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My VCF files are of zero length?
R next-gen alignment written 32 minutes ago by mahnoornaseer97 • 0 • updated 20 minutes ago by Pierre Lindenbaum ♦ 96k
1
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0
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330
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0
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Can we predict/quantify transcription factor activation using gene expression data?
transcription factor gene expression tf activation written 7 months ago by Diwan • 350 • updated 31 minutes ago by Biostar ♦♦ 20
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163
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13 follow
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Forum: How to apply for a job
apply cv forum application resume cover letter written 2 hours ago by Emily_Ensembl ♦ 12k
1
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0
answers
49
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0
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Dataset normalised to TPM (GSE85066)
R tpm rna-seq rstudio deg written 1 hour ago by Vania • 10
1
vote
2
answers
78
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2
answers
wrong bam file format
rna-seq written 2 hours ago by alirezamomeni707 • 0 • updated 1 hour ago by Devon Ryan ♦ 69k
3
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1
answer
64
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1
answer
correlation between genes
R written 2 hours ago by krushnach80 • 150 • updated 1 hour ago by Devon Ryan ♦ 69k
2
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3
answers
178
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3
answers
Kallisto pseudobam to IGV
alignment igv kallisto pseudobam rna-seq written 8 days ago by mac • 50 • updated 3 hours ago by Antonio R. Franco • 3.3k
0
votes
1
answer
137
views
1
answer
RNA-Seq : merged.gtf file from cuffmerge where exons are duplicated (two exons with the same coordinates and the same gene_id but without the same oId)
assembly stringtie rna-seq cuffmerge merged.gtf written 19 hours ago by JoannaF • 0 • updated 5 hours ago by Satya • 670
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3
answers
134
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6 follow
3
answers
filter DNA sequences of defined length for certain bases at exact positions
sequence written 22 hours ago by philipp.rathert • 0
3
votes
1
answer
117
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1
answer
Gene expression data set scaling
R rna-seq written 7 hours ago by krushnach80 • 150 • updated 5 hours ago by Devon Ryan ♦ 69k
0
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1
answer
70
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1
answer
DeSeq2 for time point analysis? And what is the best way to handle technical replicates
desq2 rna-seq written 9 hours ago by halo22 • 60 • updated 6 hours ago by Devon Ryan ♦ 69k
3
votes
0
answers
169
views
0
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how to adjust BAM header after extracting only mapped reads from BAM files
bam samtools written 4 weeks ago by Ric • 120 • updated 6 hours ago by Biostar ♦♦ 20
1
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0
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118
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0
answers
ATACseq with STAR and macs2
macs2 dmrs atac-seq star written 8 hours ago by Ice P • 0
274
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14
answers
12k
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115 follow
14
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 7 months ago by Istvan Albert ♦♦ 73k • updated 9 hours ago by kenanh • 10
0
votes
0
answers
77
views
0
answers
sc-WBGS library GC content, low bismark mapping rate, high CHH%
gc content methylation wgbs written 14 hours ago by Ellie • 20
3
votes
3
answers
199
views
3
answers
How to map SNPs of C. Albicans using custom data?
R snp written 11 days ago by nattzy94 • 10
0
votes
2
answers
602
views
2
answers
autoAug.pl(Augustus)-PASA pipeline error
software error genome pasa augustus written 21 months ago by freddiejung • 10 • updated 11 hours ago by wn1364 • 0
0
votes
1
answer
123
views
1
answer
SNPeff: Find SNPs that are close to exons?
exon snp written 22 days ago by Marvin • 90 • updated 12 hours ago by Biostar ♦♦ 20
24
votes
1
answer
318
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10 follow
1
answer
Forum: what is the motivation of a person for being a cancer research bioinformatician?
forum cancer research written 3 days ago by F • 2.6k • updated 13 hours ago by tokojualobatperangsang • 0
3
votes
1
answer
83
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1
answer
Parsing BAM to genome feature
annotation bam sam rna-seq written 14 hours ago by zdb • 0 • updated 13 hours ago by Devon Ryan ♦ 69k
0
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0
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101
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0
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Different length reads and How to handle?
rna-seq written 14 hours ago by t2g4free • 0
2
votes
0
answers
88
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0
answers
BWA aln vs. mem for 100bp reads
bwa written 15 hours ago by ropolocan • 270 • updated 14 hours ago by Pierre Lindenbaum ♦ 96k
0
votes
0
answers
66
views
0
answers
GSEA related to other functional analyses
rna-seq gsea goterm written 15 hours ago by sup230 • 0
4
votes
1
answer
148
views
1
answer
Does a database of pathogenic transcripts exist?
database rna-seq written 18 hours ago by user31888 • 20 • updated 15 hours ago by h.mon ♦ 7.5k
2
votes
2
answers
118
views
2
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adjusting p-value for GO analysis
gene go written 20 hours ago by milanlove • 0 • updated 16 hours ago by moushengxu • 200
4
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0
answers
119
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0
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snpEff inappropriate interpretation of variants?
software error variant calling alignment rna-seq written 18 hours ago by moushengxu • 200
1
vote
0
answers
104
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0
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Protein blastp .pin file warning
protein blast written 17 days ago by arunprasanna83 • 10 • updated 18 hours ago by Biostar ♦♦ 20
0
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0
answers
75
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0
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ABSOLUTE MAF error
maf absolute written 19 hours ago by Alejandro Jimenez Sanchez • 90
0
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0
answers
103
views
0
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Difference Between Gene Expression And Transcript Expression
kallisto rna-seq written 19 hours ago by morteza.khabiri • 0
0
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1
answer
113
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1
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Does anyone have a cheatsheet to compare Usearch and Bowtie2 performance in different situation?
usearch bowtie2 next-gen alignment written 1 day ago by m.koohi.m • 60 • updated 19 hours ago by h.mon ♦ 7.5k
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