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News: The Biostar Handbook. A bioinformatics e-book for beginners.
handbook tutorial training News
updated 10 weeks ago by 220 • written 4.8 years ago by 89k
0
votes
0
replies
61
views
News: Online Workshop - Bioinformatics Pipeline Development with Nextflow (November 22-25, 2021)
workshop pipeline NGS
2 days ago by David Langenberger 9.6k
0
votes
0
replies
61
views
News: Last call for our online training course "Data visualization with Python"
Python
7 days ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
55
views
News: Online training - Genomic Prediction
Genomics
7 days ago by carlopecoraro2 ★ 2.0k
8
votes
3
replies
275
views
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 days ago by 106k • written 23 days ago by ★ 2.2k
0
votes
0
replies
70
views
News: Population genomics using ancient DNA data
PopulationGenomics aDNA
15 days ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
99
views
News: How to interpret AlphaFold structures
EMBL-EBI structure prediction protein
29 days ago by Mensur Dlakic ★ 13k
0
votes
1
reply
196
views
News: Databricks Runtime for Genomics (Deprecated)
Runtime Databricks Genomics
updated 4 weeks ago by 106k • written 4 weeks ago by ★ 8.8k
6
votes
4
replies
311
views
News: Upcoming online training courses
Python R
5 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
112
views
News: Online training -Metabolomics in R
Metabolomics
7 weeks ago by carlopecoraro2 ★ 2.0k
1
vote
1
reply
179
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 15-17, 2021)
workshop DNAseq RNAseq
updated 8 weeks ago by ▴ 480 • written 8 weeks ago by 9.6k
0
votes
0
replies
148
views
News: Online training - Introduction to Deep Learning in biology
DeepLearning
10 weeks ago by carlopecoraro2 ★ 2.0k
1
vote
0
replies
159
views
News: NGSprint21: Hackathon in Bioinformatics
NGSchool hackathon
updated 10 weeks ago by 106k • written 10 weeks ago by ★ 2.4k
0
votes
0
replies
134
views
News: Online training - Data Visualization with Python
Data visualization
11 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
163
views
News: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
NGS bioinformatics workshop
11 weeks ago by David Langenberger 9.6k
0
votes
0
replies
153
views
News: Parallel bioinformatics using the GO programming language
golang parallel
updated 12 weeks ago by 34k • written 12 weeks ago by • 0
2
votes
0
replies
164
views
News: Unix / scripting / research computing resource
scripting parallel hpc unix programming
12 weeks ago by bacon4000 ▴ 60
4
votes
0
replies
157
views
News: New biostar-tools metaport for FreeBSD
freebsd software
11 days ago by bacon4000 ▴ 60
0
votes
0
replies
130
views
News: Webinar on BRENDA database - comprehensive enzyme information system
enzyme protein database
updated 12 weeks ago by 106k • written 12 weeks ago by ▴ 460
0
votes
0
replies
137
views
News: Online training - Phylogenomics
Phylogenomics
3 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
150
views
News: Online Training - DNA Methylation
DNAmethylation epigenetics
updated 12 weeks ago by 34k • written 3 months ago by ★ 2.0k
0
votes
0
replies
139
views
News: Event: Women in data science and bioinformatics - perspectives from industry and academia
gender women equality event data-science
updated 12 weeks ago by 34k • written 3 months ago by ▴ 460
0
votes
0
replies
145
views
News: Online Training - RADseq data analysis course
RADseq
3 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
124
views
News: Online Training -Metabarcoding of microbial communities
Metabarcoding
3 months ago by carlopecoraro2 ★ 2.0k
3
votes
0
replies
210
views
News: Linux for Biologists e-book is free for one more week
python conda virtual-machine linux galaxy
3 months ago by Vimalkumar Velayudhan (Vimal) ▴ 250
3
votes
2
replies
558
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
3 months ago by Rory Stark ★ 1.2k
0
votes
0
replies
152
views
News: New workshops from UC Davis Bioinformatics Core
workshop
3 months ago by najoshi ▴ 30
0
votes
0
replies
143
views
News: Cellosaurus release 38 is available
news cell_line knowledgebase database
3 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
174
views
News: RNA sequencing data with R/Bioconductor
R Bioconductor RNAseq
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
128
views
News: Bayesian course using bmrs in R
statistics R Bayesian bmrs
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
137
views
News: Comprehensive benchmarking of software for mapping whole genome bisulfite data
Methylation NGS Epigenetics Bisulfite
4 months ago by David Langenberger 9.6k
0
votes
1
reply
473
views
News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
News Workshop RNA-Seq DNA-Seq NGS
4 months ago by David Langenberger 9.6k
1
vote
2
replies
292
views
News: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake Pipeline
updated 12 weeks ago by 34k • written 4 months ago by ★ 2.0k
5
votes
0
replies
407
views
News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia news
4 months ago by l_antonova ▴ 50
0
votes
0
replies
149
views
News: Learn to Analyze and Visualize Microbiome Data with Nephele & MicrobiomeDB
microbiome
updated 4 months ago by ★ 11k • written 4 months ago by ▴ 60
0
votes
0
replies
147
views
News: Online Training -low-coverage Whole Genome Sequencing
Genome SNPs NGS WholeGenomeSequencing
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
126
views
News: Online Training -Generalised Linear Models in R
GLMs statistics GeneralisedLinearModels R
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
166
views
News: Call for abstracts BioSB 2021!
