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Comment: Excluding sequences from fasta based on a id list - faSomeRecords not working
by
GenoMax
112k
> but it is not working
Just saying this does not help you or us. We have shown you that the program works as expected. You are able to ge…
Comment: Excluding sequences from fasta based on a id list - faSomeRecords not working
by
roberta.cracco
•
0
Actually, if any of you could help me with solutions for faSomeRecords, I would be appreciate.
I downloaded the linux version for my ma…
Comment: How to get gene lengths ?
by
GenoMax
112k
Past thread that may be useful:
https://www.biostars.org/p/456800/<br>
Comment: Excluding sequences from fasta based on a id list - faSomeRecords not working
by
roberta.cracco
•
0
Thank you for your input!! how could i use it without faSomeRecords? im not being able to make mine run, I have already tried several solut…
Comment: Terminal says killed while running HUMAnN
by
anjalivasudevan98
▴
10
Ohh, okay. Thanks for the response.
Comment: Terminal says killed while running HUMAnN
by
andres.firrincieli
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I do not think you can run HUMAnN on a virtual machine unless you have a computer with at least 32 GB of RAM; HUMAnN 2.0 requires >= 16 GB …
Comment: number of exons
by
cpad0112
18k
$ awk '$3=="exon" && $2 == "BestRefSeq" {print}' GRCh38_latest_genomic.gtf| gffread -F --keep-exon-attrs --table "gene_id","transcript…
Comment: Align bacterial contigs to a reference genome and visualize the alignment.
by
rikki.frederiksen
▴
10
Thanks a lot Hugo,
I will install miniconda right away, and post the logs if my attempts fail.
Best.
Comment: Using WGCNA on Normalized Nanostring dataset
by
andres.firrincieli
★
2.1k
If properly normalized and `log2 transformed` WGCNA can be applied to different kind of data: amplicon sequencing, metabolomic, proteomic, …
Answer: Does it necessary to use both forward and reverse fastq input files in kmergnie?
by
liorglic
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570
In k-mer analyses (including KmerGenie), paired-end information is not used, so you can just use all your files - order doesn't matter. You…
Comment: number of exons
by
cpad0112
18k
$ datamash -sg13 max 9 < wgEncodeGencodeBasicV19.txt | head -20
5S_rRNA 1
7SK 3
A1BG 8
A1BG-AS1 4
A1CF 15
…
Answer: How extract a specific part of sequence from a gtf file?
by
liorglic
▴
570
[gffread][1] from the Stringtie package also has this functionality.
[1]: https://github.com/gpertea/gffread
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by
fracarb8
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I recently worked on a dataset of progenitors T cells, and I started playing with [STEMNET][1]. It is a dimensionality reduction algorithm …
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