Limit : all time
all time today this week this month this year
92,492 results • Page 1 of 1850
Sort: Rank
Rank Views Votes Replies
0
votes
0
replies
5
views
Tutorial:  Event & tutorial: open software tools and AI for improving bioimaging (SLURM, containerisation)
containerisation bioimaging SLURM health
12 minutes ago by Erin Haskell | ELIXIR ▴ 420
0
votes
0
replies
5
views
  Programmatically adding hydrogen and remove water to multiple PDB files
docking pdb python structure
10 minutes ago by gundalav ▴ 330
0
votes
0
replies
12
views
  PC loading plot
SNP PCA plink
updated 33 minutes ago by 50k • written 34 minutes ago by • 0
1
vote
0
replies
22
views
  DESeq2: One or more designs for contrasts of interest
DESeq2
44 minutes ago by Mirin1357 ▴ 10
0
votes
0
replies
18
views
Tutorial:  Slurm and parallelization
slurm
1 hour ago by Juke34 ★ 5.8k
1
vote
3
replies
32
views
  Locating a single cell data set
scRNA-seq
updated 1 hour ago by 50k • written 2 hours ago by ★ 3.9k
598
votes
155
replies
67k
views
91 follow
News:  The Biostar Handbook. A bioinformatics e-book for beginners.
handbook tutorial training News
updated 7 weeks ago by 120 • written 4.5 years ago by 88k
0
votes
0
replies
22
views
  Mask a SNP before imputation
genotype bcftools impute2 mask VCF
updated 54 minutes ago by 10k • written 2 hours ago by • 0
1
vote
3
replies
38
views
  Problem with Deseq2
galaxy Deseq2 sequencing RNA-seq
updated 1 hour ago by 50k • written 2 hours ago by ▴ 40
2
votes
7
replies
1.7k
views
  Differential Gene expression between low survival and high survival samples from RNAseq
rna-seq R DEG Survival
updated 2 hours ago by • 0 • written 3.2 years ago by ▴ 60
1
vote
1
reply
88
views
  Choosing the right pathways among gene set enrichment analysis results
GSEA
updated 3 hours ago by 24k • written 6 hours ago by ▴ 10
1
vote
6
replies
218
views
  Install R package fgsea: Error in download.file
bioconductor R package fgsea
updated 1 hour ago by 50k • written 5 days ago by ▴ 210
0
votes
1
reply
54
views
  Use part of the name of the input file in the Snakemake
snakemake
updated 1 hour ago by 16k • written 6 hours ago by ▴ 20
0
votes
0
replies
62
views
Job:  Postgraduate Scholarship in Bioinformatics and Liver Cancer Genomics
NGS sequencing Cancer Single-cell scRNA-seq biopsy Liquid genomics
6 hours ago by waihungh ▴ 20
0
votes
0
replies
56
views
  Chimpanzee genome for APE113 and APE114
Chimpanzee APE113
6 hours ago by maxixian1990 • 0
0
votes
3
replies
204
views
  Using Linear Regression on Genotype and Expression data
Regression SNP Machine Learning Genotype
updated 7 hours ago by ▴ 30 • written 4 days ago by ▴ 20
1
vote
1
reply
77
views
  what is the corelation between Elastic net method and GAIA method?
genes prediction
updated 7 hours ago by 74k • written 7 hours ago by ▴ 250
1
vote
2
replies
119
views
  Getting peak (bed narrowPeak) from signals (Wig)
data ChIP-seq analysis
7 hours ago by arsala521 ▴ 10
0
votes
0
replies
60
views
  Is there a way to extract alignment score from STAR aligner bam files?
