news Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: news • reset

or Classic search

284

votes

answers

14k

views

120 follow

answers

News: The Biostar Handbook. A bioinformatics e-book for beginners.

tutorial news training handbook written 9 months ago by Istvan Albert ♦♦ 73k

votes

answers

128

views

answers

News: Our CEO co-authored and is responding today on Reddit: Using large DNA databases to identify the way human populations continue to evolve.

dna genome news dna datasets evolutions datasets written 8 days ago by maria.vazquez • 0

votes

answers

112

views

answers

News: Reproducible Bioinformatics Project

next-gen genome news chip-seq R rna-seq written 8 days ago by raffaele.calogero • 0

votes

answers

107

views

answers

News: Course: Advanced Python for Biologists. Berlin (Germany). 13-17 November 2017

python news bioinformatics programming written 11 days ago by carlopecoraro2 • 510

votes

answers

133

views

answers

News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)

bioinfo-core news written 21 days ago by genomax ♦ 33k

votes

answers

140

views

answers

News: Course on "Genomic data visualisation and manipulation using Python"

genome news next-gen rna-seq written 12 days ago by oliverhooker • 20

votes

answers

110

views

answers

News: Final few places left for course "Bioinformatic using Linux"

next-gen genome news snp rna-seq gene written 12 days ago by oliverhooker • 20

votes

answers

103

views

answers

News: Sequel System Data Release: Iso-Seq Results for Hummingbird and Zebra Finch Brain Tissue

news smrt sequencing iso-seq pacific biosciences written 17 days ago by christian.j.olsen • 0

votes

answers

1.2k

views

answers

News: Open Targets, identifying targets for drug development in the treatment of diseases.

bioinformatics tools drug news open targets written 15 months ago by Denise - Open Targets • 4.0k

votes

answers

119

views

answers

News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)

gwas news R bioinformatics linux written 20 days ago by carlopecoraro2 • 510

votes

answers

150

views

answers

News: Systems Biology manuscript on biosearch engine design with ETC-159 data (UPDATED)

systems biology manuscript on etc-159 data news written 26 days ago by shriprakash.sinha • 40

vote

answers

141

views

answers

News: There is still time to find "hidden treasure" in the precisionFDA challenge!

news next-gen sequencing written 25 days ago by patriciareneecarter • 90

votes

answers

235

views

answers

News: Online course: Learn Bioinformatics in 100 hours

news online course biostar written 26 days ago by Istvan Albert ♦♦ 73k

votes

answers

128

views

answers

News: Course: Variant effect prediction, 31th October - 3th November 2017

news rna-seq written 29 days ago by si.vanheel-vauhkala • 0 • updated 29 days ago by WouterDeCoster ♦ 21k

votes

answers

187

views

answers

News: Spatio-temporal Transcriptome of LncRNAs in Human Brain

parkinson alzheimer news brain transcriptome lncrna written 8 weeks ago by lsp03yjh • 470

votes

answers

712

views

7 follow

answers

News: GeneSCF (Gene Enrichment Tool): Advice to users

genescf news kegg go annotation written 8 months ago by EagleEye • 4.7k

votes

answers

219

views

answers

News: T-BioInfo Platform and Bioinformatics Courses Beta Test

analysis genome tutorial chip-seq rna-seq news written 5 weeks ago by Pine Biotech • 20

votes

answer

164

views

answer

News: Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST

ucla news rna-seq strand ngs transcriptome anslysis written 9 weeks ago by strandbiz • 60

votes

answers

157

views

answers

News: Short Term Industrial Bioinformatics Training for life sciences

next-gen genome news chip-seq R rna-seq written 6 weeks ago by Seema • 0 • updated 6 weeks ago by WouterDeCoster ♦ 21k

votes

answers

225

views

answers

News: Workshop on Next Generation Sequencing Data Analysis

next-gen news alignment rna-seq written 6 weeks ago by sujana • 0 • updated 6 weeks ago by Ram ♦ 12k

votes

answers

239

views

12 follow

answers

News: Bringing the power of Big Data to biomedical researchers

ngs news biomedical research written 6 weeks ago by Paul Kutzner • 100 • updated 6 weeks ago by Michael Dondrup ♦ 43k

