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News: The Biostar Handbook. A bioinformatics e-book for beginners.
handbook tutorial training News
updated 19 days ago by 10 • written 4.4 years ago by 88k
0
votes
0
replies
49
views
News: Bayesian course using bmrs in R
statistics R Bayesian bmrs
3 days ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
34
views
News: Comprehensive benchmarking of software for mapping whole genome bisulfite data
Methylation NGS Epigenetics Bisulfite
3 days ago by David Langenberger 9.6k
0
votes
1
reply
241
views
News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
News Workshop RNA-Seq DNA-Seq NGS
5 days ago by David Langenberger 9.6k
1
vote
2
replies
107
views
News: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake Pipeline Bioinformatics
12 days ago by carlopecoraro2 ★ 2.0k
2
votes
0
replies
83
views
News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia news
16 days ago by l_antonova ▴ 20
0
votes
0
replies
56
views
News: Learn to Analyze and Visualize Microbiome Data with Nephele & MicrobiomeDB
microbiome
updated 18 days ago by 9.6k • written 18 days ago by ▴ 60
0
votes
0
replies
52
views
News: Online Training -low-coverage Whole Genome Sequencing
Genome SNPs NGS WholeGenomeSequencing
19 days ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
49
views
News: Online Training -Generalised Linear Models in R
GLMs statistics GeneralisedLinearModels R
19 days ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
71
views
News: Call for abstracts BioSB 2021!
conference dutch biosb bioinformatics
19 days ago by Sergio Martínez Cuesta ▴ 170
5
votes
3
replies
360
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 22 days ago by 88k • written 25 days ago by ▴ 30
0
votes
0
replies
80
views
News: Online Training - Microbial Metabarcoding - 4-8 October
bioinformatics MicrobialEcology metabarcoding
25 days ago by carlopecoraro2 ★ 2.0k
2
votes
2
replies
312
views
News: Bioinformatics Solutions on AWS
AWS Bioinformatics Cloud
27 days ago by Jillian ▴ 20
0
votes
0
replies
95
views
News: Online Training - Conservation Genomics
ConservationGenomics SNPs Genome Genomics
4 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
284
views
News: Bioinformatics Open Source Conference 2021
OBF BOSC Conference
5 weeks ago by Chris Fields ★ 2.2k
0
votes
0
replies
146
views
News: Online training: Data Visualization with Python
Python DataVisualization
5 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
218
views
News: Online training - Network Analysis in R
R NetworkAnalysis
5 weeks ago by carlopecoraro2 ★ 2.0k
1
vote
0
replies
745
views
News: Webinar - Recent and upcoming enhancements in web BLAST and Primer-BLAST! (Wed, April 7, 2021 12:00 PM - 12:45 PM EDT)
primer-BLAST blast
6 weeks ago by GenoMax 101k
1
vote
0
replies
123
views
News: SBGNview: Data Analysis, Integration and Visualization of All Pathways
SMPDB PANTHER Reactome SBGNview Pathview
6 weeks ago by bigmawen ▴ 400
0
votes
0
replies
149
views
News: 3-day ONLINE TRAINING - NEXTFLOW
pipeline programming workflow cloud clustering
updated 6 weeks ago by 101k • written 6 weeks ago by ★ 2.0k
0
votes
0
replies
191
views
News: BioSoftics- An Innovative way to explore Science and Technology
Bioinformatics genome Biotechnology
6 weeks ago by Asad Bilal ▴ 10
0
votes
0
replies
235
views
News: :: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (April 28 - 30, 2021)
NGS DNA-Seq Workshop Mapping RNA-Seq
6 weeks ago by David Langenberger 9.6k
0
votes
0
replies
150
views
News: Introduction to Deep Learning
Python DeepLearning MachineLearning News
8 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
141
views
News: Learn how to do modern reproducible data science
Snakemake Nextflow Workflows Bionformatics News
9 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
125
views
News: Noncoding RNA conference (including bioinformatics)
conference bioinformatics RNA noncoding RNA News
9 weeks ago by rory.johnson ▴ 20
0
votes
0
replies
126
views
News: Spring Bioinformatics Courses @ Edinburgh Genomics
RNA-Seq SNP metagenomics training News
9 weeks ago by Edinburgh Genomics Training ▴ 40
0
votes
1
reply
326
views
News: Results are now Available for the precisionFDA Truth Challenge V2
genome News
updated 9 weeks ago by ▴ 100 • written 9 months ago by ▴ 150
1
vote
0
replies
144
views
News: Online Training - Analysis of Transposable elements
sequence assembly genome News
10 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
145
views
News: Three x 2day online Python courses
Python News
10 weeks ago by oliverhooker ▴ 60
0
votes
0
replies
147
views
News: Nine x 2day online R courses
R News
10 weeks ago by oliverhooker ▴ 60
2
votes
0
replies
138
views
News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl training REST API workshop genome browser News
updated 10 weeks ago by 101k • written 10 weeks ago by ▴ 160
5
votes
1
reply
475
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey News
11 weeks ago by Jeremy Leipzig 20k
0
votes
1
reply
135
views
News: The NCBI Datasets command-line tool now provides ortholog data
ncbi gene refseq json News
11 weeks ago by e.cox ▴ 30
0
votes
0
replies
166
views
News: 3-day ONLINE TRAINING - NEXTFLOW
Nextflow workflow Bioinformatics News
3 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
156
views
News: ONLINE training - Single-cell RNA-seq analysis with R/Bioconductor. 07-11 June
R RNA-Seq SingleCell Bioconductor News
3 months ago by carlopecoraro2 ★ 2.0k
3
votes
0
replies
222
views
News: Online training - Unix and shell scripting for bioinformatics
Unix Bioinformatics scripting Linux News
3 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
175
views
News: Cellosaurus release 37 is available
