User: tshtatland

gravatar for tshtatland
tshtatland40
Reputation:
40
Status:
New User
Location:
United States
Website:
http://ksvetu.blogspot...
Last seen:
4 weeks ago
Joined:
4 years, 1 month ago
Email:
t*********@gmail.com

Posts by tshtatland

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Edit score column in bed file
... My preferred choice is to write the regions as a bed file from your code (python, etc). Then use standard bioinformatics tools, here `bedtools intersect` with option `-loj` (Left outer join. Report features in A with and without overlaps. See: [https://bedtools.readthedocs.io/en/latest/content/tools ...
written 7 months ago by tshtatland40
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Comment: C: Maintaning internal or private installation of Biostar or a similar Q&A site
... A private installation of Biostar-like site would be similar in spirit to a private or local installation of any other tool, and of course it would require customization (and maintenance, hence the question). Only internal users can change or view the content. The content discussed there is specific ...
written 2.2 years ago by tshtatland40
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Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
... Does anyone have experience installing and maintaining Biostar or a similar Q&A platform in-house (private, not open to public)? We are looking for a Q&A web application, suitable for low traffic, less than 1000 users, with varying computer skills. Any advice or recommendations are appreciat ...
forum biostar written 2.2 years ago by tshtatland40 • updated 2.2 years ago by Jean-Karim Heriche21k
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Answer: A: BWA error [bns_restore_core] Parse error reading
... See the answer from Vijay Lakhujani above. More specifically, remove whitespace from the fasta reference **sequences** (whitespace in fasta header is okay). See also: Burrows-Wheeler Aligner / Mailing Lists https://sourceforge.net/p/bio-bwa/mailman/message/33230220/ https://sourceforge.net/p/bio-b ...
written 2.4 years ago by tshtatland40

Latest awards to tshtatland

Scholar 7 months ago, created an answer that has been accepted. For A: Edit score column in bed file

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