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1,000 results • Page 1 of 20
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4
votes
6
replies
531
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 2 days ago by 41k • written 4 days ago by • 0
1
vote
1
reply
285
views
Forum: want to work in open source project/project in bioinformatics
project
updated 2 days ago by 41k • written 11 days ago by • 0
2
votes
5
replies
664
views
Forum: Current Trends in Bioinformatics
structural-bioinformatics
updated 2 days ago by 41k • written 29 days ago by • 0
21
votes
11
replies
2.0k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 15 days ago by 22k • written 9 months ago by ▴ 140
175
votes
46
replies
18k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
17 days ago by Istvan Albert 99k
3
votes
2
replies
384
views
Forum: RNA-Seq data analysis - question
Python RNA-Seq R
updated 29 days ago by ▴ 10 • written 29 days ago by ▴ 40
0
votes
0
replies
191
views
Forum: How to learn bioinformatics online?
self-education education learning
updated 5 weeks ago by 41k • written 5 weeks ago by • 0
6
votes
5
replies
2.0k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
5 weeks ago by tshtatland ▴ 180
7
votes
9
replies
1.1k
views
6 follow
Forum: Mentor for a beginner bioinformatics student
project mentor
5 weeks ago by UT_FAN ▴ 40
0
votes
0
replies
222
views
Forum: Steps after doublet detection in single cell data
scRNA doublet
8 weeks ago by ishwarvh • 0
0
votes
0
replies
193
views
Forum: Automated Checks And QA
retrospective
8 weeks ago by Sasha ▴ 770
7
votes
13
replies
978
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 6 weeks ago by 41k • written 9 weeks ago by ▴ 10
21
votes
7
replies
11k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 9 weeks ago by ▴ 100 • written 7.7 years ago by 11k
3
votes
3
replies
583
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 10 weeks ago by 41k • written 10 weeks ago by • 0
19
votes
14
replies
1.4k
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 10 weeks ago by 22k • written 11 weeks ago by ▴ 70
19
votes
10
replies
1.2k
views
Forum: Pain points using commercial clouds
gpt tinybio
updated 11 weeks ago by ▴ 70 • written 3 months ago by ▴ 770
9
votes
6
replies
1.5k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 12 weeks ago by 78k • written 12 months ago by ▴ 30
3
votes
2
replies
422
views
Forum: How to contribute to the next edition of Biostars Handbook
handbook
updated 3 months ago by 41k • written 3 months ago by ▴ 20
3
votes
6
replies
993
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
3 months ago by anasjamshed ▴ 120
2
votes
5
replies
725
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 7 weeks ago by 41k • written 3 months ago by • 0
2
votes
9
replies
890
views
Forum: open source projects looking for contributors
open-source
updated 12 weeks ago by ▴ 70 • written 3 months ago by ▴ 20
0
votes
0
replies
382
views
Forum: Recruiters: what do you expect on a junior bioinformatician?
career skills
updated 3 months ago by 41k • written 3 months ago by ▴ 20
3
votes
4
replies
743
views
Forum: Discussion: Uploading terabytes of data to NCBI SRA
NCBI WGS archiving servers remote
updated 3 months ago by 136k • written 3 months ago by ▴ 130
0
votes
0
replies
341
views
Forum: I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 3 months ago by 41k • written 3 months ago by ▴ 10
1
vote
3
replies
553
views
Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 3 months ago by 136k • written 3 months ago by ▴ 550
11
votes
8
replies
961
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 3 months ago by 41k • written 3 months ago by ▴ 10
363
votes
58
replies
66k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 7 weeks ago by 41k • written 13.8 years ago by 99k
1
vote
2
replies
10k
views
Forum: Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear latent batch-effect variable GLM
4 months ago by LauferVA 3.8k
0
votes
3
replies
3.7k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 12 months ago by ▴ 120
2
votes
3
replies
599
views
Forum: Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 4 months ago by 136k • written 5 months ago by 3.8k
0
votes
2
replies
828
views
Forum: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 5 months ago by 10k • written 5 months ago by • 0
33
votes
23
replies
3.4k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 5 months ago by 22k • written 6 months ago by 3.8k
7
votes
8
replies
1.3k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
5 months ago by K • 0
2
votes
3
replies
654
views
Forum: Mapping a predicted sequence to a genome
predicted map alignment sequence
updated 6 months ago by ★ 25k • written 6 months ago by • 0
0
votes
0
replies
328
views
Forum: Recommendation sought for differential exon usage of a single gene
splicing differential-exon-usage
updated 6 months ago by 41k • written 6 months ago by ▴ 10
7
votes
4
replies
868
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 6 months ago by 41k • written 6 months ago by 3.8k
2
votes
2
replies
452
views
Forum: Colleges
Colleges india universities
updated 6 months ago by 41k • written 6 months ago by • 0
19
votes
15
replies
1.7k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 6 months ago by 41k • written 5.6 years ago by 5.3k
120
votes
33
replies
38k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 7 months ago by ★ 2.4k • written 10.3 years ago by 11k
100
votes
38
replies
29k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 14 days ago by 22k • written 10.1 years ago by ★ 3.6k
26
votes
12
replies
7.3k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 7 months ago by ▴ 10 • written 10.1 years ago by ▴ 50
0
votes
2
replies
622
views
Forum: How to start in bioinformatics?