knowledgebase databases news cell line News
3 months ago by Amos Bairoch ▴ 110
1
vote
1
reply
186
views
News: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
assembly genome Nanopore News
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
262
views
News: DNA Methylation Data Analysis Workshop (April 12-15, 2021 in Berlin)
Epgenetics Bisulfite Methylation News
4 months ago by David Langenberger 9.6k
1
vote
0
replies
192
views
News: Online training: Advanced Programming in R
R Programming News
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
173
views
News: Tutorial on Detecting Structural Variants in ONT data
structural_variants ONT Tutorial News
updated 4 months ago by 49k • written 4 months ago by • 0
0
votes
0
replies
417
views
News: Online Workshop: Bioinformatics Pipeline Development with Nextflow (May 3-6, 2021)
Nextflow NGS pipeline bioinformatics News
4 months ago by David Langenberger 9.6k
0
votes
0
replies
242
views
News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS - Last days to apply
next-gen SNP genome News
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
1
reply
441
views
News: :: LAST CALL :: Online Course - A Practical Introduction to NGS Data Analysis (March 1 - 3, 2021)
RNA-Seq DNA-Seq Workshop News
4 months ago by David Langenberger 9.6k
3
votes
0
replies
259
views
News: ONLINE TRAINING: Environmental Metagenomics
assembly metagenomics nanopore illumina News
4 months ago by carlopecoraro2 ★ 2.0k
2
votes
0
replies
211
views
News: ONLINE TRAINING - Web Applications Development with R Shiny
R Shiny News
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
212
views
News: Online Training - An introduction to Nanopore direct RNA Sequencing - last 2 places left
RNA-Seq rna-seq Nanopore News
4 months ago by carlopecoraro2 ★ 2.0k
2
votes
0
replies
243
views
News: Online training - Computational Bayesian methods using brms in R
R Bayesian Statistics News
5 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
222
views
News: ONLINE training - Eukaryotic Metabarcoding
Metabarcoding eDNA News
5 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
244
views
News: New columns added to the web BLAST Descriptions Table including taxonomic info and sequence length
blast ncbi News
5 months ago by GenoMax 101k
1,000 results • Page 1 of 20
Recent Votes
Comment: Snakemake and STARsolo
Comment: Snakemake and STARsolo
Answer: Bedtools intersect 0- and 1-based coordinate files
Answer: Bedtools intersect 0- and 1-based coordinate files
A: Gene Set Analysis Software That Takes A Vcf As Input
C: deseq2 replicates error
Using VEP to get gnomAD frequencies
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Scholar to ATpoint 49k
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Recent Replies
Comment: Snakemake and STARsolo by Ram 33k
Follow Jeremy's advice. Your Snakefile is badly formed and the line outside the rule breaks everything.
Comment: What is a difference between uniprot and 'nr. Non-redundant GenBank...'? by Dunois ▴ 780
I'd add to @genomax 's point that if you're going to run a search against `NR` on a local machine, it's probably unwise at this point to us…
Comment: Bedtools intersect 0- and 1-based coordinate files by maxrwjones898 ▴ 10
Ah wonderful, good to know! Brilliant answer and thanks for the code / outputs to back it up.
Comment: What is a difference between uniprot and 'nr. Non-redundant GenBank...'? by GenoMax 101k
> clients proprietary sequences which cannot by processed on public > website. No option but to download `nr` indexes and do the search lo…
Comment: What is a difference between uniprot and 'nr. Non-redundant GenBank...'? by matt ▴ 10
I would like to be able to do ‘blastp’ with clients proprietary sequences which cannot by processed on public website. Until now I did it …
Answer: Bedtools intersect 0- and 1-based coordinate files by ATpoint 49k
> Does bedtools intersect automatically take this difference into account? Yes, it is quite a smart one. Example (BED vs GTF, random file…
Comment: Issue on downloading fastPHASE in Mac by 4galaxy77 ▴ 510
Out of polite curiosity, what use to people have for fastPHASE in 2021? I believe it's still the most accurate method, but pretty slow. So …
Comment: Snakemake and STARsolo by Jeremy Leipzig 20k
one of them is `{sample}.Aligned.out.sam`. Start by creating a target variable that point to the sam files you want produced SAMPLES =…
Comment: T-test analysis for gene expression comparison by bioinformatics2020 ▴ 580
THIS! You need to go back and learn about what type of distribution is used for a t-test. Then start understanding the distributions that g…
Comment: Warning messages: In svgStyleAttributes(style, svgdev) : Removing non-S by xxxxxxxx ▴ 20
arrayQualityMetrics version- 3.47.0
Comment: Liftover vcf file from hs37d5 assembly to b37 assembly by Pierre Lindenbaum 135k
don't you just have to rename the chromosomes (if needed) and discard the chromosomes that are not present in the other reference ?
Answer: How to extract translated sequence of pol gene from a GenBank file by GenoMax 101k
This is a duplicate post of a question already asked here --> https://www.biostars.org/p/9470184 Please use the other post. This post will…
Answer: How to extract translated sequence of a partcular gene by parsing GenBank file by GenoMax 101k
Here is one solution based on [EntrezDirect][1]: $ esearch -db protein -query "Human immunodeficiency virus 1 AND pol [gene]" | efetch…
Comment: Haploview formats by abdin-marwa • 0
This seems pretty helpful. Thank you so much.
Comment: Warning messages: In svgStyleAttributes(style, svgdev) : Removing non-S by 4galaxy77 ▴ 510
what version of arrayQualityMetrics are you using?
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