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Recent Replies
Answer: understanding snpEff/snpSift concordance output
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sara.wennersten
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Hi,
Have you figured out how to interpret the results?
Thanks!
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Hi @anamaria. Did you ever figure out how to interpret the output of the concordance SNPSift output files?
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Hi @Apoorva. Did you ever figure out how to interpret the output of the concordance SNPSift output files?
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I am not using either of those tools. I am normalizing using RPKM which accounts for changes in library size across samples. Why do you thi…
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Please don't copy-paste job postings; they become walls of text. Invest some time into formatting the post so it's more readable.
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Hey do you get some answers for this? I am also using featurecounts now, paired ends RNAseq, and I am not sure if i have to use specify str…
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The relationship of the two structures is tested by [**structural alignments**][1]. There are many servers and programs to do that.
I sh…
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I guess correlation analysis should be fine for this task, but before doing the analysis you need to normalise your data. I would suggest t…
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1. Subpopulation IDs are not present in the .vcf.gz files. You must download either their .ped (note that that is NOT a "plink .ped"-forma…
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Based on my conversation with the author, merging to diploid individuals would be the easiest route.
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thanks for following up and summarizing, it will help future readers
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So, I was missing `-p` when running featureCounts. Silly me.
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