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116,778 results • Page 1 of 2336
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0
votes
2
replies
189
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Quetion regarding WGCNA
WGCNA Network-construction
14 minutes ago by deepak180001 • 0
0
votes
0
replies
16
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vdjtools
vdjtools
43 minutes ago by yueli7 ▴ 250
0
votes
0
replies
16
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Herald: The Biostar Herald for Monday, May 06, 2024
herald
50 minutes ago by Biostar 2.7k
0
votes
0
replies
24
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16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome 16S DESeq2
2 hours ago by Antonio • 0
0
votes
0
replies
28
views
Error while loading model of Spatial data deconvolution using cell2location
Python cell2location
updated 2 hours ago by 43k • written 2 hours ago by ▴ 50
795
votes
167
replies
142k
views
109 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.7k • written 7.4 years ago by 100k
0
votes
0
replies
26
views
Normalizing AMR gene count data
abundance RGI
updated 2 hours ago by 43k • written 2 hours ago by ▴ 100
1
vote
1
reply
65
views
error in R code
R
updated 2 hours ago by 43k • written 3 hours ago by • 0
0
votes
0
replies
41
views
News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering Spatial-transcriptomics
updated 2 hours ago by 43k • written 4 hours ago by • 0
0
votes
0
replies
39
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 5 hours ago by 161k • written 5 hours ago by • 0
0
votes
2
replies
192
views
Tissue-specific DEG analysis with DEseq2
DEseq2 RNA-seq DEG R
1 hour ago by M. ▴ 30
0
votes
0
replies
59
views
How to implement an IGV to streamlit app?
python streamlit igv
6 hours ago by avigail.shnaider • 0
1
vote
5
replies
184
views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated 2 hours ago by 43k • written 8 hours ago by • 0
0
votes
2
replies
150
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
updated 2 hours ago by 142k • written 19 hours ago by ▴ 150
0
votes
1
reply
254
views
DMRcate ranges liftover hg19 to hg38
DMRcate Liftover DMR Methylation annotation
updated 14 hours ago by • 0 • written 12 weeks ago by ▴ 20
2
votes
2
replies
175
views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
STRING-DB protein STRING-DB-API
16 hours ago by brandon • 0
0
votes
0
replies
83
views
Gene ontology and homologs
gene-ontology
updated 2 hours ago by 43k • written 20 hours ago by • 0
0
votes
0
replies
74
views
Mitogenomes gap closure and making circular genome
gapclosure Mitogenomes validation circulargenome
21 hours ago by KHURRAM SHAHZAD • 0
1
vote
5
replies
271
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 1 hour ago by 43k • written 1 day ago by • 0
0
votes
0
replies
77
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria Metagenomics Database
22 hours ago by Christopher • 0
4
votes
1
reply
183
views
LD-prune variants while maintaining a list of SNPs
snp vcf plink filtering independent
updated 6 hours ago by 11k • written 1 day ago by ▴ 560
2
votes
2
replies
266
views
Association study using SNP data
Association Allele Parentage SNP
1 day ago by drajangirija • 0
0
votes
0
replies
71
views
News: Online course: Bioinformatic analysis of transposable elements
GenomeAssembly Transcriptomics TransposableElements ManualCuration
1 day ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
84
views
Clarification on StringTie's `--merge` parameters
stringtie stringtie-merge
1 day ago by DGTool • 0
0
votes
0
replies
84
views
Seurat V5 integration
Seurat samples integration combine
1 day ago by starswillfade ▴ 10
0
votes
0
replies
95
views
Problem with Seurat package in PercentageFeatureSet function
cell single
1 day ago by Yoosef ▴ 60
0
votes
1
reply
316
views
Job: Seeking Bioinformatics/Drug Design Opportunities - PhD in Pharmacology with Experience in RNA-seq, CADD & Deep Learning Molecular Generation
search job
updated 1 day ago by 142k • written 1 day ago by • 0
3
votes
4
replies
337
views
Design matrix Differential expression analysis
RNA-seq Differential-expression
1 hour ago by SHN ▴ 40
4
votes
2
replies
211
views
GRCh38.gmap file
gnomix gmap
1 day ago by lorena9132 ▴ 10
2
votes
3
replies
781
views
Issues with Mixture file when using CIBERSORTx
Deconvolution CIBERSORTx
updated 1 day ago by • 0 • written 7 months ago by • 0
0
votes
1
reply
221
views
creating batch colum for batch correction
batch-correction combat
4 hours ago by Expert ▴ 10
1
vote
4
replies
305
views
Segmentation error while using a tool
smalt
updated 2 days ago by ★ 27k • written 2 days ago by • 0
0
votes
1
reply
171
views
Help with DGEList function
DGEList R
updated 17 hours ago by ▴ 90 • written 2 days ago by • 0
0
votes
0
replies
115
views
Homer motif analysis
Homer
2 days ago by daffodil ▴ 10
0
votes
1
reply
156
views
HCL database download
database HCL human
updated 2 days ago by 142k • written 2 days ago by ▴ 20
1
vote
2
replies
1.1k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
1 day ago by Zhenyu Zhang ★ 1.2k
2
votes
1
reply
266
views
Force PLINK2 to neglect chrX as the sex chromosome
PLINK2
updated 2 days ago by 10k • written 6 days ago by ▴ 10
0
votes
5
replies
315
views
Easy way to find out which allele is minor allele from bed file?
plink
updated 2 days ago by 10k • written 2 days ago by ▴ 750
0
votes
1
reply
188
views
visualize GSEA
barplot RNA-seq GSEA enrichment
updated 1 day ago by 43k • written 2 days ago by ▴ 170
0
votes
1
reply
183
views
fastq screen aligner no specified.
