Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.6k
views
Comment: Comment: First experiences matter
9 months ago by Michael Love ★ 2.6k
0
votes
0
replies
2.6k
views
Comment: Comment: First experiences matter
9 months ago by Michael Love ★ 2.6k
3
votes
2
replies
2.6k
views
Comment: Comment: First experiences matter
9 months ago by Michael Love ★ 2.6k
1
vote
0
replies
1.3k
views
Comment: Comment: Number of accessible regions included by DESeq2 to generate the PCA plot with th
13 months ago by Michael Love ★ 2.6k
1
vote
0
replies
1.4k
views
Answer: Answer: Pre-Filtering and Independent Filtering DESeq2
15 months ago by Michael Love ★ 2.6k
2
votes
0
replies
1.5k
views
Comment: Comment: How reproducible is transcript quantification through salmon?
updated 15 months ago by 85k • written 15 months ago by ★ 2.6k
1
vote
2
replies
2.5k
views
Answer: Answer: error with Tximport when txOut = TRUE
15 months ago by Michael Love ★ 2.6k
0
votes
0
replies
2.6k
views
Comment: Comment: DESeq2 error while using apeglm - optimHess
18 months ago by Michael Love ★ 2.6k
0
votes
0
replies
942
views
Comment: Comment: How does salmon uses polyester?
18 months ago by Michael Love ★ 2.6k
0
votes
0
replies
12k
views
Comment: Comment: fold change vs standardized effect size
2.3 years ago by Michael Love ★ 2.6k
0
votes
0
replies
1.9k
views
Comment: Comment: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
2.3 years ago by Michael Love ★ 2.6k
1
vote
0
replies
1.4k
views
Comment: Comment: lfcShrink MA plot comparison
2.6 years ago by Michael Love ★ 2.6k
0
votes
0
replies
2.9k
views
Comment: Comment: DESeq2 shrinking log fold-change
2.7 years ago by Michael Love ★ 2.6k
0
votes
1
reply
2.9k
views
Comment: Comment: DESeq2 shrinking log fold-change
2.7 years ago by Michael Love ★ 2.6k
0
votes
1
reply
2.9k
views
Answer: Answer: DESeq2 shrinking log fold-change
2.7 years ago by Michael Love ★ 2.6k
0
votes
1
reply
1.9k
views
Answer: Answer: DESeq2/Differential expression analysis without replicates
2.7 years ago by Michael Love ★ 2.6k
6
votes
1
reply
1.3k
views
Answer: Answer: Is there a minimum read count or number of genes for Salmon bias correction?
2.7 years ago by Michael Love ★ 2.6k
0
votes
0
replies
1.0k
views
Comment: Comment: fishpond RNA-seq analysis: Two genotype and four treatments
2.7 years ago by Michael Love ★ 2.6k
1
vote
1
reply
1.0k
views
Answer: Answer: fishpond RNA-seq analysis: Two genotype and four treatments
2.8 years ago by Michael Love ★ 2.6k
2
votes
0
replies
1.4k
views
Answer: Answer: salmon quantification and then generating BAM files using STAR
2.8 years ago by Michael Love ★ 2.6k
0
votes
0
replies
1.3k
views
Answer: Answer: Mendelian Randomisation with GTEx data
2.8 years ago by Michael Love ★ 2.6k
4
votes
0
replies
1.4k
views
Answer: Answer: DEG analysis from Salmon quantification of 3' TagSeq reads with unannotated refe
2.8 years ago by Michael Love ★ 2.6k
2
votes
0
replies
2.2k
views
Answer: Answer: how to understand the P value of the Deseq2 results
3.5 years ago by Michael Love ★ 2.6k
4
votes
0
replies
1.4k
views
Comment: C: Gene ID problems when mapping and counting
3.6 years ago by Michael Love ★ 2.6k
1
vote
0
replies
2.3k
views
Answer: A: DESEq2 error - 'DESeqDataSet' object superclass 'RectangularData' not defined in
3.7 years ago by Michael Love ★ 2.6k
1
vote
0
replies
3.1k
views
Answer: C: How is the bootstrapping information from kallisto treated in DeSeq2 when import
4.1 years ago by Michael Love ★ 2.6k
2
votes
1
reply
4.5k
views
Comment: C: DESeq2 analysis with covariates with and without log transformation
4.3 years ago by Michael Love ★ 2.6k
1
vote
1
reply
4.5k
views
Answer: A: DESeq2 analysis with covariates with and without log transformation
4.3 years ago by Michael Love ★ 2.6k
1
vote
1
reply
2.4k
views
Comment: C: Transcript level counts from full length scRNA data
4.3 years ago by Michael Love ★ 2.6k
1
vote
0
replies
3.0k
views
Comment: C: When should one be concerned about the CG content in RNA-seq experiment?
