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Combine many RSEM TPM outputs to single matrix
rsem rsem-generate-data-matrix rna-seq written 21 minutes ago by abbe.r.clark • 0
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1
answer
10
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1
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tumorfusions.org is down
fusions written 28 minutes ago by anoopgrewal • 0
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1
answer
10
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1
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Converting a single line fasta transcriptome [no space between sequence and name] to conventional fasta format
genome fasta next-gen sequence rna-seq written 43 minutes ago by Roelof • 10 • updated 36 minutes ago by Pierre Lindenbaum ♦ 112k
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Job: Postdoc @ Mount Sinai School of Medicine (New York City): Epigenomics and Transcriptomics of Human Diseases
next-gen chip-seq job rna-seq written 53 minutes ago by fanggang • 50
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Job: Postdoc @ Mount Sinai School of Medicine (New York City): Microbiome and Human Diseases
microbiome metagenomics metagenome long reads job written 29 days ago by fanggang • 50
3
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1
answer
154
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1
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Can I put FF and FFPE samples together for RNA-seq data analysis
design covariate rna-seq written 13 days ago by qxiong1 • 0 • updated 1 hour ago by ATpoint ♦ 7.6k
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1
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48
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1
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RNA-Seq for FFPE samples
rna-seq written 19 hours ago by wbliu • 0 • updated 1 hour ago by Charles Warden ♦ 5.3k
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10
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Performing GSEA using MSigDB gene sets in R
msigdb R gsea written 1 hour ago by wilsonav • 0
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2
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974
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10 follow
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Tool: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, venn diagram, you name it.
venn diagram tool R rna-seq gene pca written 4 months ago by Jennifer Pham • 180 • updated 1 hour ago by anne.bros • 30
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2
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Pipeline for trusight RNA fusion kit
rna-seq written 22 hours ago by sacha • 1.5k • updated 1 hour ago by Charles Warden ♦ 5.3k
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13
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What does BLAST command line - gilist option refer to?
ncbi gi blast number written 1 hour ago by yarmda • 0
2
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1
answer
62
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How to get genes that make up principal components
R deseq2 rna-seq written 3 hours ago by h-patrick • 10 • updated 2 hours ago by Kevin Blighe ♦ 28k
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38
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Gene set enrichment analysis with edgeR output
R edger genesetenrichment gsea rna-seq written 3 hours ago by Biologist • 80 • updated 2 hours ago by zx8754 ♦ 5.0k
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News: UniProtKB: Standardization of 'Catalytic activity' annotations
news uniprot written 3 hours ago by Elisabeth Gasteiger • 1.5k
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1
answer
87
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5 follow
1
answer
Alignment with bowtie2 but empty .fastq files
assembly rna-seq written 4 hours ago by luzglongoria • 0 • updated 3 hours ago by ATpoint ♦ 7.6k
4
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2
answers
64
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2
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Error while running gatk
sequence next-gen alignment snp written 5 hours ago by ashaneev07 • 0 • updated 4 hours ago by h.mon ♦ 19k
374
votes
19
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28k
views
171 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 21 months ago by Istvan Albert ♦♦ 77k • updated 4 hours ago by RamRS ♦ 17k
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2
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83
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5 follow
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Install Haploview on Ubuntu
ubuntu manhattan snp haploview written 7 hours ago by lubegaritah • 10
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53
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Adding annotation into a transcript in order to use TopHat2
rna-seq written 4 hours ago by mlopez • 0
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2
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2.6k
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2
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How to download reference transcriptome file of species ?
genome assembly rna-seq written 4.1 years ago by jack • 720 • updated 4 hours ago by Pitágoras Alves • 0
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1
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114
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1
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GATK 4 GenomeAnalysisTK still available? (Unable to access jarfile)
versions gatk genomeanalysistk written 1 day ago by marongiu.luigi • 310
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71
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Tool to predict perturbation in biological system
cell designer mathematical model system biology written 7 hours ago by ste.lu • 20
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1
answer
744
views
1
answer
Annotation of repeatative elements
censor repeatmasker repbase written 2.0 years ago by Rahul • 30 • updated 5 hours ago by zx8754 ♦ 5.0k
6
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315
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How to evaluate the similarity of genes between two sample
differential rna-seq written 7 weeks ago by afli • 20 • updated 5 hours ago by Biostar ♦♦ 20
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2
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5 follow
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Forum: Why are people not working on gene prioritization and candidate gene selection for new experiment design?
gene prioritization forum written 1 day ago by prasadhendre • 20 • updated 5 hours ago by Michael Dondrup ♦ 44k
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4
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4
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Problem running interproscan-5.14-53.0 for protein sequences
interproscan-5.14-53.0 written 3.1 years ago by mirzagold66 • 20 • updated 6 hours ago by martinajain11 • 0
12
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2
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15k
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8 follow
2
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What Is A .Ptt File And How It Is Created?
blast written 6.7 years ago by Arun • 0 • updated 6 hours ago by Mel161803 • 0
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14
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32 follow
14
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Tool to generate proportional Venn Diagrams?
visualization written 7.4 years ago by Ryan D • 3.3k • updated 7 hours ago by zx8754 ♦ 5.0k
7
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111
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5 follow
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Sort bam file by coordinates using samtools
gene next-gen tool rna-seq sequencing written 8 hours ago by Shahzad • 10 • updated 7 hours ago by finswimmer ♦ 5.5k
1
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1
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57
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Averaging with technical and biological replicates
R next-gen deseq2 rna-seq written 9 hours ago by Duckula • 0 • updated 8 hours ago by zx8754 ♦ 5.0k
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