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3
votes
6
replies
1.1k
views
The GATK "The given bam input has no sample names." error
GATK BWA
updated 9 months ago by 142k • written 9 months ago by ▴ 150
0
votes
0
replies
1.5k
views
Comment: Comment: From VCF to BEAGLE format with multiple chromosomes
12 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
1.5k
views
Comment: Comment: From VCF to BEAGLE format with multiple chromosomes
12 months ago by Begonia_pavonina ▴ 150
2
votes
1
reply
781
views
Calculate the kinship matrix from NGS data
PCangsd kinship BEAGLE ANGSD
updated 14 months ago by 10k • written 14 months ago by ▴ 150
0
votes
0
replies
781
views
How to get BEAGLE files from VCF with angsd?
angsd vcf populationgenetics beagle pcangsd
14 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
979
views
Comment: Comment: Using vcfR to group variants per annotations
15 months ago by Begonia_pavonina ▴ 150
3
votes
3
replies
979
views
Using vcfR to group variants per annotations
vcf vcfR R
updated 15 months ago by ★ 2.0k • written 15 months ago by ▴ 150
0
votes
0
replies
1.3k
views
Comment: Comment: Filter out overlapping deletions from a VCF file.
15 months ago by Begonia_pavonina ▴ 150
0
votes
1
reply
1.3k
views
Comment: Comment: Filter out overlapping deletions from a VCF file.
15 months ago by Begonia_pavonina ▴ 150
1
vote
4
replies
1.3k
views
Filter out overlapping deletions from a VCF file.
vcf bcftools gvcf
15 months ago by Begonia_pavonina ▴ 150
0
votes
4
replies
1.5k
views
From VCF to BEAGLE format with multiple chromosomes
vcf vcftools beagle gvcf
12 months ago by Begonia_pavonina ▴ 150
0
votes
0
replies
409
views
Plot Phylogenetic tree with traits in Biopython
Biopython Phylo Python Phylogeny
19 months ago by Begonia_pavonina ▴ 150
1
vote
1
reply
1.2k
views
Labels colors in Bio.Phylo
Bio.Phylo Python BioPython
updated 19 months ago by 3.2k • written 19 months ago by ▴ 150
1
vote
0
replies
1.2k
views
Comment: Comment: Bootstraps values in iqtree
19 months ago by Begonia_pavonina ▴ 150
3
votes
2
replies
1.2k
views
Bootstraps values in iqtree
iqtree
19 months ago by Begonia_pavonina ▴ 150
5
votes
4
replies
1.8k
views
IQ-TREE stuck in selecting a substitution model with ModelFinder
substitution ModelFInder model IQ-TREE
updated 12 months ago by ▴ 880 • written 22 months ago by ▴ 150
0
votes
1
reply
1.8k
views
Comment: Comment: IQ-TREE stuck in selecting a substitution model with ModelFinder
22 months ago by Begonia_pavonina ▴ 150
0
votes
2
replies
1.5k
views
Answer: Answer: GenotypeGVCF too many genotypes from pooled samples
23 months ago by Begonia_pavonina ▴ 150
0
votes
0
replies
7.9k
views
Comment: Comment: Question about ROH analysis by Plink 1.9
23 months ago by Begonia_pavonina ▴ 150
0
votes
0
replies
4.4k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Begonia_pavonina ▴ 150
0
votes
1
reply
4.4k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Begonia_pavonina ▴ 150
0
votes
1
reply
4.4k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Begonia_pavonina ▴ 150
0
votes
2
replies
4.4k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Begonia_pavonina ▴ 150
7
votes
12
replies
4.4k
views
Snakemake 'Unexpected keyword ref in rule definition'
snakemake python
updated 2.3 years ago by 21k • written 2.3 years ago by ▴ 150
0
votes
1
reply
4.4k
views
Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Begonia_pavonina ▴ 150
0
votes
0
replies
818
views
Comment: Comment: Multiple samples in PLINK
2.4 years ago by Begonia_pavonina ▴ 150
1
vote
2
replies
818
views
Multiple samples in PLINK
gvcf plink roh variants
2.4 years ago by Begonia_pavonina ▴ 150
2
votes
0
replies
3.7k
views
Comment: Comment: gVCF files into Plink!
