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Recent Replies
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C: Bedtools intersect/bcftools annotate dublicate the SNPs by
User000 • 280
The gene is exactly the same, the scores everything
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C: Bedtools intersect/bcftools annotate dublicate the SNPs by
User000 • 280
oh, I use annotate only to append the gene name in the INFO field...
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A: Bedtools intersect/bcftools annotate dublicate the SNPs by
Carlo Yague • 4.9k
Could it be that some SNP fall onto multiple genes ? Because of overlapping genes or sense/antise...
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A: Bedtools intersect/bcftools annotate dublicate the SNPs by
User000 • 280
Found the solution: https://groups.google.com/forum/#!topic/bedtools-discuss/Vi1-PVGqH18
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C: How to find positions in the alignments at which the target sequence is not iden by
iCosmoso • 0
I just want the positions or basically the index, yes. I want to print out/or report the position...
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C: Whats best practice for Gene set enrichment analysis? by
caggtaagtat • 930
Thank you, I will give this a try.
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It's not explicit on there, but you only have to pay if you either (A) go over the page limits or...
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EagleEye ♦ 6.6k
Have a look at this simple tool which works with most updated database, https://www.biostars.org/...
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EagleEye ♦ 6.6k
Dear tarashanst, It looks good. But the point of GO enrichment tools is to reduce the workload f...
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small question. I have the sorted.bam files from `Hisat2` alignment. Can I use those bams for `RS...
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If you do have to do them all separately, can they all be gathered up and easily studied together...
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Will this also be the case for exome data? Ideally I'd like to run all chr's at once too. A sec...
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