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<prev • 61,108 results • page 1 of 2037 • next >
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Creating your own substitution matrix from an alignment
software error alignment written 6 minutes ago by mdsiddra • 0
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8
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Variant calling on RNA seq using GATK pipeline
rna-seq written 17 minutes ago by renu18july • 0
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2
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152
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Plotting the expression values for two genes in a range of cells
R ggplot2 written 1 day ago by Za • 40
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10
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Some questions about write human mitochondrial variants into VCF file
vcf mtdna written 53 minutes ago by MatthewP • 0
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Comparative measure of phylogenetic tree resolution
phylogeny evolution bootstrap statistics written 1 hour ago by jnf3769 • 40
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28
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1
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How to know if a variant is sequencing or mapping artifact?
variant vcf file freebayes written 2 hours ago by kspata • 10 • updated 1 hour ago by finswimmer ♦ 2.8k
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1
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Tool: Transcription Factor Binding Sites, Motifs and Expression Profiles from ~10200 ChIP-seq and ~20000 RNA-seq samples
transcription factor lncrna chip-seq tool mirna written 20 months ago by lsp03yjh • 550
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68
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1
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Can't find chr1 in a large fasta file using samtools/htsjdk
fasta assembly reference samtools written 16 hours ago by ljw1001 • 0 • updated 2 hours ago by Eric Lim • 600
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1
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24
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1
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Genome assembly and annotation
assembly written 2 hours ago by biodano.geo • 0 • updated 2 hours ago by Philipp Bayer ♦ 5.5k
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57
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What is the optimal read length filter for Kallisto post adapter removal?
kallisto rna-seq written 2 days ago by bipin • 0
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33
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Dose repeatability and reproducibility need to test while validate a fixed bioinformatics pipeline for SNV calling ?
next-gen snp sequencing written 3 hours ago by lzy • 0
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24
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Finding NEW Somatic Cancer Mutation Databases
somatic database cancer mutation data written 3 hours ago by biogirl • 0
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2
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33
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2
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taxid to genome refseq accession number
genome taxid refseq accession number genome written 4 hours ago by ruchikabhat31 • 30 • updated 3 hours ago by genomax ♦ 50k
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29
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Extract codon information from VCF file
R snp written 4 hours ago by k.rajain1212 • 0
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Mapping paired-end reads to a draft genome using HISAT2
genome guided alignment rna-seq hisat2 written 5 hours ago by Farbod • 3.1k • updated 5 hours ago by genomax ♦ 50k
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8 follow
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Has Anyone Tried Rum For Aligning/Counting Illumina Rna-Seq Data?
alignment rna written 6.9 years ago by Travis • 2.8k • updated 5 hours ago by Biostar ♦♦ 20
354
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16
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24k
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164 follow
16
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 18 months ago by Istvan Albert ♦♦ 77k • updated 5 hours ago by Vijay Lakhujani ♦ 2.5k
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688
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Error:abundance_estimates_to_matrix.pl [.isAllZero(counts) : counts must be positive finite values]
software error rna-seq written 5 months ago by jieandze1314 • 0 • updated 6 hours ago by qzhang24 • 0
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1
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98
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1
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assemblers choose high k-mers: what does that mean?
assembly metagenomic written 12 hours ago by willnotburn • 40
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1
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132
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1
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Cluster RNA sequences from fasta alignment by identity threshold
sequences identity rna rna alignment clustering written 7 weeks ago by filip7grudzien • 0 • updated 11 hours ago by Biostar ♦♦ 20
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2
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108
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2
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Mapping and annotating DNA binding regions from ChIP-Seq to nearby gene
annotation chip-seq written 3 days ago by oriolebaltimore • 60
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67
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Job: Job: Postdoc position in Computational Biology/Systems Genetics
genome job rna-seq computational biology written 12 hours ago by pejman.m • 0
4
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73
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De novo assembly programm
assembly written 14 hours ago by Toto26 • 10
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1
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76
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1
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Matched paired DEA analysis of BRCA samples using TCGAbiolinks, works for paired = FALSE but not paired = TRUE
tcgabiolinks R rna-seq written 2 days ago by aluesley1 • 20 • updated 14 hours ago by Kevin Blighe ♦ 21k
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48
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p-values in GTEx
gene expression snp written 15 hours ago by kakukeshi • 20
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71
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Trimming reads of Chipseq samples
alignment chip-seq written 1 day ago by GK1610 • 30 • updated 17 hours ago by Devon Ryan ♦ 81k
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78
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1
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How to calculate read frequency from raw count data
R rna-seq written 1 day ago by vkgaur25 • 20 • updated 17 hours ago by Devon Ryan ♦ 81k
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84
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Problems in identifying heterozygous transcripts using de novo transcriptome assembly via Trinity (galaxy)
assembly rna-seq transcriptome written 5 weeks ago by aih5 • 0 • updated 17 hours ago by Biostar ♦♦ 20
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31
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(Closed) can not upload bedgraph and bigwig data into WashU browser
software error chip-seq written 18 hours ago by mikysyc2016 • 10
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34
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Question about CHromHMM overlap enrichment
chromhmm chip-seq segmentation written 18 hours ago by josruirod • 10
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