0
replies
61
views
Cellphonedb results
cpdb
visulization
cellphonedb
15 hours ago by
piotto
▴ 20
0
votes
1
reply
122
views
Applying the metacell2 algorithm using python
single-cell
scanpy
cells
meta
python
updated 15 hours ago by
Wayne
★ 2.0k • written 17 hours ago by
JACKY
▴ 140
0
votes
0
replies
72
views
Cox Model with interaction item interpretation
Cox
20 hours ago by
Bine
▴ 60
0
votes
0
replies
63
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
20 hours ago by
Javier
• 0
0
votes
4
replies
321
views
Question regarding WGCNA
WGCNA
Network-construction
updated 18 hours ago by
andres.firrincieli
3.6k • written 3 days ago by
deepak
• 0
0
votes
0
replies
71
views
vdjtools
vdjtools
21 hours ago by
yueli7
▴ 250
0
votes
1
reply
117
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 30 minutes ago by
andres.firrincieli
3.6k • written 23 hours ago by
Antonio
• 0
0
votes
0
replies
83
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 23 hours ago by
Ram
43k • written 23 hours ago by
sidrah.maryam
▴ 50
0
votes
0
replies
71
views
Normalizing AMR gene count data
abundance
RGI
updated 23 hours ago by
Ram
43k • written 23 hours ago by
arshad1292
▴ 100
0
votes
0
replies
82
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 1 day ago by
Pierre Lindenbaum
161k • written 1 day ago by
sarumonsus
• 0
0
votes
0
replies
90
views
How to implement an IGV to streamlit app?
python
streamlit
igv
1 day ago by
avigail.shnaider
• 0
0
votes
0
replies
105
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
1 day ago by
KHURRAM SHAHZAD
• 0
0
votes
0
replies
102
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
1 day ago by
Christopher
• 0
0
votes
0
replies
109
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
1 day ago by
DGTool
• 0
0
votes
0
replies
118
views
Seurat V5 integration
Seurat
samples
integration
combine
2 days ago by
starswillfade
▴ 10
0
votes
1
reply
170
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
updated 15 hours ago by
bk11
★ 2.4k • written 2 days ago by
Yoosef
▴ 60
0
votes
1
reply
251
views
creating batch colum for batch correction
batch-correction
combat
1 day ago by
Expert
▴ 10
0
votes
1
reply
202
views
Help with DGEList function
DGEList
R
updated 1 day ago by
marco.barr
▴ 90 • written 3 days ago by
Natali
• 0
0
votes
0
replies
145
views
Homer motif analysis
Homer
3 days ago by
daffodil
▴ 10
0
votes
3
replies
249
views
HCL database download
database
HCL
human
5 hours ago by
sooni
▴ 20
0
votes
1
reply
195
views
fastq screen aligner no specified.
BWA
Bowtie2
FastqScreen
updated 3 days ago by
GenoMax
142k • written 3 days ago by
Ximena
• 0
0
votes
1
reply
188
views
filtering before dada2
bbduk
qiime2
dada2
metagenomic
updated 3 days ago by
Ram
43k • written 3 days ago by
Valentina
• 0
0
votes
6
replies
403
views
Differential Expression Analysis using DESeq2 in R
deseq2
R
updated 3 days ago by
swbarnes2
14k • written 3 days ago by
Erina
• 0
1
vote
3
replies
273
views
TaxID mapping file
annotation
blobtools
RNAseq
decontamination
transcriptomes
1 day ago by
Lada
▴ 30
1
vote
0
replies
143
views
.lgen file has 3+ different alleles
PLINK
lgen
ped
updated 1 day ago by
zx8754
11k • written 3 days ago by
Emilie
▴ 10
0
votes
0
replies
136
views
vcf procesing for ML antigen prediction
formats
vcf
fastaq
HLA_imputation
HLA_typing
3 days ago by
Javier
• 0
0
votes
1
reply
229
views
Extracting mutation status from MAF files - TCGA
TCGA
maf
mutation
updated 3 days ago by
Thanujay S
• 0 • written 3 days ago by
yahn
• 0
0
votes
0
replies
129
views
IGV interpretation for ATM gene for chromosome 11 for a deceased partient suspected of having melanoma
genetic
Variant
predisposition
3 days ago by
mikemakaveli1
• 0
2
votes
2
replies
211
views
Raw counts using stringtie
stringtie
RNA-seq
updated 3 days ago by
GenoMax
142k • written 3 days ago by
ahmad.sajad4541
• 0
0
votes
0
replies
129
views
Modify plot R mtDNA indel
plot
mtDNA
R
3 days ago by
marco.barr
▴ 90
0
votes
0
replies
272
views
Re-Import modified clusterProfiler's GSEA result from .csv for graphical output-generation (i.e. cnetplot, heatplot)
enrichplot
graphical_output
GSEA
clusterProfiler
3 days ago by
NorbertK
• 0
0
votes
2
replies
242
views
Downloading older version of a tool
Alignment
tools
3 days ago by
Ruqaiya
• 0
0
votes
0
replies
145
views
Generating illumina interops SAV like plots for multiqc reports on HPC
visualization
illumina
ngs
sequencing
4 days ago by
rustykb
▴ 20
3
votes
5
replies
276
views
Generating mpileup file using samtools
mpileup
samtools
updated 3 days ago by
Joe
21k • written 4 days ago by
Ruqaiya
• 0
2
votes
3
replies
278
views
Help with choosing a model species for Augustus for a de novo assembled genome.
