Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
101,788 results • Page
1 of 2036
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
4
views
Macrogenomic bin problem
metagenome
43 minutes ago by
meishun
• 0
4
votes
3
replies
1.8k
views
split vcf by individual
vcftools
vcf-subset
SNP
vcf
updated 1 hour ago by
kitobo6683
• 0 • written 3.5 years ago by
biosol
▴ 150
0
votes
0
replies
10
views
Detect Structural varirant from VCF file
VCF
Validation
Structural
Variants
Validator
1 hour ago by
its.roops
• 0
0
votes
1
reply
32
views
downloading human rRNA.fasta
rRNA
updated 1 hour ago by
ATpoint
60k • written 2 hours ago by
Sara
▴ 200
0
votes
0
replies
30
views
how to find coordinates of 5prime and 3prime utr from transcriptome data generated after cuffmerge only contains exon in gtf
transcriptome
2 hours ago by
isha.lily20
▴ 10
0
votes
1
reply
73
views
Retrieving starting/ending base cordinates and orientations of genes from TAIR using R
org.At.tair.db
R
Arabidopsis
updated 2 hours ago by
benformatics
★ 2.8k • written 18 hours ago by
ktm
• 0
667
votes
160
replies
84k
views
98 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
tutorial
News
handbook
updated 4 weeks ago by
Biostar
720 • written 5.4 years ago by
Istvan Albert
93k
1
vote
2
replies
111
views
Orthologs distances in OMA
OMA
orthologs
updated 4 hours ago by
adrian.altenhoff
▴ 1000 • written 12 hours ago by
Abel Sousa
• 0
0
votes
2
replies
53
views
Count number of times a value appear in correlation matrix
correlation
R
cor
1 hour ago by
ali
• 0
1
vote
2
replies
108
views
expand varians in a vcf file
expand
vcf
4 hours ago by
BioDH
▴ 10
0
votes
2
replies
67
views
Content of Rscript gone after updating
Rscript
2 hours ago by
Kira
• 0
0
votes
0
replies
33
views
Checking for strandedness with Infer experiment
RNA-seq
Strandedness
Infer
experiment
6 hours ago by
jamesymtang
• 0
0
votes
1
reply
106
views
Adjust Y axis scale in ggplot2
log
Y
axis
ggplot2
scale
updated 7 hours ago by
Sashu
▴ 10 • written 15 hours ago by
santiagoboccardo31
• 0
0
votes
1
reply
91
views
What BLAST+ cutoffs are used in Prokka annotation?
BLAST
Prokka
Annotation
updated 7 hours ago by
Mensur Dlakic
★ 18k • written 10 hours ago by
braun_tube
▴ 30
1
vote
1
reply
126
views
compare two sequences of a csv file
python
updated 9 hours ago by
Jeremy
▴ 110 • written 12 hours ago by
Debut
▴ 20
1
vote
1
reply
92
views
bcftools error on freebayes vcfs
freebayes
merge
vcf
bcftools
updated 12 hours ago by
iraun
★ 4.3k • written 13 hours ago by
mark.rose
▴ 50
0
votes
1
reply
54
views
Extract the mRNA sequences of all the orthologs of a eukaryotic gene
eukaryotic
mammal
alignment
ortholog
sequence
updated 1 hour ago by
manaswwm
▴ 250 • written 13 hours ago by
khorms
▴ 210
0
votes
0
replies
44
views
Passing priors to GATK's GenotypeGVCFs
GATK
frequency
site
genotyping
joint
spectrum
13 hours ago by
Emma
• 0
0
votes
1
reply
56
views
How to count mapping rates for ChIP-seq?
Chip-seq
mapping
reads
updated 2 hours ago by
Ian
5.8k • written 13 hours ago by
baijiangshan9726
• 0
2
votes
3
replies
5.0k
views
STAR alignment error: Genome_genomeGenerate.cpp:208:genomeGenerate: exiting because of *OUTPUT FILE* error: could not create output file ./GenomeDir/
RNA-Seq
STAR
updated 14 hours ago by
xsmailstop-sub
• 0 • written 3.9 years ago by
salamandra
▴ 450
0
votes
0
replies
55
views
Cannot map some GENEID to SEQNAME from EnsDb.Hsapiens.v86 database
annotation
cellranger
14 hours ago by
tien
• 0
0
votes
2
replies
124
views
stat analysis
statistics
11 hours ago by
Rob
▴ 120
1
vote
1
reply
84
views
Copy Number Variations in Whole Exome Sequencing
WES
CNV
galaxy
germline
updated 15 hours ago by
Pierre Lindenbaum
144k • written 17 hours ago by
victorrg
• 0
0
votes
1
reply
80
views
Job:
Post-Doc in Plant Genomics
Resistance
Assembly
Weeds
Post-Doc
Annotation
updated 15 hours ago by
Ram
36k • written 16 hours ago by
Eric
• 0
0
votes
2
replies
119
views
Why some primers in 'graphical view of primers' in the NCBI are represented as thicker lines?
