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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.7k • written 7.4 years ago by 100k
0
votes
0
replies
70
views
News: Online course: Introduction to Deep Learning
Python Deep-Learning Convolutional-Neural-Network Machine-Learning
updated 10 hours ago by 43k • written 15 hours ago by ★ 2.5k
0
votes
0
replies
107
views
News: Online course. -Time series analysis and Forecasting in R
Time-Series Forecasting R Stastics
1 day ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
245
views
News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering Spatial-transcriptomics
updated 1 day ago by • 0 • written 2 days ago by ▴ 10
0
votes
0
replies
109
views
News: Online course: Bioinformatic analysis of transposable elements
GenomeAssembly Transcriptomics TransposableElements ManualCuration
3 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
1.1k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
4 days ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
138
views
News: Cellosaurus release 49 is available
cell biocuration line database news knowledgebase
6 days ago by Amos Bairoch ▴ 120
0
votes
0
replies
108
views
News: Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding Programming R
updated 6 days ago by 43k • written 6 days ago by ★ 2.5k
0
votes
0
replies
169
views
News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy Python NumPy
updated 8 days ago by 43k • written 8 days ago by • 0
0
votes
0
replies
135
views
News: Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis Statistics R
updated 8 days ago by 43k • written 8 days ago by ★ 2.5k
0
votes
1
reply
297
views
News: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq variant-calling RNA-seq illumina transcriptomics
8 days ago by David Langenberger 11k
0
votes
0
replies
123
views
News: Online course: Genome Annotation
Genome-Assembly Genome-Annotation
9 days ago by carlopecoraro2 ★ 2.5k
3
votes
0
replies
222
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 12 days ago by 43k • written 12 days ago by ▴ 60
0
votes
0
replies
175
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 13 days ago by 43k • written 13 days ago by ★ 2.5k
0
votes
0
replies
133
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 14 days ago by 43k • written 15 days ago by ★ 2.5k
3
votes
0
replies
143
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 15 days ago by 43k • written 15 days ago by ★ 2.5k
0
votes
0
replies
105
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
16 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
149
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 17 days ago by 43k • written 18 days ago by ★ 2.5k
0
votes
0
replies
213
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 20 days ago by 43k • written 20 days ago by ★ 2.5k
0
votes
0
replies
195
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 20 days ago by 43k • written 20 days ago by ★ 2.5k
0
votes
0
replies
194
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 22 days ago by 43k • written 22 days ago by 11k
0
votes
0
replies
159
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 23 days ago by 43k • written 23 days ago by ▴ 380
0
votes
0
replies
193
views
News: Online course: Network Analysis in R
NetworkAnalyis R
24 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
198
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 27 days ago by 43k • written 27 days ago by ★ 2.5k
1
vote
0
replies
143
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 27 days ago by 43k • written 27 days ago by ▴ 70
2
votes
0
replies
137
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 27 days ago by 43k • written 27 days ago by ▴ 70
2
votes
0
replies
137
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 27 days ago by 43k • written 27 days ago by ▴ 70
2
votes
0
replies
126
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
28 days ago by Transmitting Science communication ▴ 70
12
votes
2
replies
490
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
29 days ago by David Langenberger 11k
2
votes
0
replies
133
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 29 days ago by 43k • written 29 days ago by ★ 2.5k
0
votes
0
replies
133
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
1
vote
0
replies
191
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
6 days ago by carlopecoraro2 ★ 2.5k
8
votes
2
replies
823
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
4 weeks ago by David Langenberger 11k
0
votes
0
replies
159
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
159
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
5 weeks ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
618
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
5 weeks ago by Johannes W. Dietrich • 0
0
votes
0
replies
221
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
185
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
181
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
6 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
172
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
164
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
245
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
7 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
185
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
7 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
286
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 8 weeks ago by • 0 • written 3 months ago by ▴ 10
1
vote
0
replies
213
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
8 weeks ago by David Langenberger 11k
0
votes
0
replies
165
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 2.5k
0
votes
0
replies
169
views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
8 weeks ago by sina.majidian ▴ 20
1
vote
0
replies
171
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
9 weeks ago by David Langenberger 11k
1
vote
1
reply
215
views
News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 9 weeks ago by 43k • written 9 weeks ago by • 0
0
votes
0
replies
201
views
News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
1,000 results • Page 1 of 20
Recent Votes
Answer: Can I merge Hi-C fastq files from different lanes?
A: How to get SNP identifiers from VCF file?
Answer: How can I analyze normalized expression data?
Answer: How can I analyze normalized expression data?
Answer: Pruning Phylogenetic Trees and Bootstrap Values
Difference between Pysam Pileup and Fetch
Answer: Where can I download some example BAM files?
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Recent Replies
Answer: Importing a fastq file by oumo • 0
The fastq file is in my local disk, and I want to upload it to Ubuntu
Comment: Conda severely broken after attempting mamba install by andres.firrincieli 3.6k
I have been there... I just reinstalled conda.
Comment: Importing a fastq file by marco.barr ▴ 90
That's right.. With `cp` command from terminal cp /mnt/c/path/to/your/fastq/file.fastq /path/in/wsl/
Comment: Copy number Variation analysis using conumee by zylcc2 • 0
if your seqnames include "chrX" or "chrY", should add "chrXY=TRUE". like this : anno_combine <- CNV.create_anno(bin_minprobes = 15, bin_min…
Comment: Importing a fastq file by ATpoint 82k
Windows is mounted as `/mnt/c/...` in WSL (at least in WSL2).
Answer: Importing a fastq file by marco.barr ▴ 90
Can you explain better what you mean? If I understand correctly, your fastq file must be in the Ubuntu home folder of your wsl to be able t…
Answer: Seurat CellCycleScoring – confused about the proper order of operations when usi by Li • 0
I‘m not an expert in sctransform or cellcyclescoring. But I think it's because sctransform creates a new assay named "SCT", which is differ…
Comment: How can I analyze normalized expression data? by mnx0723 • 0
thank you for comment
Comment: Pruning Phylogenetic Trees and Bootstrap Values by Zeng Hao ▴ 40
Dear Klaus, Thank you for the reply. If I could clarify with an example: With this tree, B0----------------- A -| B1----------…
Answer: Contig assembly task, errors by Philipp Bayer 8.4k
Feels a bit strange for an aptitude test, feels more like homework. 1) seems OK to me, just chuck them into CAP3 and see what falls out.…
Comment: Help with Biopython for Beginner by Pierre Lindenbaum 161k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
Answer: bcftools - reducing to "sites-only"? by Pierre Lindenbaum 161k
bcftools view -G in.vcf.gz <!-- Diabetic foot ulceration (DFU) is a devastating complication of diabetes whose pathogenesis rema…
Comment: Filtering Multi-sample VCF file for all except one Genotype by schmince • 0
I probably got some of the vocabulary wrong. I thought that "Dom HOR2932 HOR3036 HOR3726 KWSBambina Rec S42IL_124" were representing my ge…
Comment: featureCounts output assigned value higher than and HISAT2 mapping. by Ram 43k
It's featureCount**s**, not featureCount. I've edited your post and fixed all mentions of featureCounts.
Comment: kinannote software installation problems by Emanoelle • 0
Hey, I know it's been 5 years but I have the same issue. When I run the test the software is unable to perform and always deliver the follo…
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