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2
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100
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6 follow
1
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Getting unusual characters while generating output files in a bash script
sh bash unix linux written 1 day ago by S AR • 50
18
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2
answers
14k
views
8 follow
2
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How To Distinguish Heterozygotes And Homozygotes From Variants In Vcf Format?
vcf samtools written 7.2 years ago by Shinvkuo • 130 • updated 53 minutes ago by Biostar ♦♦ 20
0
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1
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37
views
1
answer
Analyzing data from Agilent-023795 Human DNA Methylation Microarray 244k
agilent methylation 244k chip-on-chip cpg written 10 hours ago by emiliomastriani • 10 • updated 53 minutes ago by Kevin Blighe ♦ 33k
9
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4
answers
314
views
7 follow
4
answers
How to write the output in snakefile (snakemake) for bowtie2-build
bowtie2 snakemake bowtie2-build snakefile written 8 weeks ago by c.clarido • 40 • updated 1 hour ago by zorrilla • 0
1
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1
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105
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1
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htseq-count SAM Processing error "can't decode byte 0xa7"
rna-seq written 4 days ago by Glubbdrubb • 0
0
votes
1
answer
24
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1
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Dealing with a large sample for variant calling
jointcalling ngs alignment variantcalling written 2 hours ago by Mehulsharma.253 • 10 • updated 2 hours ago by Pierre Lindenbaum ♦ 115k
4
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1
answer
56
views
1
answer
FPKM quantile normalization
flux balance analysis normalization rna-seq written 3 hours ago by Maryam • 20
0
votes
0
answers
85
views
0
answers
FASTQ alignment result is really bad
htseq-count salmon rna-seq written 5 hours ago by bharata1803 • 390
0
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0
answers
28
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0
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HUMANn2 test error
humann2 functional analysis testing error written 4 hours ago by shibl_a • 10 • updated 3 hours ago by WouterDeCoster ♦ 35k
0
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0
answers
26
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0
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Combine node/branch labels from multiple trees into one
annotation label tree treegraph2 written 3 hours ago by al-ash • 70
0
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1
answer
76
views
1
answer
STAR Splice Junctions normalization
star rna-seq written 20 hours ago by Bastien Hervé • 2.7k
401
votes
17
answers
31k
views
186 follow
17
answers
News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 2.0 years ago by Istvan Albert ♦♦ 78k • updated 4 hours ago by africainterpol101 • 0
1
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1
answer
166
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1
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question about survival analysis
survival analysis;multiple test correction written 29 days ago by tujuchuanli • 30
1
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1
answer
58
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1
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dbSNP build in ENSEMBL biomaRt?
ensembl biomart dbsnp written 11 hours ago by 09meh • 0 • updated 4 hours ago by Emily_Ensembl ♦ 16k
2
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0
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64
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0
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Terrible RNA mapping result by STAR
star rna-seq written 4 hours ago by 610225668 • 0
1
vote
1
answer
40
views
1
answer
changing fasta to meg format
dnaseq megatool conversion written 6 hours ago by abhilashreddy495 • 0 • updated 5 hours ago by Michael Dondrup ♦ 45k
0
votes
1
answer
56
views
5 follow
1
answer
gffread executable file
tool rna-seq written 18 hours ago by karlaf.jara • 0 • updated 5 hours ago by kristoffer.vittingseerup • 1000
1
vote
1
answer
70
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1
answer
Merging population vcf files without gvcf
variant calling genome next-gen written 12 hours ago by Myo Naung • 10 • updated 6 hours ago by WouterDeCoster ♦ 35k
5
votes
2
answers
307
views
5 follow
2
answers
Ideas to split peaks into subpeaks - beyond PeakSplitter
peak calling wig chip-seq written 6 months ago by Sergio Martínez Cuesta • 60 • updated 6 hours ago by Biostar ♦♦ 20
32
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4
answers
1.5k
views
43 follow
4
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Tutorial: Pathway Enrichment Analysis, Clustering and Scoring with pathfindR
pathway R tutorial active subnetwork enrichment written 5 months ago by egeulgen • 580 • updated 6 hours ago by majuang66 • 80
2
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1
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499
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1
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Problem in using TCGAvisualize_meanMethylation function
R written 9 months ago by mahmood.amiri225 • 0 • updated 7 hours ago by 1303823432 • 0
1
vote
1
answer
625
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1
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Tools for Saturation analysis and gene body coverage analysis
rna-seq written 14 months ago by Javad • 30 • updated 8 hours ago by JY Nam • 20
4
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0
answers
46
views
0
answers
How to combine RNA-Seq from Novaseq separated in lanes, after fpkm have been computed?
gene next-gen rna-seq written 9 hours ago by jamespower • 30
1
vote
1
answer
55
views
1
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problem wit unzipping fastq.gz file
illumina fastq rna-seq fastq.gz written 9 hours ago by yasaman.rezvani66 • 0 • updated 9 hours ago by JY Nam • 20
0
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0
answers
35
views
0
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How to define the LD interval where a SNP locates?
genetics plink ld written 9 hours ago by Tao • 260
0
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0
answers
34
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0
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Normalizing CAZy data
genome annotation cazy fungi enzymes written 11 hours ago by msobol • 10
0
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1
answer
87
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1
answer
pybedtools intersect using additional options
pybedtools written 6 days ago by zoegward • 50
2
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1
answer
1.1k
views
1
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Genes associated with GO term
gene go written 22 months ago by mforde84 • 1.2k • updated 12 hours ago by Biostar ♦♦ 20
0
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1
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47
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1
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The correct way to build search term for high-specificity search in NCBI (nuccore)
ncbi search written 19 hours ago by chun.c.yeung • 0 • updated 13 hours ago by vkkodali • 560
0
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54
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0
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Refseq accessions - getting gene function and GO terms for each one
gene function gene ontology refseq written 13 hours ago by Biogeek • 320
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