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Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
2 days ago by bioinfo ▴ 150
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230
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Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart RNAseq kallisto
2 days ago by bioinfo ▴ 150
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502
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Comment: Comment: How should I make kallisto indexes?
19 days ago by bioinfo ▴ 150
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5
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502
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How should I make kallisto indexes?
kallisto
updated 19 days ago by ★ 6.0k • written 4 weeks ago by ▴ 150
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321
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
4 weeks ago by bioinfo ▴ 150
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321
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Comment: Comment: How to row normalize a matrixplot?
4 weeks ago by bioinfo ▴ 150
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2
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321
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Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
4 weeks ago by bioinfo ▴ 150
2
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2
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321
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How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
4 weeks ago by bioinfo ▴ 150
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1
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245
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How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 6 weeks ago by 43k • written 6 weeks ago by ▴ 150
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327
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
6 weeks ago by bioinfo ▴ 150
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1
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327
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
6 weeks ago by bioinfo ▴ 150
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5
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327
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How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 6 weeks ago by 43k • written 6 weeks ago by ▴ 150
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1
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547
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Comment: Comment: How does kallisto handle multi mapped reads?
12 weeks ago by bioinfo ▴ 150
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1
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547
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Comment: Comment: How does kallisto handle multi mapped reads?
12 weeks ago by bioinfo ▴ 150
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7
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547
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How does kallisto handle multi mapped reads?
kallisto
updated 12 weeks ago by ★ 6.0k • written 12 weeks ago by ▴ 150
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2
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409
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How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 4 weeks ago by • 0 • written 12 weeks ago by ▴ 150
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0
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295
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How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
5 months ago by bioinfo ▴ 150
4
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2
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648
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Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 6 months ago by 19k • written 6 months ago by ▴ 150
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1
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1.0k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
6 months ago by bioinfo ▴ 150
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1
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1.0k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
6 months ago by bioinfo ▴ 150
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1
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1.0k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
6 months ago by bioinfo ▴ 150
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7
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1.0k
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How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq illumina adapters
updated 6 weeks ago by 43k • written 6 months ago by ▴ 150
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0
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703
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Comment: Comment: Why am I getting different results with kallisto?
6 months ago by bioinfo ▴ 150
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1
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703
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Comment: Comment: Why am I getting different results with kallisto?
6 months ago by bioinfo ▴ 150
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1
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703
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Comment: Comment: Why am I getting different results with kallisto?
6 months ago by bioinfo ▴ 150
3
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4
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703
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Why am I getting different results with kallisto?
kallisto
6 months ago by bioinfo ▴ 150
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1
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504
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Comment: Comment: Are truseq adapter sequences picked up by FASTQC?
6 months ago by bioinfo ▴ 150
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3
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504
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Are truseq adapter sequences picked up by FASTQC?
fastqc truseq
updated 6 months ago by 142k • written 6 months ago by ▴ 150
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0
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350
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How to convert dataframe properly to anndata?
single-cell python anndata
updated 6 weeks ago by 43k • written 6 months ago by ▴ 150
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0
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344
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How to import filtered_tf_bc_matrix and add it to my anndata object?
python anndata atac-seq
updated 6 weeks ago by 43k • written 6 months ago by ▴ 150
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320
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How to subsample ATAC fragment file?
single-cell atac-seq scRNA-seq
updated 6 weeks ago by 43k • written 6 months ago by ▴ 150
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0
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724
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Comment: Comment: How to assign gene names after kallisto when I add GFP?
7 months ago by bioinfo ▴ 150
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1
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724
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Comment: Comment: How to assign gene names after kallisto when I add GFP?
7 months ago by bioinfo ▴ 150
0
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2
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1.5k
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Removing constant/zero columns for PCA?
R pca
updated 7 months ago by ★ 27k • written 7 months ago by ▴ 150
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4
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724
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How to assign gene names after kallisto when I add GFP?
tximport RNA-seq kallisto
7 months ago by bioinfo ▴ 150
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0
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2.0k
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
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0
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2.0k
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
1
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8
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2.0k
views
How to plot proportion of cells in each cluster with scanpy?
scRNA-seq scanpy single-cell
7 months ago by bioinfo ▴ 150
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1
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2.0k
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
0
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1
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2.0k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
0
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0
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679
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Comment: Comment: How to calculate GC content of reads that mapped to a specific gene?
8 months ago by bioinfo ▴ 150
5
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2
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679
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How to calculate GC content of reads that mapped to a specific gene?
STAR RNA-seq
8 months ago by bioinfo ▴ 150
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0
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937
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
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1
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937
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
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0
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937
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
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1
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937
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
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8
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937
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Can the DESeq2 object for paired data be set with design= ~ batch + condition?
rna-seq deseq2
8 months ago by bioinfo ▴ 150
1
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1
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600
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Do I need to perform basic filtering before using scrublet?
scanpy scrublet
updated 8 months ago by 142k • written 8 months ago by ▴ 150
0
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0
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990
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Comment: Comment: Questions about per base sequence quality and GC content.
9 months ago by bioinfo ▴ 150
0
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1
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990
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Comment: Comment: Questions about per base sequence quality and GC content.
9 months ago by bioinfo ▴ 150
139 results • Page 1 of 3
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