biosb conference dutch
updated 12 weeks ago by 34k • written 4 months ago by ▴ 180
5
votes
3
replies
633
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 4 months ago by 89k • written 4 months ago by ▴ 30
0
votes
0
replies
177
views
News: Online Training - Microbial Metabarcoding - 4-8 October
MicrobialEcology metabarcoding
updated 12 weeks ago by 34k • written 5 months ago by ★ 2.0k
1
vote
2
replies
451
views
News: Bioinformatics Solutions on AWS
Cloud AWS
updated 12 weeks ago by 34k • written 5 months ago by ▴ 10
0
votes
0
replies
188
views
News: Online Training - Conservation Genomics
Genome Genomics ConservationGenomics SNPs
3 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
496
views
News: Bioinformatics Open Source Conference 2021
OBF BOSC Conference
5 months ago by Chris Fields ★ 2.2k
0
votes
0
replies
247
views
News: Online training: Data Visualization with Python
Python DataVisualization
5 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
298
views
News: Online training - Network Analysis in R
R NetworkAnalysis
5 months ago by carlopecoraro2 ★ 2.0k
1
vote
0
replies
1.0k
views
News: Webinar - Recent and upcoming enhancements in web BLAST and Primer-BLAST! (Wed, April 7, 2021 12:00 PM - 12:45 PM EDT)
primer-BLAST blast
5 months ago by GenoMax 106k
1
vote
0
replies
209
views
News: SBGNview: Data Analysis, Integration and Visualization of All Pathways
SMPDB PANTHER Reactome SBGNview Pathview
5 months ago by bigmawen ▴ 400
0
votes
0
replies
229
views
News: 3-day ONLINE TRAINING - NEXTFLOW
pipeline programming workflow cloud clustering
updated 5 months ago by 106k • written 5 months ago by ★ 2.0k
0
votes
0
replies
278
views
News: BioSoftics- An Innovative way to explore Science and Technology
genome Biotechnology
updated 12 weeks ago by 34k • written 5 months ago by ▴ 10
0
votes
0
replies
400
views
News: :: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (April 28 - 30, 2021)
NGS DNA-Seq Workshop Mapping RNA-Seq
5 months ago by David Langenberger 9.6k
1,000 results • Page 1 of 20
Recent Votes
Comment: How to remove Illumina TruSeq Index adapters reverse (R2 reads )
How can I draw this plot?
Interpreting output of BCFtools RoH
Answer: Is there any software that can use ATAC-seq to identify super enhancer
A: Alignment and mapping
Comment: Flat Volcano plot
Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician
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Recent Replies
Answer: Genozip: A new compression tool for FASTQ, BAM, VCF and more by matthew.pobox • 0
This seems like a great tool which has been seriously overlooked. I've been testing it out and was able to reproduce the compression ra…
Comment: get read length from sra by Renesh ★ 2.0k
The suggested methods works. Here is another method using the [SRA toolkit][1] fastq-dump -X 1 -Z SRR5790106 | sed -n '2p' | awk '{ pr…
Comment: Primers trimming from Illumina paired-end reads by BBDuk software by GenoMax 106k
Following should work. Give it a try and let me know. bbduk.sh -Xmx2g in1=test_R1.fq in2=test_R2.fq out1=R1_trim.fq out2=R2_trim.fq li…
Answer: Database for Enhancers with Coordinates by Papyrus ★ 1.3k
Also check [EnhancerAtlas][1], apart from coordinates it provides predictions for enhancer-gene target interactions, which may be useful. …
Comment: How can I draw this plot? by gubrins ▴ 90
Heys, did you manage to plot it?
Comment: get read length from sra by GenoMax 106k
You will only get average length of reads (which may or may not be very useful) using [Entrezdirect][1]. $ esearch -db sra -query "SRR…
Comment: Interpreting output of BCFtools RoH by gubrins ▴ 90
Heys, did you manage in interpreting and visualizing the output? I'm in the same situation...
Comment: which tool can I use to detect CNVs? by brunobsouzaa ▴ 560
`cnvkit` and `ExomeDepth` are great tools for that. Also, both are pretty straightforward to use.
Comment: rsem-calculate-expression with STAR takes forever but without error by Fleur • 0
Thanks both! I will try :) :)
Comment: rsem-calculate-expression with STAR takes forever but without error by Fleur • 0
Ah yes, sounds similar to tmux which is what I'm using. That also makes sure that the job keeps running when you close the terminal. Thanks…
Comment: which tool can I use to detect CNVs? by patelk26 ▴ 250
You could try CNVkit. You can create a reference copy number profile without normal samples.
Answer: Is there any software that can use ATAC-seq to identify super enhancer by jared.andrews07 ★ 11k
The original paper actually used a collection of TFs + Mediator. ROSE was not designed for H3K27ac use, though both the authors and others …
Comment: get read length from sra by ATpoint 53k
https://www.biostars.org/p/115936/#115962
Comment: script to organize files by Galileo • 0
I found a solution: used dos2unix on the files that have '$'\r' at the end :)
Comment: How to remove Illumina TruSeq Index adapters reverse (R2 reads ) by Info.shi ▴ 10
Thank you so much for quick response if I understand you well is it I need to specify maximum base pair of adapter to trim. And I was wou…
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