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4
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3
answers
89
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3
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know the grep command for fastq file
rna-seq written 2 days ago by harry • 0 • updated 21 minutes ago by brian.fristensky • 40
3
votes
2
answers
118
views
2
answers
Best Genome Assembler and Genome Annotation tools and pipelines
genome assembly tools birds annotation written 4 days ago by margab • 10 • updated 29 minutes ago by brian.fristensky • 40
0
votes
0
answers
46
views
0
answers
vcflib-popstats to calculate FIS of a subpopulation
vcflib popstats written 3 days ago by Sam • 110
0
votes
1
answer
75
views
1
answer
Tutorial: Extract specific genes from a FASTA file.
gene fasta tutorial sequence bash written 13 hours ago by alexandru.bologa.marian • 0 • updated 41 minutes ago by brian.fristensky • 40
0
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0
answers
20
views
0
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Model Matrix Interacting model
next-gen rna-seq edger model/design matrix written 2 hours ago by akh22 • 30
0
votes
1
answer
38
views
1
answer
Sample Mouse RNA-Seq Dataset
rna-seq written 3 hours ago by isu2017 • 0 • updated 2 hours ago by EagleEye ♦ 6.4k
0
votes
0
answers
112
views
0
answers
Weights in cnvkit cnr output
cnvkit written 9 weeks ago by biologist • 10 • updated 3 hours ago by Biostar ♦♦ 20
0
votes
1
answer
59
views
1
answer
Bowtie2 simple alignment errors?
bowtie2 alignment bowtie written 5 hours ago by vctrm67 • 0 • updated 4 hours ago by h.mon ♦ 26k
0
votes
0
answers
74
views
0
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Calculate disease risk based on the genoytype of some SNPs?
prsice gwas prs plink snp written 1 day ago by miguelcarnero • 0
0
votes
0
answers
39
views
0
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(Closed) Difference between Illumina indexes and Illumina barcode?
illumina sequencing indexes barcode written 6 hours ago by Tman • 0
454
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19
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39k
views
215 follow
19
answers
News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 2.6 years ago by Istvan Albert ♦♦ 80k • updated 6 hours ago by chantelmarshal321 • 0
0
votes
0
answers
47
views
0
answers
CNV analysis for tumor panel
cnv written 1 day ago by J.F.Jiang • 750
1
vote
1
answer
75
views
1
answer
How to deal with the abnormal samples from TCGA found in a PCA?
R next-gen rna-seq written 7 hours ago by lykosherdshep • 0
0
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0
answers
32
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0
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Question: How do I view data in pymol via Ipymol for visualisation in a Jupyter notebook?
pymol jupyter idle python written 6 hours ago by M.O.L.S • 10
0
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0
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37
views
0
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(Closed) Why Pcr need for Dna sequencing?
genome assembly sequencing written 8 hours ago by 9521ljh • 10
0
votes
0
answers
79
views
0
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How to evaluate sequence alignment (e.g. number of indels) of ONT data after data preprocessing
alignment next-gen sequencing written 18 days ago by BCArg • 60 • updated 9 hours ago by Biostar ♦♦ 20
0
votes
0
answers
63
views
0
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aligning multiple files to the same genome using star
rna-seq written 14 hours ago by m.kamal • 0 • updated 11 hours ago by genomax ♦ 69k
4
votes
1
answer
3.0k
views
5 follow
1
answer
Get DrugBank data with Python
python drugbank written 2.3 years ago by Jack • 80 • updated 11 hours ago by mohfcis • 20
3
votes
2
answers
656
views
2
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How to extract specific columns from Drugbank xml file
xml drugbank written 9 months ago by vasilislenis • 100 • updated 11 hours ago by mohfcis • 20
0
votes
1
answer
179
views
1
answer
Explanation for kmer enrichment after skewer trimming of the RNA-seq reads
skewer kmer fastqc written 5 months ago by tobytaogf • 0 • updated 12 hours ago by hongshan.jiang • 0
0
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1
answer
2.8k
views
1
answer
Xenome Star Aligner
rnaseq written 5.3 years ago by lkmklsmn • 890 • updated 15 hours ago by Biostar ♦♦ 20
0
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0
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46
views
0
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Identifying the name of the cluster in DAVID
gene R rna-seq written 16 hours ago by babasaraki • 0
1
vote
0
answers
50
views
0
answers
Too many fails converting gene SYMBOL to ENTREZID
geo microarray clusterprofiler written 4 days ago by MatthewP • 190
0
votes
0
answers
51
views
0
answers
Network analysis with microarray data
gene written 19 hours ago by lalithabhuvan • 0 • updated 18 hours ago by RamRS ♦ 22k
0
votes
1
answer
64
views
1
answer
Merge DEseq and Cufflinks outputs
cufflinks degs deseq rna-seq written 1 day ago by Lissa Cruz Saavedra • 0 • updated 19 hours ago by Kevin Blighe ♦ 45k
2
votes
1
answer
3.1k
views
10 follow
1
answer
Ncbi-Blast+ Version 2.2.23 'Make' Error
blast error repeatmasker written 7.3 years ago by Heidi • 10 • updated 19 hours ago by abhijit.synl • 50
0
votes
1
answer
85
views
5 follow
1
answer
Differential network analysis for two treatments
R rna-seq written 5 days ago by Jon • 90 • updated 19 hours ago by Kevin Blighe ♦ 45k
0
votes
1
answer
48
views
1
answer
FANTOM5 enhancers: intepretations
fantom5 enhancers written 2 days ago by c.clarido • 50 • updated 20 hours ago by Kevin Blighe ♦ 45k
0
votes
0
answers
141
views
0
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error invoking makeblastdb
genome repeatmasker written 6 weeks ago by SeaStar • 10 • updated 21 hours ago by Biostar ♦♦ 20
0
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1
answer
77
views
1
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How to quantify positive and negative correlated genes from gene expression data?
gene R correlation gene-expression filtering written 1 day ago by Jurat Shahidin • 80
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