Entering edit mode
10.2 years ago
alexander.cerwenka
▴
10
Hi all,
I want to do some population genetics using reduced genomic sequence data with little variation between samples. I am analyzing 500 RAD samples in pyRAD versions 3.0.6 dereneaton.com/software/pyrad/) Finally, it completed step 6 (clustering of consensus sequences) but when running step 7 it just produces the .loci and the .excluded_loci files (both files look quite good). However, the pyRAD doesn’t generate any other output-files (and any error messages). D. Eaton (the developer of pyRAD) thinks that my dataset is too large and the program fails due to memory limits. What can I do?
Thanks in advance,
Alex
stacks ?