User: pramach1

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pramach10
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Posts by pramach1

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Trouble filtering Blastn output csv's by pident, qcov, and stitle using Rstudio
... mydata1 <- lapply(data, function (x) x[(x$qcovs > 90),]) The code you sent didnt work. So i modified it a little bit and it works. Thank you so much. Saved me a lot of time. I was planning on removing duplicate rows from the column after filtering. Your code gave me an idea of how to do t ...
written 13 days ago by pramach10
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Comment: C: Using R studio to process multiple blastn outputs(csv files) and filter based on
... Thank you. I am a newbie here. I appreciate the help. ...
written 14 days ago by pramach10
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Comment: C: Using Rstudio to bulk split CSV tabs into columns.
... Thank you. Actually it worked. strings <- str_split_fixed(csv$col1, " ", 5) Even though the strings said "no data available", the actual csv list has separated into 5 columns. I apologize for not noticing this earlier. ...
written 19 days ago by pramach10
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Comment: C: Using Rstudio to bulk split CSV tabs into columns.
... Even if I have to separate using a pipe separator, how would i do that in a list of files? I have tried strings <- str_split_fixed(csv$col1, "|", 8) it doesnt work. I am unable to attach an image or run dput(head(csv[[1]])). I apologize. My computer security settings is not letting me do i ...
written 19 days ago by pramach10
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Comment: C: Using Rstudio to bulk split CSV tabs into columns.
... "1932:@M05996:27:000000000-CFP53:1:1101:19611:2120 gb|AF144880|+|3541-3979|ARO:3002569|AAC(6')-Iy gb|AF144880|+|3541-3979|ARO:3002569|AAC(6')-Iy [Salmonella enterica subsp. enterica serovar Enteritidis] 98.261 46" "1932:@M05996:27:000000000-CFP53:1:1101:19611:2120 gb|AE006468.2|+|1707351-17 ...
written 19 days ago by pramach10 • updated 16 days ago by zx87549.7k
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Comment: C: Using Rstudio to bulk split CSV tabs into columns.
... If I use csv <- do.call(rbind, lapply(fnames, read.csv)) This is the error i get. Error in match.names(clabs, names(xi)) : names do not match previous names ...
written 20 days ago by pramach10 • updated 20 days ago by RamRS30k
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Comment: C: Using Rstudio to bulk split CSV tabs into columns.
... Thank you. Since I have differing number of rows this is not working. The error i get is Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows: 2652, 0 ...
written 20 days ago by pramach10 • updated 20 days ago by RamRS30k
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Comment: A: Using Rstudio to bulk split CSV tabs into columns.
... Thank you. Since I have differing number of rows this is not working. The error i get is Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows: 2652, 0 ...
written 20 days ago by pramach10 • updated 20 days ago by RamRS30k

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