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988
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Comment: Comment: Create a new bed file with all pairwise combinations between two other bed files
12 days ago by Alex Reynolds 35k
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0
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539
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Comment: Comment: Overlapping Ranges within Granges object
15 days ago by Alex Reynolds 35k
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1
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539
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Answer: Answer: Overlapping Ranges within Granges object
19 days ago by Alex Reynolds 35k
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0
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373
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Comment: Comment: Bedtools merge minimum overlap?
4 weeks ago by Alex Reynolds 35k
2
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2
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988
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Answer: Answer: Create a new bed file with all pairwise combinations between two other bed files
5 weeks ago by Alex Reynolds 35k
4
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1
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2.4k
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Comment: Comment: Bioinformatician who was retaliated against after reporting discriminatory haras
6 weeks ago by Alex Reynolds 35k
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0
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352
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Answer: Answer: How to highlight genes on genome visual reprezentation/what tool to use?
7 weeks ago by Alex Reynolds 35k
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0
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7.8k
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Comment: Comment: Intersect multiple BED files
9 weeks ago by Alex Reynolds 35k
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1
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492
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Comment: Comment: Coverage depth map of genome from multiple sample coverage bedgraphs?
9 weeks ago by Alex Reynolds 35k
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0
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394
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Answer: Answer: Error occurs when migrate-n software performs "make mpis"
9 weeks ago by Alex Reynolds 35k
0
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1
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492
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Comment: Comment: Coverage depth map of genome from multiple sample coverage bedgraphs?
9 weeks ago by Alex Reynolds 35k
1
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1
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492
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Answer: Answer: Coverage depth map of genome from multiple sample coverage bedgraphs?
9 weeks ago by Alex Reynolds 35k
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0
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898
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Answer: Answer: Convert Gene symbol to Ensembl ID
11 weeks ago by Alex Reynolds 35k
1
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0
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517
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Comment: Comment: Genes with multiple chromosome locations
12 weeks ago by Alex Reynolds 35k
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1
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898
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Comment: Comment: Convert Gene symbol to Ensembl ID
12 weeks ago by Alex Reynolds 35k
0
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1
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898
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Comment: Comment: Convert Gene symbol to Ensembl ID
3 months ago by Alex Reynolds 35k
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0
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18k
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Comment: Comment: BEDOPS gtf2bed conversion error with Ensembl GTF
3 months ago by Alex Reynolds 35k
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0
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521
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Comment: Comment: line 164: 15342 Segmentation fault (core dumped) ${cmd} ${options} - 0<&0
3 months ago by Alex Reynolds 35k
2
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0
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521
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Answer: Answer: line 164: 15342 Segmentation fault (core dumped) ${cmd} ${options} - 0<&0
3 months ago by Alex Reynolds 35k
0
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0
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903
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Comment: Comment: Random Access remote BAM files
3 months ago by Alex Reynolds 35k
0
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1
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903
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Comment: Comment: Random Access remote BAM files
3 months ago by Alex Reynolds 35k
0
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1
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903
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Comment: Comment: Random Access remote BAM files
3 months ago by Alex Reynolds 35k
1
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1
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903
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Answer: Answer: Random Access remote BAM files
3 months ago by Alex Reynolds 35k
2
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1
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503
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Answer: Answer: Double counts with bedtools intersect?
4 months ago by Alex Reynolds 35k
0
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0
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1.5k
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Comment: Comment: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
4 months ago by Alex Reynolds 35k
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1
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1.5k
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Comment: Comment: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
4 months ago by Alex Reynolds 35k
1
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1
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1.5k
views
Answer: Answer: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
4 months ago by Alex Reynolds 35k
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0
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403
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Answer: Answer: identify genes
5 months ago by Alex Reynolds 35k
1
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2
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1.9k
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Comment: Comment: PanDepth, an ultra-fast and efficient genomic tool for coverage calculation
5 months ago by Alex Reynolds 35k
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0
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660
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Comment: Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
5 months ago by Alex Reynolds 35k
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0
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660
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Comment: Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
5 months ago by Alex Reynolds 35k
3
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2
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660
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Answer: Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
5 months ago by Alex Reynolds 35k
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1
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3.7k
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Comment: Comment: Decoding MM and ML tags in .SAM file
6 months ago by Alex Reynolds 35k
1
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0
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856
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Answer: Answer: Filter a BED file based on genome coordinates for gene names
6 months ago by Alex Reynolds 35k
1
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0
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443
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Answer: Answer: distance between chip peaks and individual TSS
6 months ago by Alex Reynolds 35k
0
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0
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659
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Answer: Answer: Simple tools for creation of figures of gene and protein structure
7 months ago by Alex Reynolds 35k
0
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0
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558
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Answer: Answer: Visualize raw rna fastq file and aligned bam file
7 months ago by Alex Reynolds 35k
1
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1
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6.3k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by Alex Reynolds 35k
0
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1
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1.3k
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Comment: Comment: Getting the overlap between two GTF files
8 months ago by Alex Reynolds 35k
0
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1
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1.3k
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Comment: Comment: Getting the overlap between two GTF files
8 months ago by Alex Reynolds 35k
0
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0
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1.3k
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Answer: Answer: Getting the overlap between two GTF files
8 months ago by Alex Reynolds 35k
1
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1
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706
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Comment: Comment: Mapping SNP rsIds/ positions to genes coding for proteins
8 months ago by Alex Reynolds 35k
1
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1
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706
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Answer: Answer: Mapping SNP rsIds/ positions to genes coding for proteins
8 months ago by Alex Reynolds 35k
0
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0
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803
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Answer: Answer: BED files
8 months ago by Alex Reynolds 35k
1
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1
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981
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Comment: Comment: Filter human transcription factors
8 months ago by Alex Reynolds 35k
0
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1
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1.7k
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Comment: Comment: Read block operation failed with BAM file
8 months ago by Alex Reynolds 35k
0
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0
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480
views
Answer: Answer: Visualize where kmers are on a reference genome
8 months ago by Alex Reynolds 35k
0
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0
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1.7k
views
Comment: Comment: Read block operation failed with BAM file
8 months ago by Alex Reynolds 35k
2
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8
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1.7k
views
Read block operation failed with BAM file
bgzip samtools bam pysam htslib
updated 8 months ago by 3.1k • written 8 months ago by 35k
2
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0
replies
778
views
Answer: Answer: Create 10,000bp windows for a SNP file and assign each SNP to its respective win
8 months ago by Alex Reynolds 35k
2,877 results • Page 1 of 58
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