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Answer: SRA paired downloading issue
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GenoMax
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That is data in color space from a technology called SOLiD. Stay away from it if you can. Current aligners do not support this type of data…
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They have a tutorial, try that first: https://bustools.github.io/BUS_notebooks_R/velocity.html#preprocessing
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Yes. In this case the 3p arm will be the dominant one. ALso if you look under the record for "Mature Sequence for hsa-miR-373-3p" you'll se…
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I have tried kallisto|bustools for the smart-seq2, seems kb count is working. How will I proceed further? I have the following out files ge…
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check reads are aligned in the genes using IGV. Then make sure the chromosome names in the annotation file / database in R are the same as …
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I continued the analysis in R but I realized that all the genes are zero, where is my problem?
Answer: Logos building from pwm (help)
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Paul
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Try:
[MAKE LOGO FROM MATRICES version 1][1]
[MAKE LOGO FROM MATRICES version 2][2]
[MAKE LOGO FROM MATRICES version 3][3]
…
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Try an independent implementation [from the motif set to the Sequence logo][1], or a direct offline application here: [Make a Sequence L…
Answer: generate motif sequence logo
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Paul
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Offline Sequence Logo tool that has no dependencies: [Sequence Logo][1]
More here: [Make a Sequence Logo in your browser by using native …
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**Try this [Sequence Logo tool][1].**
For all uppercase you get:
TTGAATAATGTCTTCATGTTTAGAATCAT
TGAAATGCACCTGTCTTTTCTAGAAG…
Comment: Make a Sequence Logo in your browser by using native Javascript.
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Paul
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Thank you, I didn't see that. Corrections were made.
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Looks like you can find [those results here][1] at SNPedia site. Go to the bottom of the page and the click on `further results`. You can d…
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