NCBI
pick-PRIMERS
15 hours ago by
Gerardo
• 0
1
vote
5
replies
159
views
"NaN " values are copied instead of float values (pd dataframe to adata.obs)
pandas
anndata
9 hours ago by
akilabioinfo
▴ 10
0
votes
1
reply
104
views
Obtain equivalent variant ids (chr-pos-ref-alt) for GRCh37 and GRCh38
id
liftover
variant
updated 12 hours ago by
iraun
★ 4.3k • written 17 hours ago by
fla28
• 0
0
votes
0
replies
67
views
Core/pan genome pipeline
pangenome
coregenome
mtdna
ngs
Nanopore
18 hours ago by
schulpen_91
• 0
0
votes
0
replies
50
views
Change parameter for unique genes in roary pangenome reconstruction from default values
roary
18 hours ago by
Priya
▴ 20
0
votes
4
replies
156
views
Problem with BWA MEM
alignment
3 hours ago by
sihak
• 0
0
votes
3
replies
152
views
Strandedness of RNA-seq results
dual-RNA-seq
featurecounts
strandedness
HISAT2
7 hours ago by
jamesymtang
• 0
3
votes
7
replies
185
views
Difference in total gene counts between samples
rna-seq
updated 2 hours ago by
ATpoint
60k • written 20 hours ago by
bart
▴ 20
1
vote
4
replies
171
views
snakemake error - one of the commands exited with non-zero exit code
blastp
snakemake
updated 16 hours ago by
dariober
13k • written 23 hours ago by
Jonathan Yoou
▴ 50
25
votes
19
replies
5.8k
views
10 follow
Tool:
pathfindR - Enrichment Analysis using Active Subnetworks
enrichment
pathway
active
subnetwork
R
Tool
updated 21 hours ago by
Deepblue
▴ 10 • written 4.2 years ago by
egeulgen
★ 1.2k
0
votes
4
replies
266
views
How can I download from NCBI site assembly for specific genes involve in mRNA processing?
NCBI
download
assembly
21 hours ago by
dshdixit
▴ 10
1
vote
3
replies
101
views
ACGT101-miR program
sequenced
Adapter
trimming
miRNA
bioinformatics
data
updated 21 hours ago by
Michael Dondrup
51k • written 21 hours ago by
mahla.krishan
• 0
0
votes
1
reply
105
views
data correaltion
correlation
deseq2
prediction
R
target
updated 21 hours ago by
Michael Dondrup
51k • written 22 hours ago by
roniozagam94
• 0
4
votes
0
replies
113
views
Herald:
The Biostar Herald for Monday, May 16, 2022
herald
23 hours ago by
Biostar
720
0
votes
0
replies
78
views
Job:
Postdoctoral Fellowship Opening in Alzheimers Disease Genetics
Alzheimers
Postdoctoral
Genetics
Fellowship
23 hours ago by
vanessa
▴ 10
0
votes
7
replies
318
views
Basic python loop for paired fastq files
python
loop
updated 14 hours ago by
Ram
36k • written 4 days ago by
rescueson
• 0
3
votes
4
replies
148
views
Why divide by the root n when constructing the u statistic
statictic
t-test
u-test
t
offtopic
4 hours ago by
a661881
▴ 30
2
votes
6
replies
118
views
Saving file as .vcf
VCF
format
sequencing
files
Variant
call
NGS
data
updated 18 hours ago by
Ram
36k • written 1 day ago by
Maryam
• 0
0
votes
2
replies
201
views
Enrichment analysis and GSEA
GSEA
EnrichmentAnalysis
updated 1 day ago by
Mohammad Rezaei
▴ 20 • written 1 day ago by
amrsalaheldin50
• 0
3
votes
16
replies
6.8k
views
featureCounts: 0% successfully assigned fragments on multiple PE .BAM files
featureCounts
Rsubread
updated 1 day ago by
KMS
• 0 • written 3.7 years ago by
imesi
▴ 20
0
votes
3
replies
158
views
VEP Could not get current species list - using predefined list instead
Ensembl
VEP
updated 19 hours ago by
Ben_Ensembl
★ 2.0k • written 1 day ago by
Filago
▴ 90
0
votes
0
replies
71
views
Update column on selectInput in DT data table Shiny
shinywidgets
R
RShiny
1 day ago by
abseq
• 0
0
votes
1
reply
100
views
How to Extract Values for SNPs by each chromosome and position using --window
plink
updated 23 hours ago by
Pierre Lindenbaum
144k • written 1 day ago by
Raju
• 0
1
vote
5
replies
264
views
How to convert strand specific RNASEQ bam to bigwig
bamcoverage
RNASEQ
STrand
specific
updated 23 hours ago by
Carlo Yague
8.1k • written 4 days ago by
a.bafna
• 0
0
votes
0
replies
62
views
DBD::mysql required for VEP installation?
