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Comment: Retrieving information from boxplots in R
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You should probably run differential expression analysis with your whole dataset. See the [edgeR](https://bioconductor.org/packages/release…
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why not contact the authors? Could be better to ask them if they can run your sequences and share the results.
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How are you generating your count matrix? Seems you are counting reads mapped >1 time.
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Please post this as a separate question, I'm sure people will be happy to help, but hijacking this post is not the way to go about this.
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Hi Nagai,
This works for me.
Thank you!
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I've tried plotting this and it works very well. However I have a question: If you had 200 genes that you would like to compare between the…
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While the above is valid in theory, in practice, and depending on the situation, I think the values ought to be corrected for multiple comp…
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The genome annotation for *Branchiostoma lanceolatum* is in Ensembl Metazoa: https://metazoa.ensembl.org/Branchiostoma_lanceolatum/Info/Ind…
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Great tips. I think one of this will give me what I am looking for. Thanks a bunch
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The probability is a number between 0 and 1, so by definition it cannot be 2^30.
However, I think you were close.
First of all: I assume …
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While I have done this before, I am trying to use the GO to perform functional analysis to determine like biological function, with a tool …
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I still don't fully understand the issue with IGV. I seem to recall that I simply loaded my WGBS samples with other samples without giving …
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Once upon a time, one could simply download a blast-database (or so I remember, maybe a fasta file) and then we could simply blast vs. GO. …
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Get the sequence for your gene, find the most similar annotated genes (from other, annotated organisms) then evaluate whether the similarit…
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I would write a Python program (this one uses BioPython) of the sorts:
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