rnaseq
7 hours ago by simplitia ▴ 40
0
votes
0
replies
36
views
  Supernova 10X Genomics - estimation of gap length
gap_length_estimation 10X_Genomics genome_assembly Supernova_assembler
1 hour ago by MH85 • 0
0
votes
0
replies
30
views
  Error: SLAC of HyPhy tool Galaxy.org
hyphy galaxy slac
9 hours ago by frk • 0
0
votes
0
replies
38
views
  Physical phasing of polyploid SNPs from RNA-seq data
GATK phasing transcriptome haplotype polyploid
8 hours ago by jfaberha ▴ 10
0
votes
0
replies
34
views
  Minimum size of input genes list and number of samples for fgsea
gsea fgsea
10 hours ago by confused but trying • 0
2
votes
2
replies
105
views
  3D protein structure prediction
3D-protein-structure
updated 10 hours ago by ★ 11k • written 15 hours ago by • 0
0
votes
4
replies
192
views
  PRIDE ENSEMBL
ensembl peptides pride
11 hours ago by desptsp • 0
0
votes
5
replies
143
views
  Data visualisation, miRNA and mRNA network with pair data
mirna R network mrna
updated 2 hours ago by 10k • written 12 hours ago by • 0
3
votes
2
replies
258
views
  You can't just liftover from one build to another using only coordinates correct?
liftover
updated 13 hours ago by ▴ 10 • written 5 months ago by ▴ 570
0
votes
4
replies
127
views
  How to create a signature matrix based on a given single cell RNA-seq data
Cibersort DWLS MAST signature-matrix single-cell-RNAseq
8 hours ago by ali_karimnezhad ▴ 20
0
votes
0
replies
40
views
Job:  Product Manager for Online Bioinformatics Resources
product manager bioinformatics
13 hours ago by jyu ▴ 40
1
vote
1
reply
48
views
  Gradient Descent for gene degradation
linearRegression gradientdescent R degradation scRNA
updated 13 hours ago by 32k • written 14 hours ago by ▴ 20
2
votes
9
replies
143
views
  how to delete a file 3 months after downloading it in python
python pandas
12 hours ago by Debut ▴ 10
0
votes
0
replies
30
views
  Given a GTF or BED file of transcripts, get transcript types
gtf transcript biotypes bed
14 hours ago by Ethan • 0
1
vote
1
reply
43
views
  Control-FREEC significance
Control-FREEC KolmogorovSmirnov CNVs significance Wilcoxon
updated 14 hours ago by ★ 2.2k • written 14 hours ago by ▴ 40
2
votes
1
reply
65
views
  What is the general philosophy of softwares for searching mutations ?
software mutations bacteria genome archaea
updated 15 hours ago by 12k • written 18 hours ago by ▴ 30
4
votes
3
replies
120
views
  Interpretation of reads
interpretation scRNA-seq RNA-seq count-matrix amplification
updated 14 hours ago by ★ 2.0k • written 17 hours ago by ▴ 20
0
votes
1
reply
55
views
  Duplicate ID in plink
GWAS plink
updated 15 hours ago by ▴ 690 • written 15 hours ago by • 0
0
votes
3
replies
72
views
  Velocyto: Not found cell and umi barcode in entry of the bam file
velocyto scRNA-seq UMI RNA
updated 17 hours ago by 10k • written 17 hours ago by • 0
0
votes
0
replies
39
views
  What is Lfq intensity?
Proteomic
17 hours ago by Lital • 0
1
vote
2
replies
127
views
  LOW BUSCO Score for De novo genome assembly
illumina genome assembly reads rna-seq
updated 12 hours ago by ▴ 130 • written 1 day ago by ▴ 80
0
votes
1
reply
45
views
  hg38 coordinates for centromeric, subtelomeric and telomeric regions
hg38
updated 17 hours ago by 136k • written 18 hours ago by ▴ 20
0
votes
1
reply
37
views
  Where I can download o/e scores in gnomad files?
gnomad pLI oe
updated 17 hours ago by 33k • written 18 hours ago by • 0
0
votes
0
replies
41
views
Job:  Data stewardship Community Manager
stewardship Data data management
17 hours ago by Erin Haskell | ELIXIR ▴ 420
4
votes
5
replies
1.3k
views
  ELI5: Different methods to analyse differential expression other than limma?