2.4 years ago by Begonia_pavonina ▴ 150
0
votes
0
replies
1.4k
views
Comment: Comment: Confused about PED and MAP file
2.4 years ago by Begonia_pavonina ▴ 150
1
vote
2
replies
1.4k
views
Confused about PED and MAP file
PED PLINK MAP detectRUNS
2.4 years ago by Begonia_pavonina ▴ 150
0
votes
0
replies
7.9k
views
Comment: Comment: Question about ROH analysis by Plink 1.9
2.5 years ago by Begonia_pavonina ▴ 150
0
votes
0
replies
462
views
Label groups with samples names in snpgdsDrawTree (SNPRelate package)
SNPRelate
2.5 years ago by Begonia_pavonina ▴ 150
0
votes
0
replies
2.0k
views
Comment: Comment: No header in VCF file
2.6 years ago by Begonia_pavonina ▴ 150
1
vote
2
replies
2.0k
views
No header in VCF file
VCF bcftools header
2.6 years ago by Begonia_pavonina ▴ 150
0
votes
0
replies
761
views
Comment: Comment: Plotting chromosomes and target capture baits
2.7 years ago by Begonia_pavonina ▴ 150
1
vote
2
replies
761
views
Plotting chromosomes and target capture baits
plotting target_capture Hyb-Seq R
2.7 years ago by Begonia_pavonina ▴ 150
0
votes
1
reply
2.1k
views
Missing read group in BAM files
BWA ValidateSamFile BAM GATK HybPiper
updated 2.8 years ago by 14k • written 2.8 years ago by ▴ 150
2
votes
1
reply
1.0k
views
Find and replace the RNAME field in BAM/SAM file
samtools bam loop sed sam
updated 3.0 years ago by 142k • written 3.0 years ago by ▴ 150
0
votes
0
replies
444
views
KeyError in the pipeline SECAPR
SECAPR Hyb-Seq locus_selection Python Key_error
3.1 years ago by Begonia_pavonina ▴ 150
0
votes
0
replies
533
views
SECAPR issue
SECAPR reads trimmomatic pipeline alignement
3.1 years ago by Begonia_pavonina ▴ 150
3
votes
8
replies
2.4k
views
blast2gff IndexError: list index out of range
blast2gff GFF BLAST Python blastn
updated 2.8 years ago by • 0 • written 3.8 years ago by ▴ 150
0
votes
0
replies
3.0k
views
Comment: C: merging overlaping ranges with GenomicRanges
3.6 years ago by Begonia_pavonina ▴ 150
0
votes
0
replies
3.0k
views
Comment: C: merging overlaping ranges with GenomicRanges
3.6 years ago by Begonia_pavonina ▴ 150
5
votes
7
replies
1.2k
views
Replace FASTA file headers
fasta FASTA sed loop
updated 3.6 years ago by 21k • written 3.6 years ago by ▴ 150
0
votes
0
replies
1.7k
views
Comment: C: Keep metadata gc column using GenomicRanges
3.6 years ago by Begonia_pavonina ▴ 150
0
votes
1
reply
1.2k
views
Comment: C: Replace FASTA file headers
3.6 years ago by Begonia_pavonina ▴ 150
2
votes
2
replies
1.7k
views
Keep metadata gc column using GenomicRanges
ranges Iranges R
3.6 years ago by Begonia_pavonina ▴ 150
4
votes
4
replies
3.0k
views
merging overlaping ranges with GenomicRanges
R blast GenomicRanges range
updated 3.7 years ago by 22k • written 3.7 years ago by ▴ 150
0
votes
0
replies
708
views
Answer: A: How to build my resource-bundle for variant recalibrator?
3.7 years ago by Begonia_pavonina ▴ 150
3
votes
1
reply
2.2k
views
Length of scaffolds in a FASTA file
fasta genome bash scaffold
updated 3.7 years ago by 21k • written 3.7 years ago by ▴ 150
130 results • Page 2 of 3
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