updated 17 hours ago by
Ram
43k
•
written 21 hours ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
84
views
0
votes
0
replies
108
views
1 day ago by
carlopecoraro2
★
2.5k
1
vote
2
replies
245
views
0
votes
0
replies
109
views
1
vote
2
replies
1.1k
views
4 days ago by
Zhenyu Zhang
★
1.2k
0
votes
0
replies
138
views
6 days ago by
Amos Bairoch
▴
120
0
votes
0
replies
108
views
updated 6 days ago by
Ram
43k
•
written 7 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
169
views
0
votes
0
replies
135
views
updated 9 days ago by
Ram
43k
•
written 9 days ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
297
views
0
votes
0
replies
124
views
10 days ago by
carlopecoraro2
★
2.5k
3
votes
0
replies
223
views
updated 12 days ago by
Ram
43k
•
written 13 days ago by
Claire Watson
▴
60
0
votes
0
replies
176
views
updated 13 days ago by
Ram
43k
•
written 13 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
133
views
updated 14 days ago by
Ram
43k
•
written 15 days ago by
carlopecoraro2
★
2.5k
3
votes
0
replies
143
views
updated 15 days ago by
Ram
43k
•
written 15 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
105
views
17 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
150
views
updated 17 days ago by
Ram
43k
•
written 18 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
213
views
updated 20 days ago by
Ram
43k
•
written 21 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
195
views
updated 20 days ago by
Ram
43k
•
written 21 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
194
views
0
votes
0
replies
159
views
0
votes
0
replies
194
views
25 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
200
views
updated 27 days ago by
Ram
43k
•
written 27 days ago by
carlopecoraro2
★
2.5k
1
vote
0
replies
145
views
2
votes
0
replies
139
views
2
votes
0
replies
139
views
updated 27 days ago by
Ram
43k
•
written 28 days ago by
Transmitting Science communication
▴
70
2
votes
0
replies
126
views
29 days ago by
Transmitting Science communication
▴
70
12
votes
2
replies
491
views
2
votes
0
replies
136
views
updated 29 days ago by
Ram
43k
•
written 29 days ago by
carlopecoraro2
★
2.5k
1
vote
0
replies
191
views
7 days ago by
carlopecoraro2
★
2.5k
Recent Votes
Recent Locations •
All
Czechia, 2 minutes ago
outer space, 3 minutes ago
Belarus, 4 minutes ago
Russia, 6 minutes ago
United States, 7 minutes ago
Italy, 8 minutes ago
NEW YORK, 9 minutes ago
Recent Awards •
All
Popular Question to
ManuelDB
▴
80
Popular Question to
nkls063408
•
0
Popular Question to
rj.rezwan
•
0
Scholar to
Pierre Lindenbaum
161k
Popular Question to
Albert
•
0
Popular Question to
Gordon Smyth
★
7.1k
Recent Replies
Comment: How to analyze Infinium Mouse Methylation BeadChip array data?
by
Tawny
▴
180
Did you get this figured out? I am having the same error in R.
Answer: JASPAR2024_getMatrixSet error
by
Raghad
•
0
Try this:
#Read the motifs
library(JASPAR2024)
library(TFBSTools)
jaspar <- JASPAR2024()
sq24 <- RSQLite::dbCo…
Answer: How to convert normalized BigWig file to count matrix?
by
ATpoint
82k
It's not possible. Gene counts are a region aggregate, bigwigs are a per-base readout and you cannot use normalized counts for mentioned to…
Comment: bcftools - reducing to "sites-only"?
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: bcftools - reducing to "sites-only"?
by
Matthew
•
0
Thank you Pierre!
Not sure why I didn't notice that (I should have)
Comment: How to convert normalized BigWig file to count matrix?
by
Pierre Lindenbaum
161k
bigwig is chrom/start/end/value . what kind of matrix do you want ?
Comment: How to convert normalized BigWig file to count matrix?
by
feather-W
•
0
I want to use the matrix derived from bigwig files to perform different analysis by DESeq2 or edgeR.
Answer: Have you ever obtained user guide of ExomeCNV?
by
michael.s
▴
10
I have uploaded the ExomeCNV (v1.4) user manual [here][1].
[1]: https://fastupload.io/hZbU
Answer: Server or aws cloud- which one is better for gatk pipeline
by
GenoMax
142k
I assume you mean "server" as in local hardware that you own/control since "cloud" is a just bunch of servers on internet that you rent (pa…
Answer: Server or aws cloud- which one is better for gatk pipeline
by
Michael
54k
I think that is more a matter of convenience and legality. It mostly depends on who pays for it and what you prefer. Both solutions should …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Pierre Lindenbaum
161k
> could you please explain what the collate does?
http://www.htslib.org/doc/samtools-collate.html
Comment: ComBat_Seq stuck adjusting the data
by
Jaïr
•
0
Same keeps happening to me; but it is weird, I corrected the batch effect with the same exact function a few months ago and worked fine. I …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Lila M
★
1.2k
Thank you for the feedback! I already used just the `samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R0.fq.gz`. Could you please exp…
Comment: Nextflow: how to get the process work dir, within the process
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Pierre Lindenbaum
161k
faster use samtools collate+ fastq
samtools collate -uOn128 in.bam TMPDIR | samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R…
Traffic: 2521 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6