updated 37 minutes ago by
Pierre Lindenbaum
140k
•
written 1 hour ago by
priya.bmg
•
0
0
votes
1
reply
17
views
0
votes
0
replies
8
views
42 minutes ago by
aleksey.rukhlenko
•
0
0
votes
0
replies
7
views
0
votes
2
replies
55
views
0
votes
0
replies
18
views
0
votes
1
reply
35
views
updated 1 hour ago by
antonioggsousa
★
2.3k
•
written 3 hours ago by
almogangel
•
0
2
votes
3
replies
452
views
0
votes
4
replies
200
views
3 hours ago by
graeme.thorn
▴
60
2
votes
1
reply
62
views
updated 5 hours ago by
colindaven
★
3.4k
•
written 6 hours ago by
andres.firrincieli
★
2.0k
0
votes
0
replies
46
views
0
votes
3
replies
100
views
updated 4 hours ago by
cpad0112
17k
•
written 6 hours ago by
a.krassnig
•
0
633
votes
159
replies
74k
views
95 follow
1
vote
1
reply
45
views
updated 1 hour ago by
lieven.sterck
12k
•
written 6 hours ago by
ctdarwell
•
0
0
votes
6
replies
152
views
updated 1 hour ago by
MirianT_NCBI
▴
10
•
written 7 hours ago by
emawhitt
•
0
0
votes
0
replies
36
views
7 hours ago by
valentinavan
▴
20
0
votes
2
replies
152
views
updated 7 hours ago by
Pierre Lindenbaum
140k
•
written 16 hours ago by
clinnaeus
▴
10
1
vote
2
replies
106
views
0
votes
0
replies
44
views
0
votes
2
replies
122
views
updated 2 hours ago by
rpolicastro
6.7k
•
written 11 hours ago by
koushik.vf09
▴
20
1
vote
1
reply
128
views
2
votes
15
replies
1.7k
views
10 follow
updated 14 hours ago by
1505915157
•
0
•
written 18 months ago by
brallen
▴
20
0
votes
0
replies
45
views
0
votes
2
replies
297
views
updated 11 hours ago by
cpad0112
17k
•
written 17 hours ago by
Hosny.yasmine123
•
0
0
votes
0
replies
44
views
4
votes
4
replies
169
views
updated 17 hours ago by
rpolicastro
6.7k
•
written 18 hours ago by
June
▴
10
0
votes
6
replies
249
views
0
votes
0
replies
53
views
updated 18 hours ago by
Pierre Lindenbaum
140k
•
written 19 hours ago by
Anupriya
•
0
2
votes
3
replies
158
views
1
vote
3
replies
147
views
0
votes
1
reply
104
views
updated 20 hours ago by
rpolicastro
6.7k
•
written 21 hours ago by
bookorg
•
0
0
votes
3
replies
148
views
1
vote
3
replies
139
views
updated 20 hours ago by
rpolicastro
6.7k
•
written 21 hours ago by
Space_Life
▴
40
0
votes
4
replies
143
views
updated 37 minutes ago by
Sam
★
4.1k
•
written 21 hours ago by
dmitry.s.kolobkov
•
0
0
votes
0
replies
54
views
21 hours ago by
v.berriosfarias
▴
30
4
votes
6
replies
1.9k
views
6 follow
updated 21 hours ago by
HenriettaHolze
•
0
•
written 4.3 years ago by
aleksanderczeszyk
•
0
0
votes
2
replies
108
views
updated 20 hours ago by
Pierre Lindenbaum
140k
•
written 21 hours ago by
michael.flower.14
▴
30
0
votes
3
replies
134
views
0
votes
2
replies
187
views
0
votes
1
reply
83
views
updated 22 hours ago by
Pierre Lindenbaum
140k
•
written 1 day ago by
tea.vuki
•
0
0
votes
1
reply
104
views
updated 11 hours ago by
seidel
8.6k
•
written 23 hours ago by
Jesus Uriel
•
0
0
votes
2
replies
93
views
updated 3 hours ago by
antonioggsousa
★
2.3k
•
written 23 hours ago by
pragathi.sneha91
•
0
5
votes
5
replies
427
views
0
votes
2
replies
111
views
updated 1 day ago by
cpad0112
17k
•
written 1 day ago by
marcus.teixeira
•
0
0
votes
1
reply
198
views
updated 1 day ago by
Rory Stark
★
1.3k
•
written 8 weeks ago by
Drew
•
0
0
votes
0
replies
53
views
3
votes
4
replies
582
views
1
vote
0
replies
88
views
0
votes
3
replies
141
views
2
votes
2
replies
111
views
0
votes
0
replies
42
views
Recent Votes
Recent Locations •
All
Ireland, just now
