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Recent Replies
Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
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If 1kgtot.bim contains doubled IDs (e.g. "HG00096 HG00096", you need to provide a doubled ID to `--indv`. The log file shows that your scr…
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Just in case anyone faces this problem in the future, here is the link for the updated `estimate package` on github:
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> Is there a way to tell blast to output the unmapped reads into a
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those are two distinct commands https://linux.die.net/man/1/comm and https://linux.die.net/man/1/join
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Thanks for answering :),
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have a look at `comm` or `join`.
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Sorry I forgot to mention I used it in this loop, which worked with another plink file, but not with this 1KG file.
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`--indv` takes a single ID, not a filename. So `--indv IDlist.txt` shouldn't work.
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Thank you. Do you know of any strategies for non-coordinated-sorted bam files?
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@rpolicastro gave you several helpful links for using the h5ad file, in addition to how to explore and plot data. The links in my answer al…
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I was able to run the --indv command successfully on a file with a bed file by simply listing the IDs in single column.
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