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written 7 months ago by
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BioSB Course Pattern Recognition (5th edition), 25-29 September 2017, Amsterdam, the Netherlands
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Introducing Omics Logic
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NovaSeq quality analysis
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- C: Is there a software about statistic clean reads length distribution
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Recent Replies
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A: Extracting individual clusters from a Heatmap by
Alex Reynolds ♦ 19k
If you're doing unsupervised *k*-means clustering, you could do something like the following: ...
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C: Is there a software about statistic clean reads length distribution by
genomax ♦ 31k
+1 for creativity. Using BBMap solution may be easier for a giant file.
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C: Can't install sybilSBML by
roschlec • 0
Hi, Besides trying on R, I've tried with the suggested option 1 from the terminal (btw, macOS si...
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A: Is there a software about statistic clean reads length distribution by
Pierre Lindenbaum ♦ 96k
using **gnuplot**: $ curl -sL "https://raw.githubusercontent.com/MedicineAndTheMicrobiome/A...
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C: Extracting individual clusters from a Heatmap by
genomax ♦ 31k
I edited the title of this post so it is easy to find it in future by others.
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A: Is there a software about statistic clean reads length distribution by
EagleEye • 4.3k
[FastQC][1] to check read [length distribution][2] and if you want to only retain reads with cert...
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A: Is there a software about statistic clean reads length distribution by
genomax ♦ 31k
`reformat.sh` from [BBMap Suite][1] used like this: `reformat.sh in=your.fq ihist=filename_you_wa...
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C: #rna-seq 2 tissue, 2 different individual, no replicate, what can i analysis? by
Ace • 0
I suppose with any high-enough coverage/quality RNA-seq sample you can look to do transcriptome a...
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C: #rna-seq 2 tissue, 2 different individual, no replicate, what can i analysis? by
t2g4free • 0
Thx for reply, and what else can I do except DE analyis?
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C: Regarding vcf output by
aays • 20
Glad I could help! And no worries about taking time to understand things - bioinformatics can cer...
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A: Fdist2 via Arlequin by
remi.b.md • 60
Facing similar issues, [Whitlock and Lotterhos 2014][1] have written their own implementation of ...
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C: Difference between Rad-Seq and amplicon seq by
SNPsaurus • 40
A standard RADseq project sequences all regions adjacent to, say, the SbfI cut site. That may be ...
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