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14
votes
0
answers
2.5k
views
9 follow
0
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Tutorial: Machine Learning For Cancer Classification - Part 4 - Plotting A Kaplan-Meier Curve For Survival Analysis
R tutorial written 15 months ago by Nicholas Spies • 280 • updated just now by Obi Griffith ♦ 9.5k
1
vote
0
answers
22
views
0
answers
Forum: PacBio Library Prep workshop and PacBio SMART-Portal bootcamp - UC Davis - April 2015
genome assembly forum pacbio sequencing written 3 hours ago by DNATECH • 10
0
votes
0
answers
71
views
0
answers
OMA-browser, the manual script failure
orthologs oma written 6 hours ago by natasha.sernova • 20 • updated 4 hours ago by Ram ♦ 4.2k
1
vote
1
answer
69
views
1
answer
biomaRt duplicates some unique IDs during getSequence() query but not others
R biomart bioconductor mgi written 4 hours ago by eromasko • 10 • updated 4 hours ago by Ram ♦ 4.2k
1
vote
0
answers
62
views
0
answers
Comparing Genotypes from NA12878 to that of her parents (NA12891 and NA12892)
genome next-gen snp written 4 hours ago by sichan • 10
16
votes
4
answers
5.6k
views
8 follow
4
answers
Computing The Reverse And Complement Of A Sequence With Biopython
python sequence biopython written 5.0 years ago by Biostar User • 830 • updated 5 hours ago by Biostar ♦♦ 0
79
votes
13
answers
4.0k
views
21 follow
13
answers
Are There Websites Which Allow Users To Post Comments On Peer-Reviewed Articles?
written 5.0 years ago by Jeremy Leipzig ♦ 14k • updated 5 hours ago by theoriste • 10
9
votes
0
answers
1.4k
views
0
answers
Tutorial: Machine Learning For Cancer Classification - Part 3 - Predicting With A Random Forest Classifier
tutorial classification written 15 months ago by Obi Griffith ♦ 9.5k
14
votes
0
answers
6.1k
views
0
answers
Tutorial: Machine Learning For Cancer Classification - Part 2 - Building A Random Forest Classifier
R tutorial classification cancer written 15 months ago by Nicholas Spies • 280 • updated 5 hours ago by Obi Griffith ♦ 9.5k
0
votes
1
answer
88
views
1
answer
Obtain conservation (or % ident) in a multiple sequence alignment
python alignment written 18 hours ago by Biojl • 1.2k • updated 6 hours ago by Felix Francis • 120
2
votes
1
answer
104
views
1
answer
I wonder difference among the gene database
gene db refseq ensembl ucsc written 1 day ago by science0530 • 10 • updated 6 hours ago by Felix Francis • 120
1
vote
7
answers
86
views
7
answers
Optimizing De Novo Transcriptome assemblies for non model organisms
assembly rna-seq written 13 hours ago by giorgiocasaburi • 0
0
votes
1
answer
75
views
1
answer
Using transcripts per million (TPM)
deseq2 tpm rna-seq written 19 hours ago by Tom Harrop • 0 • updated 7 hours ago by karl.stamm • 960
0
votes
2
answers
145
views
2
answers
miRNA target prediction tools
mirna mirna target prediction virus genome virus written 18 hours ago by shzad • 0 • updated 7 hours ago by Vivek Todur • 20
64
votes
4
answers
11k
views
35 follow
4
answers
Tutorial: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas)
cancer tutorial tcga maf music mutation written 22 months ago by Cyriac Kandoth • 2.8k
16
votes
2
answers
510
views
12 follow
2
answers
Forum: Announcing the Canadian Bioinformatics Workshops 2015 series
bioinformatics cbw forum workshop written 8 weeks ago by Obi Griffith ♦ 9.5k
0
votes
1
answer
62
views
1
answer
Genetic Map in HapMap based on which population?
snps recombination written 11 hours ago by JM88 • 70 • updated 9 hours ago by Zev.Kronenberg ♦ 8.9k
0
votes
1
answer
92
views
1
answer
identify novel miRNA and lincRNA from mRNA
rna-seq written 10 hours ago by hana • 30 • updated 9 hours ago by andrew • 100
1
vote
3
answers
95
views
3
answers
compare and trim fasta files by header ID
fasta bioperl biopython written 10 hours ago by joie.cannon • 0 • updated 10 hours ago by 5heikki • 1.8k
0
votes
0
answers
71
views
0
answers
GERMLINE software segfault error
segfault germline ibd written 10 hours ago by kiminsigne • 0
2
votes
1
answer
63
views
1
answer
How to import fasta file by using perl DBI.?