BWA Bowtie2 FastqScreen
updated 2 days ago by 142k • written 2 days ago by • 0
0
votes
1
reply
177
views
filtering before dada2
bbduk qiime2 dada2 metagenomic
updated 2 days ago by 43k • written 2 days ago by • 0
0
votes
6
replies
385
views
Differential Expression Analysis using DESeq2 in R
deseq2 R
updated 2 days ago by 14k • written 3 days ago by • 0
0
votes
1
reply
173
views
Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read reverse strand" (flag 32/0x20)
PE BAM SAM flag paired-end
updated 2 days ago by 14k • written 2 days ago by ▴ 190
1
vote
3
replies
259
views
TaxID mapping file
annotation blobtools RNAseq decontamination transcriptomes
21 hours ago by Lada ▴ 30
1
vote
0
replies
136
views
.lgen file has 3+ different alleles
PLINK lgen ped
updated 6 hours ago by 11k • written 2 days ago by ▴ 10
0
votes
0
replies
132
views
vcf procesing for ML antigen prediction
formats vcf fastaq HLA_imputation HLA_typing
2 days ago by Javier • 0
0
votes
1
reply
223
views
Extracting mutation status from MAF files - TCGA
TCGA maf mutation
updated 2 days ago by • 0 • written 2 days ago by • 0
0
votes
0
replies
128
views
IGV interpretation for ATM gene for chromosome 11 for a deceased partient suspected of having melanoma
genetic Variant predisposition
2 days ago by mikemakaveli1 • 0
2
votes
2
replies
208
views
Raw counts using stringtie
stringtie RNA-seq
updated 2 days ago by 142k • written 3 days ago by • 0
0
votes
0
replies
127
views
Modify plot R mtDNA indel
plot mtDNA R
3 days ago by marco.barr ▴ 90
116,778 results • Page 1 of 2336
Recent Votes
A: Meme-Tools: Bit score
Meme-Tools: Bit score
Meme-Tools: Bit score
Comment: error in R code
DEXSeq multiple time points
How to find the most frequent alternative-splicing event from DEXSEQ data?
Comment: Design matrix Differential expression analysis
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Recent Replies
Comment: Quetion regarding WGCNA by deepak180001 • 0
Thank you for your reply andres.firrincieli. I have attached the PCA plot of the expression data used in the WGCNA. ![enter imag…
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Got it, thank you for your response. SN
Comment: How to interpret DEXseq results in therms of significance by Sara ▴ 30
Hi, I used write.table(as.data.frame(DEXSeqResults(MyObj)), "Results.tsv", quote=FALSE, sep="\t", dec=".") to save the result but I recei…
Comment: Tissue-specific DEG analysis with DEseq2 by M. ▴ 30
Can I ask what do you exactly mean by same experiment? If you are talking about the same donor and the same procedure, unfortunately, not a…
Comment: install package: package ‘gmwm’ is not available for this version of R by Ram 43k
Find someone with computer skills near you and consult them. From your posts on the forum, it's clear that you need help at a level that we…
Comment: Gene Specific coverage from WGS data by GenoMax 142k
This is not going to work no matter what program you use since the chromosome identifiers in your GTF (`MN908947.3 `) do not match your BA…
Comment: install.packages("imudata") - package ‘imudata’ is not available for this versio by Ram 43k
Read the answers in the post, understand them and try to implement them.
Comment: High Malat-1 expression in single cell data by t.montserrat.ayuso ▴ 10
Just using the normalized expression of Malat1 works.
Comment: Can I merge Hi-C fastq files from different lanes? by Winter • 0
Awesome, thank you for the concise and straight-forward answer!
Comment: error in R code by ATpoint 82k
Look, before you keep posting these sorts of questions and might gross of users, please read and follow https://www.biostars.org/p/357878/ …
Comment: Gene Specific coverage from WGS data by 1769mkc ★ 1.2k
"Also if is there any other quick way to find gene specific coverage" can you give some example so that its bit more clear what do you mean…
Answer: Tissue-specific DEG analysis with DEseq2 by ATpoint 82k
I assume that all data are from the same experiment, without batch effects and can thus be quantitiatively compared: Many ways to do thi…
Comment: install.packages("imudata") - package ‘imudata’ is not available for this versio by snajafy • 0
I am facing the same problem and I don't know how to solve the problem,....
Comment: install.packages("imudata") by zx8754 11k
[How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning?](https://stackoverflow.com/q/25721884/680068)
Answer: install.packages("imudata") by ATpoint 82k
Welcome to this community. Please learn the most important lesson right away which is reading answers and learning from it. Users gave you …
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