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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.8k • written 7.5 years ago by 100k
1
vote
0
replies
147
views
News: Course on Manual Genome Curation
Genome-Assembly Pretext-View Manual-Genome-Curation
updated 2 days ago by 43k • written 2 days ago by ★ 2.5k
0
votes
0
replies
87
views
News: New course: Manipulation of NGS Data for Genomic and Population Genetics Analyses
KeepLearning TScourses
4 days ago by Transmitting Science communication ▴ 70
0
votes
2
replies
438
views
News: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq variant-calling RNA-seq illumina transcriptomics
5 days ago by David Langenberger 11k
0
votes
0
replies
130
views
News: Online course: An Introduction to Nanopore Direct RNA Sequencing
Nanopore RNAseq
7 days ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
158
views
News: course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics SNPs LocalAdaptation GIS
9 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
127
views
News: Online course: Introduction to Deep Learning
Python Deep-Learning Convolutional-Neural-Network Machine-Learning
updated 10 days ago by 43k • written 11 days ago by ★ 2.5k
0
votes
0
replies
123
views
News: Online course. -Time series analysis and Forecasting in R
Time-Series Forecasting R Stastics
12 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
288
views
News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering Spatial-transcriptomics
updated 12 days ago by • 0 • written 13 days ago by ▴ 10
0
votes
0
replies
128
views
News: Online course: Bioinformatic analysis of transposable elements
GenomeAssembly Transcriptomics TransposableElements ManualCuration
14 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
1.2k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
14 days ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
150
views
News: Cellosaurus release 49 is available
cell biocuration line database news knowledgebase
16 days ago by Amos Bairoch ▴ 120
0
votes
0
replies
125
views
News: Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding Programming R
updated 17 days ago by 43k • written 17 days ago by ★ 2.5k
0
votes
0
replies
186
views
News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy Python NumPy
updated 19 days ago by 43k • written 19 days ago by • 0
0
votes
0
replies
150
views
News: Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis Statistics R
updated 19 days ago by 43k • written 19 days ago by ★ 2.5k
0
votes
0
replies
139
views
News: Online course: Genome Annotation
Genome-Assembly Genome-Annotation
20 days ago by carlopecoraro2 ★ 2.5k
3
votes
0
replies
243
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 22 days ago by 43k • written 23 days ago by ▴ 60
0
votes
0
replies
188
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 23 days ago by 43k • written 23 days ago by ★ 2.5k
0
votes
0
replies
149
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 24 days ago by 43k • written 25 days ago by ★ 2.5k
3
votes
0
replies
158
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 26 days ago by 43k • written 26 days ago by ★ 2.5k
0
votes
0
replies
127
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
27 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
165
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 28 days ago by 43k • written 28 days ago by ★ 2.5k
0
votes
0
replies
226
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
0
votes
0
replies
208
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
0
votes
0
replies
212
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 4 weeks ago by 43k • written 4 weeks ago by 11k
0
votes
0
replies
176
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 380
0
votes
0
replies
206
views
News: Online course: Network Analysis in R
NetworkAnalyis R
5 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
214
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
1
vote
0
replies
157
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 70
2
votes
0
replies
152
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 70
2
votes
0
replies
153
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 70
2
votes
0
replies
140
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
5 weeks ago by Transmitting Science communication ▴ 70
12
votes
2
replies
518
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
5 weeks ago by David Langenberger 11k
2
votes
0
replies
151
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
146
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
1
vote
0
replies
202
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
17 days ago by carlopecoraro2 ★ 2.5k
8
votes
2
replies
852
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
6 weeks ago by David Langenberger 11k
0
votes
0
replies
176
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
172
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
6 weeks ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
766
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
7 weeks ago by Johannes W. Dietrich • 0
0
votes
0
replies
232
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 7 weeks ago by 43k • written 7 weeks ago by ★ 2.5k
0
votes
0
replies
195
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 7 weeks ago by 43k • written 7 weeks ago by ★ 2.5k
0
votes
0
replies
200
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
188
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
181
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
260
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
9 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
203
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
9 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
299
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 9 weeks ago by • 0 • written 3 months ago by ▴ 10
1
vote
0
replies
231
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
9 weeks ago by David Langenberger 11k
0
votes
0
replies
181
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
1,000 results • Page 1 of 20
Recent Votes
plotting trees in R: node labels from nexus tree files
Interpreting the Jackstraw plot of Seurat
A: How is the design in DESeq2 work?
Error in CIBERSORTx ($ operator is invalid for atomic vectors)
Answer: RNAseq coverage vs depth for transcript isoform expression?
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
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Popular Question to carlopecoraro2 ★ 2.5k
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Recent Replies
Comment: What marks a De-Novo Genome assembly as FAILED? by Umer ▴ 50
Yes. We are sequencing 45 different samples with illumina. 12 of these are also going to be sequenced with Nanopore (for hybrid assembly). …
Comment: HGVS Nomenclature of Multiple Indels found in Cis by LauferVA 4.2k
how has this code progressed? is it publically available? would you want to work together?
Comment: Design for complex RNA-Seq experiment using Deseq2 by Ezequiel • 0
I completely agree with most points. The PCA shows that the biggest driver of difference is the patients themselves, with PRE and POST time…
Comment: Add stats to the plot by marco.barr ▴ 130
Hi, you can add statistical annotations using `ggpubr` function `stat_pvalue_manual `. You need to make sure you calculate the p-values fir…
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from by ATpoint 82k
Use everything before the whitespace in list.txt, for example `A00869:294:HCW57DSXY:2:1101:3929:1000` and not `A00869:294:HCW57DSXY:2:1101:…
Answer: CellRanger output more cells than specified using --force-cells? Why? by scideas ▴ 30
I actually had this same issue with CellRanger v7- turns out that since you have 2 species in your mapping reference, CellRanger is forcing…
Answer: Checking chromosome builds for genotyping data by Muhammad • 0
Assume you have genotype data in Plink format. (G.bed, G.bim, G.fam) Download some reference panel data in Plink format (R.bed, R.bim, R.f…
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors) by nguyenn6 • 0
did you ever figure it out? i'm having the same issue.
Comment: Traveler with Infernal mapping failed by anton.i.petrov • 0
Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
Comment: constructing pangenome through psvcp by analyst ▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform estimation precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.…
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