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Recent Replies
Comment: How to extract protein sequences from published paper
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GenoMax
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Caveat: This is likely not going to work for most papers. But if you have the right PMID then you could do the following.
$ esearch -d…
Answer: Germline variant calling pipeline using Snakemake
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Nice! A small suggestion... Instead of listing programs in the [Installation section](https://github.com/nickhir/GermlineMutationCalling#in…
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Odd click through message. It does not give any indication of what the site is about. Wonder what made them do that?
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Try running tools on only 'PASS' variants maybe then you would see a difference.
Comment: Regarding Error query
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After
"if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install(c("DESeq2", "GEOq…
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>first assemble and annotate the DNA sequences (obtained in fastaq format) of the strain
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thanks for the note, in the new release we forgot about checking spam in the RSS feeds. Looks like we do filter Latest News feeds, but not …
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@atpoint thank you very much. This was helpful.
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It is the same:
> set.seed(1)
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Ask whomever is on the manuscript that designed the constructs. This is not really a bioinformatics question and is best addressed amongst …
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Yes... Take a look into the [manual][1], It's very easy to follow
[1]: https://cnvkit.readthedocs.io/en/stable/
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thanks for your note. despite having checked the paths carefully, I must have had a typo somewhere. copying the file location into the code…
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