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I see!
I have downloaded C. elegans database from the wrong.
I didn't know some information were needed in the database for BLAST.
For fu…
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@Andreas you're a legend
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When you say that MrBayes consistently chooses the rtREV model, do you mean that `sump` at the end of run shows only rtREV with posterior p…
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Not directly relevant, but this paper: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-04263-9
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that is not the taxid but the subject title, which you seem to already be producing with `salltitles`
basically that is where
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This is an important point, which is why simple mapping approaches will fail. You need to use a mapping quality filter to rule out counting…
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If you need description of the "hit" then you do not need taxID's. It is the reason I asked you to show the fasta headers for your input fi…
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Michael's answer reminds me very much of all that time I spent annotating plant genomes a few years back. Probably the easiest approach is …
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I wolud like to get description.
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Thank you for answering @lievensterck
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If you only have `C. elegans` proteins in your database why do you need a taxID column in your blast results? taxID would be the same for e…
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Thank you for your advice.
Yes, I got it,
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Sure, you can easily run your shell scripts in Snakemake.
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