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5
votes
5
replies
357
views
Problem with data downloaded from Short Reads Archive (SRA)
SRA DADA2 metabarcoding
updated 16 days ago by ▴ 40 • written 17 days ago by ▴ 150
0
votes
2
replies
357
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Comment: Comment: Problem with data downloaded from Short Reads Archive (SRA)
17 days ago by Begonia_pavonina ▴ 150
0
votes
2
replies
349
views
BLAST using both nucleotides and taxonomic local databases
blast ncbi taxid taxonomy
updated 23 days ago by 142k • written 24 days ago by ▴ 150
0
votes
1
reply
547
views
Comment: Comment: Odd results with BLAST remote
4 weeks ago by Begonia_pavonina ▴ 150
0
votes
0
replies
547
views
Comment: Comment: Odd results with BLAST remote
4 weeks ago by Begonia_pavonina ▴ 150
0
votes
0
replies
547
views
Comment: Comment: Odd results with BLAST remote
4 weeks ago by Begonia_pavonina ▴ 150
4
votes
6
replies
547
views
Odd results with BLAST remote
blast remote NCBI
updated 4 weeks ago by ▴ 200 • written 4 weeks ago by ▴ 150
1
vote
3
replies
457
views
Extracting data from a local NCBI taxonomy database
R NCBI xml E-utilities Blast
updated 5 weeks ago by ▴ 60 • written 6 weeks ago by ▴ 150
0
votes
0
replies
458
views
Answer: Answer: Extracting data from a local NCBI taxonomy database
6 weeks ago by Begonia_pavonina ▴ 150
0
votes
0
replies
261
views
Comment: Comment: Issue with making local BLAST database
updated 7 weeks ago by 43k • written 7 weeks ago by ▴ 150
1
vote
2
replies
261
views
Issue with making local BLAST database
R mitochodrial diatoms blast ncbi
updated 7 weeks ago by 43k • written 7 weeks ago by ▴ 150
0
votes
0
replies
640
views
Comment: Comment: Blast NCBI online using R
7 weeks ago by Begonia_pavonina ▴ 150
0
votes
1
reply
640
views
Comment: Comment: Blast NCBI online using R
11 weeks ago by Begonia_pavonina ▴ 150
0
votes
0
replies
504
views
Comment: Comment: Blastn frozen
3 months ago by Begonia_pavonina ▴ 150
0
votes
0
replies
504
views
Comment: Comment: Blastn frozen
3 months ago by Begonia_pavonina ▴ 150
4
votes
5
replies
504
views
Blastn frozen
blastn NCBI BLAST remote-blast
3 months ago by Begonia_pavonina ▴ 150
0
votes
0
replies
640
views
Comment: Comment: Blast NCBI online using R
3 months ago by Begonia_pavonina ▴ 150
3
votes
7
replies
640
views
Blast NCBI online using R
R NCBI BLAST Rstudio
7 weeks ago by Begonia_pavonina ▴ 150
0
votes
0
replies
567
views
Comment: Comment: Formatting issues using DADA2 with the database EukRIbo
3 months ago by Begonia_pavonina ▴ 150
1
vote
3
replies
567
views
Formatting issues using DADA2 with the database EukRIbo
DADA2 Silva fasta metabarcoding EukRibo
3 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
567
views
Answer: Answer: Formatting issues using DADA2 with the database EukRIbo
4 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
1.3k
views
Answer: Answer: Problem with Mamba
4 months ago by Begonia_pavonina ▴ 150
7
votes
8
replies
1.3k
views
Problem with Mamba
snakemake mamba conda
updated 4 months ago by ▴ 80 • written 4 months ago by ▴ 150
0
votes
1
reply
604
views
Comment: Comment: Snakemake error AttributeError: 'Resources' object has no attribute 'tmpdir'
5 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
604
views
Comment: Comment: Snakemake error AttributeError: 'Resources' object has no attribute 'tmpdir'
updated 5 months ago by 142k • written 5 months ago by ▴ 150
0
votes
4
replies
604
views
Snakemake error AttributeError: 'Resources' object has no attribute 'tmpdir'
Python BWA Snakemake
updated 5 months ago by 13k • written 5 months ago by ▴ 150
1
vote
0
replies
820
views
Comment: Comment: Samtools index not working in Snakemake
6 months ago by Begonia_pavonina ▴ 150
3
votes
2
replies
820
views
Samtools index not working in Snakemake
snakemake samtools
updated 6 months ago by 13k • written 6 months ago by ▴ 150
0
votes
1
reply
611
views
Comment: Comment: Conda environment not named
6 months ago by Begonia_pavonina ▴ 150
0
votes
0
replies
611
views
Comment: Comment: Conda environment not named
6 months ago by Begonia_pavonina ▴ 150
5
votes
4
replies
611
views
Conda environment not named
snakemake conda
updated 6 months ago by 43k • written 6 months ago by ▴ 150
0
votes
0
replies
1.3k
views
Comment: Comment: Snakemake issue with wrappers
6 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
1.3k
views
Comment: Comment: Snakemake issue with wrappers
6 months ago by Begonia_pavonina ▴ 150
4
votes
9
replies
1.3k
views
Snakemake issue with wrappers
Python Snakemake
6 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
1.3k
views
Comment: Comment: Snakemake issue with wrappers
6 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
1.3k
views
Comment: Comment: Snakemake issue with wrappers
6 months ago by Begonia_pavonina ▴ 150
0
votes
0
replies
1.3k
views
Comment: Comment: Snakemake issue with wrappers
6 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
975
views
Comment: Comment: Wildcards in Snakemake
7 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
975
views
Comment: Comment: Wildcards in Snakemake
7 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
975
views
Comment: Comment: Wildcards in Snakemake
7 months ago by Begonia_pavonina ▴ 150
0
votes
2
replies
975
views
Comment: Comment: Wildcards in Snakemake
7 months ago by Begonia_pavonina ▴ 150
5
votes
9
replies
975
views
Wildcards in Snakemake
Python workflow Snakemake wrapper
updated 7 months ago by 22k • written 7 months ago by ▴ 150
1
vote
1
reply
472
views
Manage the wrappers in Snakemake
snakemake python
updated 7 months ago by 43k • written 7 months ago by ▴ 150
0
votes
0
replies
891
views
Comment: Comment: Snakemake alignment script
7 months ago by Begonia_pavonina ▴ 150
4
votes
5
replies
891
views
Snakemake alignment script
snakemake alignment
7 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
891
views
Comment: Comment: Snakemake alignment script
7 months ago by Begonia_pavonina ▴ 150
0
votes
0
replies
891
views
Comment: Comment: Snakemake alignment script
7 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
1.1k
views
Comment: Comment: The GATK "The given bam input has no sample names." error
9 months ago by Begonia_pavonina ▴ 150
0
votes
2
replies
1.1k
views
Comment: Comment: The GATK "The given bam input has no sample names." error
9 months ago by Begonia_pavonina ▴ 150
3
votes
6
replies
1.1k
views
The GATK "The given bam input has no sample names." error
GATK BWA
updated 9 months ago by 142k • written 9 months ago by ▴ 150
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