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News: The Biostar Handbook. A bioinformatics e-book for beginners.

tutorial news training handbook written 3.2 years ago by Istvan Albert ♦♦ 82k

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Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]

chat news forum written 23 months ago by Devon Ryan ♦ 94k • updated 21 hours ago by Kevin Blighe ♦ 54k

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News: Ensembl reduced functionality: 16th-25th March 2020

ftp news service ensembl vep blat written 22 hours ago by Ben_Ensembl • 1.1k

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News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020

genefusion news webinar detection rna-seq written 2 days ago by Strand NGS • 20

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News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH

news next-gen biomedical genomics rna-seq written 2 days ago by AABI • 120

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News: Georgetown ICBI and precisionFDA Brain Cancer Challenge Final Reminder

R news written 5 days ago by stephens_sarah • 150

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News: Live webinar (Feb 12 at 12PM Eastern): variant calling for bench scientists

variant calling tutorial wes wgs news software tools written 7 days ago by Basepair • 0 • updated 7 days ago by h.mon ♦ 29k

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News: Pan-Structural Variation hackathon in the Cloud!

sv forum news sequencing written 8 days ago by Medhat ♦ 8.6k

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News: Training in Variant Analysis @NIH, March 23-26,2020

news next-gen variantanalysis variantcalling genotype written 12 days ago by AABI • 120

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News: Training in Linux for Biomedical Researchers@NIH, USA,March 16-18,2020

news programming biomedical training linux researchers written 12 days ago by AABI • 120

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News: Phase 2 Data Now Available for the precisionFDA and Georgetown ICBI Brain Cancer Challenge

gene news written 12 days ago by stephens_sarah • 150 • updated 12 days ago by Arup Ghosh ♦ 2.1k

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News: Training in Programming for Biomedical Researchers @NIH, USA,March 2-5,2020

bioinformatics researchers programming news biomedical written 26 days ago by AABI • 120

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News: Training in Creating Plots, Graphs and Maps using R @ NIH

bioinformatics news next-gen biomedical rna-seq written 14 days ago by AABI • 120

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News: Training in Advanced Transcriptomics (RNA-Seq) Analysis

news next-gen biomedical rna-seq transcriptomeanalysis written 14 days ago by AABI • 120

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News: Population Genomics course

R news next-gen snp written 14 days ago by carlopecoraro2 • 1.4k

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News: New layout for NCBI BLAST FTP database site starting February 4, 2020

blast_index ftp news blast+ written 28 days ago by genomax ♦ 78k

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News: Bioinformatics for Precision Oncology 2020 Program

news cancer rna-seq cancer biology written 19 days ago by marketing • 10 • updated 19 days ago by ATpoint ♦ 29k

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News: precisionFDA & Georgetown ICBI Brain Cancer Predictive Modeling Challenge Extension and New Incentive

genome news written 20 days ago by stephens_sarah • 150

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News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!

thanks news cwl written 3 months ago by Michael R. Crusoe • 1.8k

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News: 2nd Workshop on Single-Cell Sequencing

bioinformatics news single cell sequencing written 23 days ago by dnsv.ev • 0

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News: New precisionFDA data science challenge: Help advance postmarket surveillance techniques for FDA regulated products

R news written 25 days ago by stephens_sarah • 150

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News: 3 Days Bioinformatics & PRECISION GENOMICS Workshop

genome bioinformatics news precision written 26 days ago by rasalsi123 • 0

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News: RNAseq data analysis with R and Bioconductor

R bioconductor rna news rna-seq written 26 days ago by carlopecoraro2 • 1.4k

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News: Introduction to genome-wide association studies (GWAS)

gwas news unix R bioinformatics written 27 days ago by carlopecoraro2 • 1.4k

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News: Ensembl reduced functionality - Monday 20th January

ensembl news service written 4 weeks ago by Ben_Ensembl • 1.1k

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News: Ensembl reduced functionality, early March

ensembl news service written 4 weeks ago by Emily_Ensembl ♦ 20k

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News: Save time and money through improved onboarding of your NGS data scientists

ngs beginner data analysis news written 5 weeks ago by David Langenberger ♦ 9.2k • updated 5 weeks ago by JohnBlue81 • 300

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News: Bioinfotrmatics Service Provider

cro molecular services docking bioinformatics news written 5 weeks ago by rasalsi123 • 0

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News: 2 Days Bioinformatics & PRECISION GENOMICS Workshop

bioinformatics news next-gen genomics sequencing written 5 weeks ago by rasalsi123 • 0

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News: precisionFDA and Georgetown-ICBI Brain Cancer Predictive Modeling Challenge Submission Reminder

genome news written 5 weeks ago by stephens_sarah • 150

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Recent Replies

C: Correlation between coverage and variant calling by ATpoint ♦ 29k
I would argue that it strongly depends on the variant caller. If you use tools like `VarScan2` wh...
A: Correlation between coverage and variant calling by Kevin Blighe ♦ 54k
> I understand that a higher coverage would have given the software more > confidence to id...
A: available genotyping data by Kevin Blighe ♦ 54k
That's quite a large number. I don't believe any such dataset currently exists that is public, bu...
C: BAM file output by akshay_m180367cs • 0
I got that, but what about the array mentioned in this named 'B' ??
A: BAM file output by akshay_m180367cs • 0
I got that, but what about the array mentioned in this named 'B' ??
C: Generate count table using Samtools by Arup Ghosh ♦ 2.1k
Please include a link to the article you are talking about.
C: BAM file output by Arup Ghosh ♦ 2.1k
Read the SAM/BAM specification [document][1]. [1]: https://samtools.github.io/hts-specs/SAMv...
C: How to get 1 top hit only for each query in blastx by 2822462298 • 30
I guess this command does not apply to blastx
C: MultiQC not generating ouput ? by sunnykevin97 • 30
I'm confused, thanks for good explanation.
A: Where to download Normal exome bam for creating PoN (Panel of Normals) for cance by Karma • 270
I suggest you to use data from `http://www.internationalgenome.org/data-portal/sample` or from `h...
C: How to get 1 top hit only for each query in blastx by gb • 1.5k
Can it be ```max_hsps```? https://www.ncbi.nlm.nih.gov/books/NBK279684/
C: How to get 1 top hit only for each query in blastx by mark.ziemann • 1.2k
Duplicate question. You could try the suggested answer from a [previous post][1] [1]: https:/...

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