Texas, just now
University of Maryland, 1 minute ago
United States, 1 minute ago
South Africa, 2 minutes ago
United States, 2 minutes ago
European Union, 2 minutes ago
Recent Awards •
All
Teacher to
James Ashmore
★
3.2k
Commentator to
Istvan Albert
90k
Popular Question to
DNAngel
▴
210
Popular Question to
chrisclarkson100
▴
120
Teacher to
Alex Reynolds
33k
Teacher to
Jorge Amigo
13k
Recent Replies
Comment: Convertion Of Gff3 To Gtf
by
Juke34
★
6.4k
Yes it does not... yet. No special reason for that, it can probably be implemented
Comment: One-hot encoding for PLINK or VCF
by
Sam
★
4.1k
I see. Then I don't know if there's anything like that. Out of interest, can't you also represent the same data with 000, 001, 010 and 100?…
Answer: Filtering of rare variants
by
Pierre Lindenbaum
140k
using vcffilterjdk http://lindenb.github.io/jvarkit/VcfFilterJdk.html
java -jar dist/vcffilterjdk.jar -e ' final Set<String> sns = ne…
Comment: One-hot encoding for PLINK or VCF
by
Sam
★
4.1k
I see. Unfortunately, I don't know of anything for that. Also, won't you be able to represent the data in 3 bytes instead? 000, 001, 010 an…
Comment: Blastx only uses one thread when word size is above 3
by
HenriettaHolze
•
0
Hi Guzman, I see a similar pattern. Did you find the reason for this behavior or a solution?
Best, Henrietta
Comment: Convertion Of Gff3 To Gtf
by
schlogl
▴
90
@Juke34 seems tha aga doesn' t work with gzip files? Why?
Paulo
Comment: Create junctions from Bed file for IGV visualization
by
Buffo
★
1.9k
Thanks for your suggestion. Visualizing "interaction arcs" is what I need, not sure if it is possible using Epigenome Browser, I will take …
Comment: Combining Microarray and RNA-Seq datasets visualization and comparison
by
mohammedtoufiq91
▴
120
Hi @atpoint
Thank you for the response. Yes, all datasets have infected vs. control. However, there are couple of dataset with others, so …
Comment: Gene annotation for Andrographis paniculata
by
lieven.sterck
12k
without looking into the detail of this: it's not because people submitted their assembly they also have to add the annotations (these are …
Comment: Correct usage of FindConservedMarkers() in Seurat
by
antonioggsousa
★
2.3k
Hi,
Yes, it sounds good to me, if your aim is to find the conserved markers between metastatic clusters (1 and 5) and the remaining clust…
Comment: NCBI datasets bulk protein fasta download
by
MirianT_NCBI
▴
10
From the ncbi_dataset folder, you can run this one-liner:
mkdir proteins; for f in data/*/protein.faa; do out=$( echo $f | cut -f2 -d'…
Comment: VCF samtools
by
Istvan Albert
90k
most likely it is a default filtering issue. freebayes will pass less reliable variants, the default p-value threshold for bcftools is 0.5
…
Comment: Combining Microarray and RNA-Seq datasets visualization and comparison
by
ATpoint
55k
Do all these datasets have infected and control samples or are some with only one or the other?
Comment: NCBI datasets bulk protein fasta download
by
GenoMax
110k
You could look at:
https://stackoverflow.com/questions/16266930/how-to-rename-files-in-folders-to-foldername-using-batch-file<br>
https://…
Comment: Error while converting Gene ID to Ensembl IDs
by
rpolicastro
6.7k
As Kevin said there won't always be a perfect mapping between different ID types. One option is to join the two datasets and fill in NA for…
Traffic: 4188 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6