perl database dbi written 18 hours ago by SSV • 10 • updated 10 hours ago by Jean-Karim Heriche • 720
2
votes
2
answers
134
views
5 follow
2
answers
interpretation of RNA secondary structure
rna-seq written 19 hours ago by fareehakanwal90 • 20 • updated 10 hours ago by Ryan Dale ♦ 2.9k
1
vote
1
answer
106
views
1
answer
New to Python. Need help writing a program comparing 2 DNA sequences.
python written 12 hours ago by Tdemarco • 0
0
votes
0
answers
277
views
0
answers
Making a circos plot to show expression for a gene set rather than whole genome
omiccircos gene set written 7 weeks ago by Peter.Wood • 0 • updated 11 hours ago by Biostar ♦♦ 0
0
votes
0
answers
57
views
0
answers
Download unspliced RefSeq genes
gene release grch38 refseq written 11 hours ago by Noolean • 1.9k
3
votes
1
answer
84
views
1
answer
PASA(Program to Assemble Spliced Alignment) annotation questions
assembly pasa alignment igb rna-seq written 2 days ago by Reema Singh • 30
0
votes
1
answer
64
views
1
answer
corresponding gene names for probeIDs
gene names microarray written 12 hours ago by nazaninhoseinkhan • 30 • updated 12 hours ago by Manvendra Singh • 1.3k
0
votes
1
answer
73
views
1
answer
How to let the galaxy local instance run (eg. tophat) @ multi-thread mode?
galaxy local instance written 1 day ago by goohongzi • 0 • updated 12 hours ago by Noolean • 1.9k
0
votes
1
answer
156
views
1
answer
How to get GQ after running BCFTools?
snp sequencing written 8 weeks ago by Tails • 0 • updated 12 hours ago by timothee.cezard • 0
0
votes
1
answer
35
views
1
answer
Tool: rnastar in galaxy
alignment tool written 15 hours ago by b.roux • 0 • updated 13 hours ago by Noolean • 1.9k
2
votes
1
answer
66
views
1
answer
memory usage and run time for VEP whole genome variant annotation?
genome ensembl vep snp written 15 hours ago by vmmorozov • 0 • updated 14 hours ago by EnsemblWill • 140
11
votes
3
answers
187
views
3
answers
Why are there multiple RefSeq sequences occurring with the same name?
htsjdk clinvar refseq download ucsc written 11 days ago by gresserT • 20
0
votes
0
answers
75
views
0
answers
Where to download GWAS datasets
snp written 15 hours ago by iwprost • 0
0
votes
0
answers
66
views
0
answers
Get CDS from WGS fasta OR download just CDS
ncbi ftp genome cds data written 15 hours ago by moranr • 50
0
votes
1
answer
109
views
1
answer
can somebody help me confirm what the interpretome chromosome painting is showing?
genome ancestry interpretome written 2 days ago by CJ1994 • 0
2
votes
0
answers
102
views
0
answers
[DESeq2] time series analysis. Linear and squared model
deseq2 rna-seq written 2 days ago by john • 10
8
votes
0
answers
612
views
0
answers
News: New versions of Minia and DSK (2.0.x)
assembly news minia gatb dsk written 29 days ago by Rayan Chikhi • 670
19
votes
1
answer
633
views
18 follow
1
answer
Tool: list of dockerized bioinformatics apps
forum docker tool written 4 months ago by 14134125465346445 • 2.4k
2
votes
1
answer
307
views
1
answer
Assessing significance of protein binding data inside defined genomic intervals
genome protein binding chip-seq statistics written 6 months ago by Sakti • 200 • updated 17 hours ago by Biostar ♦♦ 0
1
vote
0
answers
231
views
0
answers
Which algorithm and stand-alone tool is good for searching short nt motif (30-60bp) against long sequences (300-500bp)?
alignment blast written 17 hours ago by Dev • 10
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