augustus
annotation
assembly
genome
updated 3 days ago by
dthorbur
★ 1.9k • written 4 days ago by
Vijith
▴ 30
0
votes
0
replies
145
views
SIngle cell analysis
Seurat
scRNA-seq
Harmony
DoubletFinder
Merge
4 days ago by
Jeyong
• 0
0
votes
0
replies
132
views
Empty table plot using plotGseaTable()
FGSEA
3 days ago by
Chris
▴ 260
3
votes
8
replies
6.6k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk
genomicsdbimport
updated 4 days ago by
Sd
• 0 • written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
195
views
Base Quality Score Recalibration with different reference genome
SNPs
GATK
BQSR
RNA-seq
4 days ago by
dtnondorf
• 0
0
votes
5
replies
381
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 15 hours ago by
Chris Dean
▴ 390 • written 4 days ago by
sovrappensiero
▴ 90
2
votes
8
replies
484
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
16 hours ago by
Qroid
▴ 40
1,000 results • Page
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Answer: plotting PCA PLINK eigenvec output in R
A: PCA in a RNA seq analysis
A: PCA in a RNA seq analysis
Answer: Figures are disappeared from html report of SnpEff
Answer: Figures are disappeared from html report of SnpEff
Comment: removeBatchEffect explained using base R linear models
removeBatchEffect explained using base R linear models
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Recent Replies
Comment: student
by
ATpoint
82k
Please --- https://www.biostars.org/p/357878/ https://www.biostars.org/p/75548/ [Ten Simple Rules for Getting Help from Online Scientifi…
Comment: High Malat-1 expression in single cell data
by
carolofharvest
▴ 30
If rRNA genes have been mistakenly assigned to these genes, could it be expected that the percentage of ribosomal genes(rpl,rps) would be …
Comment: removeBatchEffect explained using base R linear models
by
dariober
14k
(+1) *"implementing" the method just using base R linear models.*: I find implementing from basic starting point to be one of the best, if …
Comment: Is therer any suggestions on mapping rate of WGBS data?
by
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★ 2.9k
Mapping rate for bisulfite data is typically worse because of reduced complexity of the sequences. The efficiency will depend on your read …
Comment: High Malat-1 expression in single cell data
by
carolofharvest
▴ 30
In your paper, you mentioned that a normalization value of 0 for Malat1 is also indicative of a low-quality cell. But what if the dropout e…
Comment: Highest variable features in single cell data
by
carolofharvest
▴ 30
Thank you. But can we say that this is biologically informative ? If this gene had been detected in excess specifically within a single c…
Answer: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
by
Weiwen
• 0
$20,000 for the first Prize?XD
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
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54k
Why does your question sound like an assignment (if it's not, reformulate it, note you are in no position to give the volunteers here assig…
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Michael
54k
Hi, Thank you for your contribution, here is your *free* code review: - This scenario is sort of ideal for a snakemake workflow and I th…
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Hi Daria, I have downloaded pling and the other dependencies as recommended on your github page. I have tried to run the tool a few times …
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19k
The insert size is measured from outermost edge of this read, to the outer most edge of its mate. Like, literally, start_second - start_fir…
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So this is your exam question or assignment? Please understand that posting this here is not doing anyone any good. You are supposed to lea…
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When everything is the same size, correcting for size is pointless. It doesn't change the numbers much at all.
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