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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training tutorial News handbook
updated 10 weeks ago by 830 • written 5.6 years ago by 93k
0
votes
2
replies
216
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indelcalling bioinformatics
2 days ago by sarah_p ▴ 10
0
votes
2
replies
308
views
News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
Workshop NGS Transcriptomics RNA-Seq
2 days ago by David Langenberger 9.7k
0
votes
0
replies
86
views
News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility Bioinformatics
1 day ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
127
views
News: Online statistics courses
R statistics
17 days ago by carlopecoraro2 ★ 2.1k
0
votes
1
reply
156
views
News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 18 days ago by 117k • written 18 days ago by • 0
2
votes
0
replies
131
views
News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
21 days ago by Elisabeth Gasteiger ★ 2.0k
3
votes
0
replies
160
views
News: Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics binning
updated 25 days ago by 117k • written 25 days ago by ▴ 60
0
votes
0
replies
92
views
News: Nanopore direct RNA Sequencing - online course
Sequencing direct Nanopore RNA
4 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
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101
views
News: ONLINE COURSE - LINEAR MIXED MODELS IN R - September 26th-30th
Models Mixed R
4 weeks ago by carlopecoraro2 ★ 2.1k
7
votes
1
reply
265
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
4 weeks ago by kzkedzierska ▴ 290
0
votes
0
replies
119
views
News: ONLINE course "Population genomic inference from low-coverage whole-genome sequencing data"
lcWGS Genomics Population
5 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
128
views
News: Online course - Metabarcoding in microbial Ecology
Ecology Metabarcoding Qiime2 Bioinformatics Microbial
6 weeks ago by carlopecoraro2 ★ 2.1k
3
votes
1
reply
186
views
News: Free web seminars related to small non-coding RNA bioinformatics
eu microRNA coding non club bioinformatics RNA small
6 weeks ago by laurent.guyon ▴ 60
0
votes
0
replies
116
views
News: ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics Population RADseq Genomics Stacks
5 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
115
views
News: Online course - Developing R/Bioconductor packages for genomics
develptment Bioconductor R Bioinformatics packages
7 weeks ago by carlopecoraro2 ★ 2.1k
1
vote
0
replies
220
views
News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
indelcalling oncopanel bioinformatics
7 weeks ago by sarah_p ▴ 10
0
votes
2
replies
289
views
News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
7 weeks ago by PeterC_NCBI ▴ 20
0
votes
0
replies
73
views
News: NCBI poster at Bio-IT World on the new cloud BLAST tool, ElasticBLAST
NCBI BLAST ElasticBLAST
8 weeks ago by PeterC_NCBI ▴ 20
1
vote
0
replies
135
views
News: DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse data R analysis
8 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
196
views
News: Introduction to Nextflow course
Nextflow
8 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
130
views
News: Online Course - A Practical Introduction to NGS Data Analysis (May 16-18, 2022)
NGS RNA DNA Workshop
8 weeks ago by David Langenberger 9.7k
6
votes
0
replies
169
views
News: NGSchool2022: Machine Learning in Computational Biology
summer machine learning school ngschool ML statistics
9 weeks ago by kzkedzierska ▴ 290
0
votes
1
reply
175
views
News: Introduction to Deep Learning course
DeepLearning MachineLearning bigdata
updated 9 weeks ago by 20k • written 9 weeks ago by ★ 2.1k
2
votes
3
replies
471
views
News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
9 weeks ago by David Langenberger 9.7k
0
votes
0
replies
305
views
News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
indelcalling bioinformatics oncopanel
9 weeks ago by sarah_p ▴ 10
0
votes
0
replies
124
views
News: Virtual Genome Assembly Workshop : May 16-19, 2022
assembly Genome Workshop
10 weeks ago by singh.vijender ▴ 50
1
vote
0
replies
130
views
News: Data visualization in Python course
Data Visualization Python
10 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
114
views
News: Landscape Genomics in R course
LandscapeGenomics
10 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
126
views
News: Gene Set Enrichment Analysis in R workshop
GSE
10 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
117
views
News: Conservation Genomics Workshop
ConservationGenomics
10 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
128
views
News: A webinar about Harmony batch correction, by its author
scrna-seq single-cell rna-seq
11 weeks ago by Jennifer Pham ▴ 450
0
votes
1
reply
2.0k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
Nature NGS Sequencing Bioinformatics
updated 12 weeks ago by 13k • written 12 weeks ago by ▴ 160
0
votes
1
reply
594
views
News: ::FINAL CALL:: Online Course | A Practical Introduction to NGS Data Analysis | March 30 - April 1, 2022
DNA-Seq RNA-Seq Workshop
3 months ago by David Langenberger 9.7k
1
vote
0
replies
147
views
News: Reproducibility in Bioinformatics Workshop
Reproducibility Bioinformatics
3 months ago by carlopecoraro2 ★ 2.1k
0
votes
1
reply
228
views
News: 6th Berlin Summer School in NGS Data Analysis (June 13-17, 2022)
RNAseq DNAseq transcriptomics
3 months ago by David Langenberger 9.7k
0
votes
0
replies
123
views
News: Cellosaurus release 41 is available
biocuration knowledgebase cell news line databases
3 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