VEP
Perl
1 day ago by
Filago
▴ 90
4
votes
2
replies
164
views
Question about a public scRNA dataset(single end)?
publicdataset
scRNA
singlecell
1 day ago by
soda
▴ 40
101,788 results • Page
1 of 2036
Recent Votes
The Biostar Herald for Monday, May 16, 2022
The Biostar Handbook. A bioinformatics e-book for beginners.
Answer: How to combine 2 incomplete GTF
How to combine 2 incomplete GTF
Paired end reads merged to single end for mapping - should i allow multi-overlap similar to paired end reads?
Comment: Difference in total gene counts between samples
Comment: ORFfinder length filter
Recent Locations •
All
Sweden,
1 minute ago
India,
1 minute ago
India,
2 minutes ago
South Korea,
3 minutes ago
South Korea,
4 minutes ago
France,
4 minutes ago
National University of Ireland, Galway,
4 minutes ago
Recent Awards •
All
Commentator
to
Devon Ryan
101k
Popular Question
to
dare_devil
★ 1.5k
Popular Question
to
lakhujanivijay
5.6k
Popular Question
to
Ian
5.8k
Popular Question
to
CY
▴ 640
Popular Question
to
gtasource
▴ 60
Popular Question
to
BioDH
▴ 10
Recent Replies
Comment: can i take promoter upstream 2kb from tss ?
by
dthorbur
▴ 160
Just a quick update since I was looking for *D. melanogaster* core promoters today, I came across the Eukaryotic Promoter Database which ha…
Answer: split vcf by individual
by
kitobo6683
• 0
To split large VCF files into smaller parts is a bit tricky task because with the manual process there are chances of data loss and the pro…
Comment: Extract the mRNA sequences of all the orthologs of a eukaryotic gene
by
manaswwm
▴ 250
If I understand your question correctly - you have a reference gene (mRNA sequence) and you want to perform alignments of this gene across …
Comment: Count number of times a value appear in correlation matrix
by
ali
• 0
`cor.matrix` was generated by the function `cor(t(data))` where data has genes as rows and samples as columns. And below is the output of s…
Comment: gatk error: reference file does not exist
by
parinv
▴ 40
thank you. This helped in solving the error.
Comment: Normalization of RNASeq counts with a reference gene (/genes)
by
fracarb8
▴ 760
The scaling step is used because in Oncoland your have multiple datasets, and you want to be able to compare them together. By scaling, you…
Answer: downloading human rRNA.fasta
by
ATpoint
60k
https://www.gencodegenes.org/human/ Take the `Transcript sequence` fasta file and extract whatever you need. You could `grep` for `rRNA`…
Comment: How to count mapping rates for ChIP-seq?
by
Ian
5.8k
Hello. What did you use to map the reads? I use Bowtie2, the log file of which gives useful information.
Comment: how to delete a file 3 months after downloading it in python
by
ATpoint
60k
Please do not delete posts that users commented on and invested effort into. Just leave it as is. It may serve as knowledge repository to o…
Comment: Difference in total gene counts between samples
by
ATpoint
60k
Usually one uses the variable genes, like using `rowVars()` on the output of the DESeq2 vst transformation, and then sort it decreasingly, …
Comment: Content of Rscript gone after updating
by
Kira
• 0
ok, thank you.
Answer: Retrieving starting/ending base cordinates and orientations of genes from TAIR u
by
benformatics
★ 2.8k
**I suggest you [Read The Full Manual][1]...** Search for 'CHRLOC' and you should be well on your way. [1]: https://bioconductor.org…
Comment: Content of Rscript gone after updating
by
fracarb8
▴ 760
This question is not related to bioinformatics, you should ask the `Rstudio community` for help.
Comment: Count number of times a value appear in correlation matrix
by
Kevin Blighe
81k
Please show the output of `str(cor.matrix)`. Also, how did you produce `cor.matrix`?
Answer: Orthologs distances in OMA
by
adrian.altenhoff
▴ 1000
Dear Abel, this is the ML distance estimate for the optimal pairwise local alignment (Smith-Waterman) using the Gonnet scoring matrices.…
Traffic: 2254 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6