KEGG Pathways

Question

[Sudip]

I am trying to extract all the genes that are present in a particular GO term in Arabidopsis. I was able to do so with this code,

go.trial <- getBM(attributes = c("ensembl_gene_id", "external_gene_name"),
      filters = "go", values = "GO:0006779", mart = ensembl)

But now I want to do this for the KEGG pathways, Is the below code correct?

go.trial <- getBM(attributes = c("ensembl_gene_id", "external_gene_name"),
      filters = "kegg", values = "ath03010", mart = ensembl)

[Ram]

is the below code correct

Does it give you what you need?

[Sudip]

No it does not. Do you know of a way that can help me achieve what I want?

[Ram]

Give us as much detail as you can. What error does it give you?