122
views
News: RNAseq workshop (Model Species) : April4-7, 2022
RNAseq Model species Workshop
3 months ago by singh.vijender ▴ 50
1
vote
0
replies
208
views
News: :: LAST CALL :: Bioinformatics Pipeline Development with Nextflow (April 4-7, 2022)
Nextflow Bioinformatics NGS Pipeline Development
3 months ago by David Langenberger 9.7k
0
votes
0
replies
167
views
News: 4th edition of the GWAS course
GWAS
3 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
163
views
News: Course - An introduction to Nanopore direct RNA Sequencing
NanoporeDirectRNAseq
4 months ago by carlopecoraro2 ★ 2.1k
2
votes
0
replies
302
views
News: Nextflow Slack Channel
nextflow slack
4 months ago by ATpoint 62k
0
votes
0
replies
185
views
News: Reproducible Analysis With R course
Reproducibility
4 months ago by carlopecoraro2 ★ 2.1k
7
votes
1
reply
619
views
News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 4 months ago by ★ 19k • written 5 months ago by 117k
0
votes
0
replies
179
views
News: Reproducible data science with R course
R
4 months ago by carlopecoraro2 ★ 2.1k
0
votes
1
reply
501
views
News: ::LAST CALL:: RNA-Seq Data Analysis Workshop, February 28 - March 3, 2022 in Berlin
RNAseq Transcriptomics RNA
4 months ago by David Langenberger 9.7k
0
votes
0
replies
181
views
News: Machine Learning in R - course
MachineLearning
4 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
142
views
News: Paleobiology in R: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY - course
Paleobiology
4 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
185
views
News: Meta-analysis in R course
Meta-analysis
4 months ago by carlopecoraro2 ★ 2.1k
2
votes
2
replies
339
views
News: ISO usability testers for NCBI comparative genome viewer
comparative eukaryotic alignment pangenome
4 months ago by SanjidaR_NCBI ▴ 20
1,000 results • Page 1 of 20
Recent Votes
Answer: pymol for superimpose by python script
Comment: aligner for CORRECTED pacbio long reads
How To Do Alignment, Stop Codon Removal And Dn/Ds Calulation In One Go?
How To Do Alignment, Stop Codon Removal And Dn/Ds Calulation In One Go?
A: How To Do Alignment, Stop Codon Removal And Dn/Ds Calulation In One Go?
Comment: How To Do Alignment, Stop Codon Removal And Dn/Ds Calulation In One Go?
Comment: How To Do Alignment, Stop Codon Removal And Dn/Ds Calulation In One Go?
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Scholar to rpolicastro 8.8k
Scholar to GenoMax 117k
Popular Question to bioinformatics.queries ▴ 50
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Recent Replies
Comment: pymol for superimpose by python script by iamsmor • 0
Thank you so much, you really wonderful person, spend your time for long detailed explaination.
Answer: Problem using FastML for ancestral sequence reconstruction by Mensur Dlakic ★ 19k
It does not seem that you understand the meaning of this error message: > sh: 1: cannot create outdir/fastml.std: Directory nonexistent …
Comment: aligner for CORRECTED pacbio long reads by gconcepcion ▴ 280
This is a very old and outdated link, what is it exactly that you are trying to do? Align PacBio HiFi reads to a reference? Try minimap…
Comment: How To Do Alignment, Stop Codon Removal And Dn/Ds Calulation In One Go? by sunnykevin97 ▴ 760
You have to use the nucleotide (CDS) alignment file as input.
Comment: What Is Ad (Allelic Depth) In 1000Genomes Vcf? by Maryam • 0
Hello, This post is so helpful. My question is according to quality scoring of variants, the good AD threshold should be >8. Then how…
Comment: Incomplete alignment EMBOSS needleall by lieven.sterck 14k
not sure if it takes fastq as input (though yes, there example on their site is named .fastq , but when you look at that file it is a fasta…
Comment: Extract sequence from Fasta using header by GenoMax 117k
@princy: You have asked many questions on biostars over the last few months but appear not to have validated any of them. Accepting answers…
Answer: Extract sequence from Fasta using header by lieven.sterck 14k
`seqkit` will be able to do this. (subprogram `seq` ) (alternative, if you have a blastdb of that fasta file, you can also get them by u…
Answer: Extract sequence from Fasta using header by GenoMax 117k
See: https://www.biostars.org/p/434016/#434038
Comment: Best pipeline for RNAseq assembly and analysis (or help with stringtie assembly) by Katherine • 0
I thought that the file I used was the most up to date. Here is the header of the file: gff-version 3 !gff-spec-version 1.21 !processor…
Comment: analyzing a single cell and searching for a specific gene using single cell data by rpolicastro 8.8k
They provide an h5ad file, which may contain the already processed data, plus associated cell and feature metadata. If so, you should load …
Answer: Extract header from fasta file by cpad0112 20k
$ awk -F "_|:" -v OFS="_" '/^>/{print ">"$2,$3,$4,$5,$6};!/>/' test.fa >TRINITY_DN74698_c0_g1_i1 MRIRSVVFTLRPRAKWMAPSSGMRL…
Answer: analyzing a single cell and searching for a specific gene using single cell data by jared.andrews07 ★ 13k
I'd recommend you read what goes into a single cell analysis. The [Orchestrating Single Cell Analysis](http://bioconductor.org/books/releas…
Answer: Extract header from fasta file by rpolicastro 8.8k
A [seqkit](https://bioinf.shenwei.me/seqkit/) answer. You may need to tweak the regex depending on the variability in the naming scheme. `…
Comment: Incomplete alignment EMBOSS needleall by bioinformatics.queries ▴ 50
It does take fastq file as an input. The advantage of this tool is that it allows alignment of the fastq sequences with the fasta sequences…
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