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how to perform Kolmogorov-Smirnov statistic in GSEA in R?
R statistical analysis microarray gsea written 9 hours ago by Mo • 100
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34
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fixing the geometry of a model
protein model; model error reduction written 1 hour ago by calmvipul • 0
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2
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52
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2
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question about tophat-fusion error
rna-seq written 5 hours ago by syxbestmayer • 0
15
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1
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6 follow
1
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Latent Variable Models For Gene Expression: Any Good?
gene meta written 4.7 years ago by Mike Dewar • 1.3k • updated 3 hours ago by Biostar ♦♦ 0
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1
answer
69
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1
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Get genus specific pathways from KEGG
pathways candida written 17 hours ago by BioStarUser99 • 20 • updated 3 hours ago by Felix Francis • 110
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4
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97
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5 follow
4
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linkage disequilibrium: difference between D' and r-squared
ld r-squared written 1 day ago by wkreinen • 0 • updated 3 hours ago by Felix Francis • 110
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1
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68
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1
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Consensus for haploid genome from vcf file
next-gen written 10 hours ago by indranipoddar • 0 • updated 4 hours ago by Geek_y • 1.6k
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42
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PAML dN and dS estimates correlated with divergence time
gene paml ds dn written 4 hours ago by brubin • 0
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62
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what is the difference between reference genome sequence from UCSC and ensembl ?
reference genome written 6 hours ago by lin.pei26 • 0
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1
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535
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1
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Annotation Bed File For Phaseolus Vulgaris
bed chip-seq written 2.8 years ago by Geek_y • 1.6k • updated 9 hours ago by Biostar ♦♦ 0
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68
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0
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Intuitive explanation for Fu's Fs statistic
statistic selection population genetics written 9 hours ago by anuragm • 90
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37
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Job: Biological Software Engineer, Edinburgh Genome Foundry, University of Edinburgh
software bioinformatics job synthetic biology written 10 hours ago by fraser.morton • 0
3
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4
answers
113
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4
answers
Obtain MAF from VCF
maf vcf tabular excel written 17 hours ago by ginlucks • 10 • updated 10 hours ago by Cyriac Kandoth • 2.8k
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51
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Error in loading R package "GO.db" in installing WGCNA R package
R written 11 hours ago by zaynabmousavian • 0
17
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901
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20 follow
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Tutorial: Exploring cancer mutation data portals
data portal icgc cancer tutorial tcga mutation written 9 months ago by Malachi Griffith ♦ 9.4k
1
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1
answer
61
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1
answer
N datasets using DiscoSNP++
discosnp referencefreesnpcall tool written 13 hours ago by ayang • 0 • updated 12 hours ago by pierre.peterlongo • 250
2
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1
answer
95
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1
answer
R code to calculate total number of bp from gene range
R written 13 hours ago by M K • 100 • updated 12 hours ago by Devon Ryan ♦ 28k
0
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1
answer
81
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5 follow
1
answer
bcl2fasta writing file in read only directory
bcl2fasta written 17 hours ago by alex • 90 • updated 13 hours ago by coldrecd • 0
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2
answers
117
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2
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Disable "NM_xxxx" lable from NCBI geneview
ncbi geneview written 6 days ago by kindlychung • 0 • updated 13 hours ago by Kim • 50
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3
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1.9k
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5 follow
3
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Is There A Way To Run Fastqc On All The Fastq Files In The Different Directories With Just One Command?
pipeline fastqc written 15 months ago by Frymor • 770 • updated 13 hours ago by zerbeb • 0
1
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1
answer
80
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1
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epigenetic database for immuncells
chip-seq written 15 hours ago by tonja.rand • 40 • updated 14 hours ago by Friederike • 10
1
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56
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0
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PASA(Program to Assemble Spliced Alignment) annotation questions
assembly pasa alignment igb rna-seq written 14 hours ago by Reema Singh • 10
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90
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What are the output values for PICNIC when called from the binary build?
copy-number picnic snp written 21 days ago by David Quigley ♦ 9.4k
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116
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What distance metric to use for fragments of genes, like 16S rRNA, or DNA fragments?
sequence next-gen sequencing written 1 day ago by vmirjalily • 0
6
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161
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News: Announcing new Bioinformatics Workshops in NYC: Apr 27 - May 3, 2015
bioinformatics news workshop written 21 days ago by Obi Griffith ♦ 9.4k
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67
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[DESeq2] Correct use of results() function in time series analysis
deseq2 rna-seq written 17 hours ago by john • 10
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230
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0
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How to generate FPKM values for Velvet/Oases assembled transcripts
fpkm velvet/oases rna-seq written 27 days ago by upendrakumar.devisetty • 290 • updated 15 hours ago by Biostar ♦♦ 0
1
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1
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66
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1
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"Error:Could not open map file: --out" in vcftools
next-gen snp sequencing written 16 hours ago by Anop Singh Ranawat • 0 • updated 15 hours ago by Alex Reynolds ♦ 9.4k
0
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57
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Error with Quake in step "3. Correct reads" with the C++ program "correct"
software error assembly quake boost correct reads written 15 hours ago by alecloic • 20
4
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1
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89
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1
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[NOISeq] Error in noiseqbio - filter out low counts
R low counts noiseq rna-seq rpkm written 1 day ago by gustavoborin01 • 10 • updated 15 hours ago by komal.rathi • 1.7k
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66
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1
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fqtrim minimum read length default value
rna-seq written 16 hours ago by hana • 30 • updated 15 hours ago by Geek_y • 1.6k
6
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0
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708
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5 follow
0
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Mirna Target Prediction
utr mirna target written 2.8 years ago by Janake • 160 • updated 16 hours ago by julierey52 • 0
3
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0
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96
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0
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What is the best way to transfer HiSeq data from the instrument to compute resources and/or storage?
sequencing next-gen hiseq written 16 hours ago by Keith Callenberg • 490
1
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75
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How to create protein-protein interaction network for specific genes (5000 genes) using biogrid?
cytoscape biogrid protein-protein interaction written 17 hours ago by vahid • 0
0
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0
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60
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DESeq2 - Normalisation factors
deseq2 rna-seq normalisation written 17 hours ago by alesssia • 50
1
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1
answer
74
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1
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Augustus result interpretation
genome gene sequence sequencing written 1 day ago by bioinformaticssrm2011 • 0
3
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1
answer
88
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1
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Determining genome build in dbSNP restults
dbsnp genome builds snp entrez written 1 day ago by sbrown8 • 20 • updated 19 hours ago by Sean Davis ♦ 17k
51
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10
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13k
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14 follow
10
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How To Split A Multiple Fasta
fasta split written 4.5 years ago by Gvj • 410 • updated 19 hours ago by new • 20
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62
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Negative beta coefficient (genetic risk score weights) - reversing allele coding
beta coefficient genetic risk score snp written 19 hours ago by Juliana • 10
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2
answers
113
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2
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Help obtaining splice site data from dbSNP!
dbsnp coordinates genomic splice sites splice written 22 hours ago by parthdineshp • 10
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