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valid worry indeed ;)
and the effect on the downstream analysis will be depending on the type of such analysis. Eg.gene annotation will no…
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Ah sorry I meant using the post filtering smallest read length as your twice read length threshold.
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Comment: Genome assembly, removal of conting below 300 bp?
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I would apply that on the (near) final assembly result, so not in the beginning or in the read filtering steps.
Yeah, that's my frustratio…
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Yes, because it looks like it is scanning your local folders for plugins which is probably not what is supposed to happen when running via …
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> twice the read length of the input reads.
Would you ever do that on the post filtering input read length or just the initial?
I have c…
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You can use the `blastdbcmd` command to extract sequences (or ranges of it) directly from the blastDBs. Using the tabular blast output (as …
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don't think there is a general consensus for this.(bluntly said; people likely use what fits their 'story' best )
A rule I always applie…
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