career
updated 7 months ago by 41k • written 7 months ago by • 0
3
votes
4
replies
1.0k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
7 months ago by cwaingartentrabajo • 0
12
votes
5
replies
1.5k
views
6 follow
Forum: Bioinformatics opportunities in Europe?
career
updated 7 months ago by ▴ 40 • written 7 months ago by • 0
18
votes
14
replies
1.7k
views
7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
7 months ago by Simon ▴ 40
0
votes
0
replies
6.9k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
8 months ago by Alexandre Eeckhoutte • 0
11
votes
11
replies
1.4k
views
7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
updated 8 months ago by 3.8k • written 8 months ago by ▴ 30
4
votes
2
replies
577
views
Forum: advice on course selection for a bioinformatics career.
career
updated 8 months ago by 99k • written 8 months ago by • 0
0
votes
1
reply
448
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 9 months ago by 136k • written 9 months ago by • 0
4
votes
1
reply
646
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 9 months ago by 136k • written 9 months ago by 5.8k
1,000 results • Page 1 of 20
Recent Votes
A: Get number of variations in a huge VCF using Tabix?
Peak annotation with HOMER. Statistics with the annStats parameter
Answer: How to create a mutation frequency comparison plot?
Answer: Ambient RNA removal method that generates whole (integer) counts
A: Is It Valid To Convert A Fold Change Matrix Into Z Score?
Answer: Fast way to extract specific sequences from large fasta
Answer: Can anyone share me a good GATK4 workflow
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Scholar to rpolicastro 12k
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Popular Question to Omics data mining ▴ 220
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Recent Replies
Comment: Resolving over clustered NGS with Q-scores by sam.himes92 • 0
Yes at 5%.
Comment: Resolving over clustered NGS with Q-scores by ATpoint 78k
Has phiX been spiked in to increase nucleotide diversity.
Comment: How is "integer score for display" calculated in MACS2 by SplitInf ▴ 10
since this is one of the top search results, I'm cross-posting this comment from another user (alexbarrera) "that the values of the 5th co…
Comment: Very low successfully assigned alignments with feature counts by Istvan Albert 99k
Load up your data in IGV and visualize it relative to your annotation file. It will tell you where the data aligns. 5% match on a 99% ali…
Answer: Ambient RNA removal method that generates whole (integer) counts by jared.andrews07 ★ 16k
I've definitely just rounded soupX output and had no issues with pseudobulking. A colleague speaks highly of Cellbender, though it take…
Comment: Curated model organism gene functional annotations by manaswwm ▴ 490
I thought Interproscan already has species-specific information, for example [this][1] page for Buchnera aphidicola. You can try to search …
Comment: Aligning sequences with multiple genetic codes! by 5heikki 11k
I don't understand your problem. What do you mean when you write: > These genes even in the same species may use different genetic codes. …
Comment: An issue with gtf file (ballgownrsem) by cucindarko51 • 0
I also encountered issues when running ballgownrsem with gff files. Ballgown object was created, there is no informations about TPM and FPK…
Answer: Scanpy Pearson residual PCA error by Maëlick • 0
I had the same problems and then realize that I forgot the preprocessing! If you add this commands before running the PCA, it should work:…
Comment: Calculate GC content for entire chromosome by colindaven 5.8k
Try tripling your example seq length, see 20bp min region -l INT min region length to output [20] To answer your question, it …
Comment: Very low successfully assigned alignments with feature counts by GenoMax 136k
Is the genome/annotation from the same source i.e. Ensembl or so it appears?
Comment: Calculate GC content for entire chromosome by ATpoint 78k
What does this do? It's not documented well and does not work for me in terms of, it produces no output: cat foo.fa >chr1 GCGC…
Comment: Need help to find FASTA sequence from dbSNP by GenoMax 136k
Did you not see the last part in my comment above about how to get the sequence?
Comment: Execute R command on specific termimal by QX • 0
Hi @atpoint Thank you for your answer!
Comment: Need help to find FASTA sequence from dbSNP by syedahumairagillani • 0
Thank you for your response. Actually I am looking for fasta sequence of SNP as I shared via image, rather than just location. Would you p…
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