votes

answers

210

views

answers

News: BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG

news osg htc biomedicine bioinformatics workshop written 6 weeks ago by natasha.pavlovikj • 10

votes

answers

200

views

answers

News: Introduction to Python for biologists (Berlin). 2-6 October 2017 in Berlin (Germany).Deadlline

python ngs news blast sequencing written 7 weeks ago by carlopecoraro2 • 510

votes

answers

222

views

answers

News: Course "Assembly and Annotation of genomes"

assembly genome annotation news mapping rna-seq written 7 weeks ago by carlopecoraro2 • 510

votes

answers

160

views

answers

News: Introduction to Python for Biologists, 11-15 September 2017, Edinburgh

python news bioinformatics workshop programming written 7 weeks ago by Bert Overduin • 3.5k

votes

answers

224

views

answers

News: PDX Models: Tumor-stroma interaction

R pdx chip-seq news transcriptome written 8 weeks ago by Pine Biotech • 20

vote

answers

190

views

answers

News: The power and promise of Genome-Wide Association Studies

gwas news meta-analysis R ngs linux written 7 weeks ago by carlopecoraro2 • 510

votes

answer

209

views

answer

News: Master in integrated systems biology / Luxembourg

master course bioinformatics systems biology news written 8 weeks ago by Rainer • 120

vote

answers

142

views

answers

News: "Practical GWAS Using Linux and R" Workshop

R news next-gen linux gwas written 8 weeks ago by carlopecoraro2 • 510

votes

answers

360

views

answers

News: R Code release for Biosearch Engine Design - Updated 22-July-2017

code for search engine news written 8 weeks ago by shriprakash.sinha • 40

Recent Votes

Recent Locations • All »

United States, just now
Rockville/MD, just now
United States, just now
Munich, 1 minute ago
UK, U. Glasgow, 2 minutes ago

Recent Awards • All »

Supporter to grant.hovhannisyan • 250
Teacher to geek_y ♦ 8.0k
Teacher to shoujun.gu • 190
Scholar to shoujun.gu • 190
Scholar to Renesh • 870
Scholar to well309 • 50

Recent Replies

C: featureCounts reports zero counts when using GTF Repeatmasker track from UCSC an by Gema Sanz • 30
Thanks for your answer h.mon! In Bowtie2 I used default mode (search for multiple alignments, rep...
C: VIew reads sorted by name in IGV by nchuang • 160
I think dariober asked me the same thing and I explained it very briefly. I am just using IGV for...
A: Which package to use for RPKM/FPKM RNA-seq counts? by Renesh • 870
DESeq2 is a good package for DEG analysis in R. https://bioconductor.org/packages/release/bioc/ht...
C: Xenopus genome files for RNAseq by Ron • 600
Try checking the links I pasted above.These are xenbase links only.
C: fpkm to tpm conversion by Renesh • 870
You can still calculate TPM from RPKM/FPKM values.You need to have information about a total numb...
C: fpkm to tpm conversion by Renesh • 870
Please, read this article for basic calculation, http://bioinfogeek.over-blog.com/2017/09/gene-e...
C: fpkm to tpm conversion by Renesh • 870
http://bioinfogeek.over-blog.com/2017/09/gene-expression-units-explained-rpm-rpkm-fpkm-and-tpm.html
C: featureCounts reports zero counts when using GTF Repeatmasker track from UCSC an by h.mon ♦ 8.6k
Probably featureCounts is discarding multi-mapped reads, hence zero counts for repeats. You have ...
C: Technical replicates in RNAseq by WouterDeCoster ♦ 21k
You are very right - what my example didn't include is variability due to sampling (a Poisson dis...
C: Technical replicates in RNAseq by Macspider • 1.4k
I couldn't agree more. Basically, on the theoretical level I agree with @WouterDeCoster but on th...
A: Bosst configure error by mike • 0
I had the same problem and could not get around it until I installed the sqlite dev libraries.
C: SNPs in population; vcftools by Kevin Blighe • 930
Yes, they appear to generally have similar frequencies across each population. The only differenc...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1871 users visited in the last hour