4.5 years ago by Michael Love ★ 2.6k
7
votes
0
replies
6.0k
views
Answer: A: How to import RSEM results to DESeq2 for differential analysis
updated 4.7 years ago by 85k • written 6.9 years ago by ★ 2.6k
2
votes
1
reply
11k
views
Answer: C: Is a simple Wilcoxon rank sum test good enough to identify differentially expres
4.7 years ago by Michael Love ★ 2.6k
0
votes
1
reply
6.3k
views
Comment: C: Reviewing a MOOC: HarvardX - PH525x Data Analysis for Genomics
updated 4.8 years ago by 44k • written 10.4 years ago by ★ 2.6k
2
votes
1
reply
6.3k
views
Comment: C: Reviewing a MOOC: HarvardX - PH525x Data Analysis for Genomics
updated 4.8 years ago by 44k • written 10.4 years ago by ★ 2.6k
0
votes
1
reply
9.2k
views
Answer: A: To What Degree Could We Determine Whether A Gene Is Expressed?
updated 4.8 years ago by 44k • written 10.5 years ago by ★ 2.6k
1
vote
0
replies
5.9k
views
Comment: C: R Deseq2 Error: Inv(): Matrix Appears To Be Singular
updated 4.8 years ago by 44k • written 10.5 years ago by ★ 2.6k
1
vote
1
reply
7.1k
views
Comment: C: DESeq2 multiple factor design clarification
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 2.6k
0
votes
0
replies
1.5k
views
Comment: C: model design in rna seq - deseq2
5.6 years ago by Michael Love ★ 2.6k
5
votes
1
reply
34k
views
Comment: C: How is the design in DESeq2 work?
5.9 years ago by Michael Love ★ 2.6k
0
votes
0
replies
2.7k
views
Comment: C: Pair-wise DESeq Analysis with 3 Factor Levels - RNA-Seq
6.0 years ago by Michael Love ★ 2.6k
3
votes
2
replies
4.4k
views
Answer: Answer: Is inspection and correction of pvalues still needed in DESeq2?
updated 23 months ago by 44k • written 9.3 years ago by ★ 2.6k
1
vote
2
replies
8.3k
views
Answer: A: "Duplicate rownames not allowed" when the rownames are not duplicated
6.0 years ago by Michael Love ★ 2.6k
0
votes
2
replies
4.6k
views
Comment: C: Deseq2 question of a single factor with 3 levels
6.8 years ago by Michael Love ★ 2.6k
1
vote
0
replies
3.6k
views
Comment: C: Changes log2FC values of DESeq2
6.9 years ago by Michael Love ★ 2.6k
2
votes
1
reply
73k
views
Comment: C: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
6.9 years ago by Michael Love ★ 2.6k
0
votes
0
replies
2.9k
views
Comment: C: Strange distribution of logFC
7.0 years ago by Michael Love ★ 2.6k
0
votes
0
replies
3.4k
views
Comment: C: Zero read count with deseq2
7.0 years ago by Michael Love ★ 2.6k
0
votes
0
replies
2.9k
views
Answer: A: what's the meaning of a Concordance at the Top plot(CAT plot)
7.0 years ago by Michael Love ★ 2.6k
7
votes
1
reply
29k
views
Answer: A: Gene Set Enrichment Analysis after DESeq2
7.0 years ago by Michael Love ★ 2.6k
1
vote
0
replies
4.4k
views
Comment: C: Changes to dispersion estimates in DESeq2?
7.1 years ago by Michael Love ★ 2.6k
131 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6