Limit : all time
all time today this week this month this year
1,000 results • Page 1 of 20
Sort: Rank
Rank Views Votes Replies
729
votes
161
replies
108k
views
100 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 9 days ago by 1.6k • written 6.3 years ago by 97k
0
votes
0
replies
83
views
News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
13 hours ago by Stephen • 0
0
votes
0
replies
74
views
News: Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine declmed declarative icfp precision
14 hours ago by Stephen • 0
0
votes
0
replies
90
views
News: Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian RProject course online
1 day ago by Sole • 0
0
votes
0
replies
97
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
updated 11 hours ago by 38k • written 2 days ago by ★ 2.3k
0
votes
2
replies
294
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 6 days ago by 38k • written 6 days ago by ★ 2.3k
10
votes
4
replies
577
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 7 days ago by ▴ 30 • written 6 weeks ago by 9.9k
1
vote
0
replies
143
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 7 days ago by 38k • written 7 days ago by ★ 2.3k
1
vote
1
reply
238
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
9 days ago by jared.andrews07 ★ 14k
1
vote
0
replies
157
views
News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 7 days ago by 38k • written 10 days ago by ★ 2.3k
0
votes
0
replies
113
views
News: Environmental Metagenomics course
Environmental-Metagenomics
updated 15 days ago by 38k • written 15 days ago by ★ 2.3k
0
votes
0
replies
134
views
News: Course - GENERALIZED LINEAR MODELS in R
GLMs R GeneralisedLinearModels
16 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
185
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
20 days ago by mia.nahom ▴ 10
1
vote
0
replies
192
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
21 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
120
views
News: Course - INTRODUCTION TO THE ANALYSIS OF LONGITUDINAL DATA WITH R
Genomics LongitudinalData R
23 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
195
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 24 days ago by 38k • written 24 days ago by ▴ 750
0
votes
0
replies
194
views
News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
27 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
155
views
News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 16 days ago by 38k • written 29 days ago by ★ 2.3k
0
votes
0
replies
272
views
News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 4 weeks ago by 38k • written 4 weeks ago by ★ 2.3k
5
votes
3
replies
372
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 4 days ago by ▴ 230 • written 4 weeks ago by 3.4k
0
votes
1
reply
145
views
News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 5 weeks ago by 38k • written 5 weeks ago by ★ 2.3k
0
votes
0
replies
162
views
News: course - Next steps in applied Bayesian regression modeling
Statistics RegressionModeling Bayesian R
5 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
203
views
News: Introduction to GWAS course in June
GWAS R
updated 16 days ago by 38k • written 5 weeks ago by ★ 2.3k
0
votes
0
replies
206
views
News: Introduction to GWAS course (6th edition) - June, 5th-8th
GWAS R
updated 6 weeks ago by 38k • written 6 weeks ago by ★ 2.3k
0
votes
0
replies
138
views
News: Course - Version Control for Researchers
VersionControl GIT Github
6 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
270
views
News: Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Programming Python
updated 6 weeks ago by 38k • written 6 weeks ago by ★ 2.3k
0
votes
0
replies
175
views
News: Eukaryotic Metabarcoding course
eDNA Metabarcoding
updated 7 weeks ago by 38k • written 7 weeks ago by ★ 2.3k
0
votes
3
replies
336
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
6 weeks ago by PeterC_NCBI ▴ 200
0
votes
0
replies
163
views
News: Course - Mass Spectrometry and Proteomics in R/Bioconductor
Bioconductor MassSpectrometry R Proteomics
7 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
311
views
News: Course - Machine Learning in R (for omics data)
Genomics omics MachineLearning R
7 weeks ago by carlopecoraro2 ★ 2.3k
2
votes
0
replies
207
views
News: Course - Reproducibility in Bioinformatics
Reproducibility
updated 7 weeks ago by 38k • written 7 weeks ago by ★ 2.3k
0
votes
0
replies
158
views
News: course - Multivariate data analysis with R and vegan
Statistics MultivariateAnalysis R vegan
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
2
replies
662
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
8 weeks ago by David Langenberger 9.9k
0
votes
0
replies
232
views
News: Bioinformatics courses in February
Genomics BioinformaticsTraining
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
529
views
News: Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI SRA GenBank
8 weeks ago by PeterC_NCBI ▴ 200
1
vote
2
replies
366
views
News: Course: Network Analysis in R
NetworkAnalyis R
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
220
views
News: de novo RNA-seq Analysis Workshop
virtual workshop rna transcriptome
9 weeks ago by mia.nahom ▴ 10
0
votes
0
replies
257
views
News: Genomic Prediction course
Selective-Breeding Genomic-Prediction
updated 7 weeks ago by 38k • written 9 weeks ago by ★ 2.3k
1
vote
0
replies
335
views
News: course: Meta-analysis in R
Statistics MetaAnalysis R
9 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
302
views
News: GSEA in R/Bioconductor course
Bioconductor R GSEA GeneSetEnrichmentAnalysis
9 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
546
views
News: For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI GenBank
9 weeks ago by PeterC_NCBI ▴ 200
0
votes
0
replies
248
views
News: Metabarcoding in Microbial Ecology
Metabarcoding Qiime2 16S MicrobialEcology R
9 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
240
views
News: Metagenomics tools recommeder system
NGS Metagenomics Recommender-system
updated 9 weeks ago by 38k • written 10 weeks ago by • 0
0
votes
0
replies
330
views
News: Hands-On NGS Data Analysis Workshops 2023
NGS Workshop RNA-Seq DNA-Seq
10 weeks ago by David Langenberger 9.9k
1
vote
5
replies
665
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 7 weeks ago by 38k • written 10 weeks ago by ★ 2.3k
0
votes
0
replies
230
views
News: Course on Generalised Additive Models In R
Statistics GAMs R
10 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
400
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 7 weeks ago by 38k • written 10 weeks ago by ★ 2.3k
1
vote
2
replies
550
views
News: New chat server (Discord) for bioinformatics
community
10 weeks ago by Samuel Lampa ★ 1.3k
0
votes
0
replies
283
views
News: Online course - Genome Assembly and Annotation
Long-reads Genome-Annotation Biodiversity Genome-Assembly
updated 7 weeks ago by 38k • written 10 weeks ago by ★ 2.3k
1
vote
3
replies
485
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
11 weeks ago by PeterC_NCBI ▴ 200
1,000 results • Page 1 of 20
Recent Votes
Answer: Informations for gene summary are missing in eutils api of NCBI?
