News:Online course: Analysis of Prokaryotic Pangenomes (Last call)
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12 weeks ago
carlopecoraro2 ★ 2.5k

Dear all,

There are only 2 seats left for the 2nd edition of the course "Analysis of Prokaryotic Pangenomes" in April (15-17).

Dive into the evolving field of pangenomics and discover the implications of genetic variation in closely related prokaryotes. Through theory and hands-on practice, you'll explore bacterial genomes, construct pangenomes, analyze gene relationships, and more.

Course website


Day 1 (Wednesday, 10 am - 6.30 pm Berlin time)

  • Introduction to pangenomics
  • Bacterial genomics fundamentals
  • Genome annotation using Prokka
  • Pangenome construction using tools like Roary and Panaroo

Day 2 (Thursday, 10 am - 6.30 pm Berlin time)

  • Relationships between genes in a pangenome
  • Networks and visualization with Gephi
  • Running Coinfinder and using Random Forests to predict gene presence/absence

Day 3 (Friday, 10 am - 5.30 pm Berlin time)

  • Final practical: Design your own experiment with provided or personal data
  • Group discussion on problems and analysis strategies

    For the full list of our courses and workshops, please have a look at:

Prokaryotic Bacterial-Genomics Pangenomics • 215 views

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