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List of genome builds corresponding to ENS.Db versions
assembly written 10 hours ago by cf556 • 0 • updated 6 minutes ago by genomax ♦ 76k
7
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2
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203
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8 follow
2
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ATAC-seq sample normalization (quantil normalization)
normalization chip-seq atac-seq written 4 weeks ago by Flo • 30 • updated 28 minutes ago by zx8754 ♦ 8.8k
3
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1
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71
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1
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(scRNA) bustools transcript to gene file
ensembl scrna kallisto nextflow bustools written 16 hours ago by Barry Digby • 240 • updated 34 minutes ago by Emily_Ensembl ♦ 20k
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45
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Circos plot tool
R next-gen sequence written 3 hours ago by 9521ljh • 10 • updated 2 hours ago by zx8754 ♦ 8.8k
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28
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0
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How to decrease the number of candidate TFs binding to gene promoter region
regulation promoter tfbs tf written 3 hours ago by Shicheng Guo • 8.0k
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1
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69
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8 follow
1
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How to analyze the RNAseq paired samples with DESeq2?
R rna-seq written 9 hours ago by Kenneth • 0 • updated 3 hours ago by Ömer An • 190
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156
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Clustering tissues using gene expression data
gene-expression clustering written 3 months ago by Natasha • 40 • updated 3 hours ago by Biostar ♦♦ 20
480
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20
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231 follow
20
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 3.1 years ago by Istvan Albert ♦♦ 82k
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45
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How to find both primers on reads?
software error assembly next-gen snp R written 4 hours ago by xatabadich • 0
1
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1
answer
50
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1
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Flanking sequence retreival
fasta sequence extraction variants written 9 hours ago by nadiabeg.comsats • 0 • updated 4 hours ago by finswimmer ♦ 13k
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41
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0
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Tool to design Q-PCR primers with exon skipping?
splicing exon primer written 6 hours ago by gabriel.monteiro233 • 0
0
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0
answers
32
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PASNP genotype data
snp genotyping written 7 hours ago by Hadi M • 20
0
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1
answer
45
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1
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bcftools sec for multiple files
snp written 9 hours ago by evelyn • 80 • updated 7 hours ago by metageni • 60
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40
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Snakemake wildcards: Not all output, log and benchmark files of rule sortBAM_bbb contain the same wildcards.
wildcards workflow sortbam snakemake rna-seq written 8 hours ago by whelenakanya • 0
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72
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PLINK --allow-extra-chr error
plink written 23 hours ago by dumeir • 10
7
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1
answer
5.8k
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1
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Translate Dna To Protein Using Transeq
dna written 5.8 years ago by MAPK • 1.5k • updated 9 hours ago by Biostar ♦♦ 20
0
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39
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Recs for what to use for analyzing IBS sharing (from phased, imputed VCFs)?
ibd written 11 hours ago by devenvyas • 610
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1
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95
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1
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Is there any way to download knownCanonical set from the NCBI Refseq track as it is possible for the UCSC track ?
table browser ucsc canonical refseq hg19 written 12 days ago by lakhujanivijay ♦ 4.7k • updated 11 hours ago by jnavarr5 • 0
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51
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BaseRecalibrator takes forever to run. Any suggestions?
gatk whole exome written 14 hours ago by khorms • 40
13
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3
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162
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6 follow
3
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Journals for rapid publication in computational biology
scrna-seq R scrna rna-seq big data written 1 day ago by asifadil • 60 • updated 12 hours ago by JC ♦ 9.3k
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53
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Break_blocks conversion of gvcf -> vcf
genome vcf written 12 hours ago by dec986 • 210
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51
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How to build hisat2 index on scaffold level genome assembly
genome assembly alignment rna-seq sequencing written 12 hours ago by tulika98 • 0 • updated 12 hours ago by ATpoint ♦ 28k
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37
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ViennaRNA-1.8.4 install error CAP-miRSeq
software error cap-mirseq rna-seq viennarna written 12 hours ago by jomagrax • 0
1
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65
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protein databases with GI numbers
ncbi database nr protein blastp written 14 hours ago by yp19 • 50
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2
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2.1k
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2
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FASTA file to Karyotype file
fasta karyotype circos written 3.5 years ago by The Last Word • 180 • updated 14 hours ago by eennadi • 0
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35
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Plink SNP association with Drug Sensitivity Resistance Testing values
genome next-gen snp sequencing written 15 hours ago by kokyriakidis • 0
0
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84
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N50 for de novo assembly result is too short
assembly sequence sequencing written 15 hours ago by nisrinalulu • 10
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1
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106
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1
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PLINK input files from Genome Studio
software error snp written 2 days ago by matziast • 0
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1
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Alignment with STAR produces unique bam files, but identical output from bedtools multicov
bedtools samtools star written 3.7 years ago by dec986 • 210 • updated 15 hours ago by Biostar ♦♦ 20
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44
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minimap2 cigar entry
genome alignment sequencing written 15 hours ago by zinderelly • 0
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