A: where to download ERCC RNA spike ins fasta and gff file?
A: The RNA-Seq data input for WGCNA in terms of gene co-expression network construc
The RNA-Seq data input for WGCNA in terms of gene co-expression network construction
Answer: Informations for gene summary are missing in eutils api of NCBI?
Comment: PCA in gene expression
Installing an updated R version (>=4.0) using conda
Recent Locations • All
Iran, just now
Austria, 1 minute ago
Italy, 3 minutes ago
Germany, 4 minutes ago
EMBL-EBI, 4 minutes ago
Spain, 4 minutes ago
India, 6 minutes ago
Recent Awards • All
Popular Question to genomes_and_MGEs ▴ 10
Popular Question to txema.heredia ▴ 70
Popular Question to anu014 ▴ 190
Popular Question to Dude • 0
Teacher to Charles Warden 8.2k
Commentator to colindaven 4.6k
Guru to jv ★ 1.0k
Recent Replies
Answer: GetBM - GERP conservation score for GRCm39 by Ben_Ensembl ★ 2.2k
Hi Kyle, The GERP scores are not available through BioMart (nor the Ensembl REST API). The most efficient method for retrieving these scor…
Comment: how to get to a VCF from bam files by Human • 0
Ok, but in general this approach would work? And why would I not want to use all the bam and Bam.bai files? Why would I subset it?
Comment: in an RNA-seq experiment, what threshold would you use to define a set of expres by ATpoint 70k
This has been asked many times before. Please google for 'fpkm cutoff biostars', 'expressed cutoff biostars' or similar queries. With some …
Answer: GetBM - GERP conservation score for GRCm39 by Mike Smith ★ 2.0k
You can try using `searchAttributes()` which at least means you don't have to look at every possible attribute hoping to find the one you n…
Answer: Calculation method of RMSMappingQuality by zhoujun.nmu • 0
Hello, Have you solved this probelm?
Comment: PCA in gene expression by ali • 0
Thanks for your help Dear i.sudbery I have been working on a project related to the correlation between genetic mutations and drug resis…
Answer: Using STAR for RNA seq-alignment. by LChart 2.2k
`genom_dir= ${pKS}/"star_index"` should read `genom_dir="${pKS}/star_index"` (n.b., no space after the =); inputFile and finput also need t…
Comment: RepeatMasker species error by jianzhi0515 • 0
check out this biostars question: it solved this issue of my repeat marker: https://www.biostars.org/p/488836/
Comment: No Passing Variants GATK by brandnewatthis • 0
I ended up realizing it was a problem with bcftools - I didn't put my bgzip my vcf files therefore it couldn't read it. It looks to be fixe…
Comment: ExomeDepth installation error by jared.andrews07 ★ 14k
Again, no idea, I haven't used this tool. You will at minimum need a reference to compare your single bam file to, so I expect you'd need a…
Comment: No Passing Variants GATK by Pierre Lindenbaum 153k
> , or if the GATK error "unidentified variable MQRankSum" is causing this try again without MQRankSum ...
Comment: PCA in gene expression by i.sudbery 16k
The noise on your differential expression is exactly the point. If samples are noise, then genes should be called differential.
Answer: Make a S4/S3 object with my clinical data by ATpoint 70k
Use a SummarizedExperiment. It's assay-agnostic so you can give any assay eith features/genes/observations as rows and samples at columns. …
Comment: TSS of protein coding genes by ConvolutedGenome ▴ 10
I seeee Thank you for your input :) !!
Comment: how to get to a VCF from bam files by Ram 38k
Read my script - change your bcftools to output VCF, not BCF. File size (as long as it's >0) is not an indicator of anything significant. …
Traffic: 2093 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6