RNA-Seq microarray affymetrix limma
written 5.0 years ago by ▴ 30
0
votes
0
replies
34
views
Job:  Data Stewardship - Trainer and course developer (two positions)
stewardship data training Data management
17 hours ago by Erin Haskell | ELIXIR ▴ 420
0
votes
1
reply
63
views
  how to color positive and negative correlation in Cytoscape
Cytoscape
updated 18 hours ago by • 0 • written 1 day ago by ▴ 330
0
votes
0
replies
34
views
  Analyzing differential expression of host genes in RNA-Virus infected cells?
DEG Virus RNA-seq
18 hours ago by DIG • 0
9
votes
12
replies
227
views
  Orthologs vs PFAM
ortholog pfam
updated 1 hour ago by 11k • written 19 hours ago by ▴ 50
0
votes
2
replies
112
views
  Is it correct to merge two raw CEL datasets and then perform quality control, background correction, and normalization on it?
R affymetrix qualitycontrol microarray batcheffectremoval
1 hour ago by Sib ▴ 20
0
votes
5
replies
91
views
  problem: i try to merge reads with seqprep but is not working
seqprep
updated 17 hours ago by 102k • written 19 hours ago by • 0
4
votes
4
replies
104
views
  flye assembly stuck on 'Aligning reads to the graph'
pacbio genome longread assembly flye
16 hours ago by jleehan ▴ 90
92,492 results • Page 1 of 1850
Recent Votes
Intalling Ensembl VEP in windows 10
Comment: On whether or not to normalize scRNAseq expression like qPCR
Comment: On whether or not to normalize scRNAseq expression like qPCR
Comment: Problem with Deseq2
C: fastq to fastq.gz conversion for using HISAT2
DESeq2: One or more designs for contrasts of interest
Comment: how to delete a file 3 months after downloading it in python
Recent Locations • All
Germany, just now
United Kingdom, just now
France/Nantes/Institut du Thorax - INSERM UMR1087, just now
India, 3 minutes ago
Italy, 3 minutes ago
Université Paris, Saclay, 3 minutes ago
Romania, 3 minutes ago
Recent Awards • All
Student to pixie@bioinfo ★ 1.4k
Scholar to wormball • 0
Popular Question to A ★ 3.9k
Supporter to Manuela ▴ 30
Scholar to Emily_Ensembl 22k
Scholar to Alex Reynolds 32k
Popular Question to BioinformaticsLad ▴ 170
Recent Replies
Comment: HELP! extract variants for individual sample IDs in a multisample VCF by julia.zollner • 0
Hello Ram, that is really helpful. Thank you so much. Ok, I need to familiarise myself with R as well then, makes sense. I'll persist with …
Comment: Install R package fgsea: Error in download.file by ATpoint 50k
what exactly does that do?
Comment: Locating a single cell data set by ATpoint 50k
I think the statement is clear. Email them, and if they do not reply then there is nothing you can do about it. This is why this whole "ava…
Comment: Locating a single cell data set by A ★ 3.9k
This part I found for that four patients scRNA-seq data from four patients which were previously published were kindly provided by Pro…
Answer: Locating a single cell data set by ATpoint 50k
> DATA AVAILABILITY STATEMENT. > > scRNA-seq data from four patients which were previously published were > kindly provided by Prof. Andr…
Comment: Problem with Deseq2 by ATpoint 50k
I do not think filtering is a general best practice. From the vignette: > While it is not necessary to pre-filter low count genes before r…
Comment: Problem with Deseq2 by ATpoint 50k
> every gene contains at least one zero, cannot compute log geometric means How can this be, so what kind of data is this?
Comment: Is it correct to merge two raw CEL datasets and then perform quality control, ba by Sib ▴ 20
Thanks for your answer. So what is the reason for that? For example, in background correction, the background intensities for all probs are…
Answer: Problem with Deseq2 by Antonio R. Franco ★ 4.7k
It seems that you have data with zero counts. Filter to get rid of them. DESeq2 best practices recommend a filtering of low counts reads be…
Answer: Differential Gene expression between low survival and high survival samples from by Bagher • 0
Thanks a lot Mr.Hamid Ghaedi but there was another problem : > data <- assay(luad.exp) Error in h(simpleError(msg, call)) : error…
Comment: Unexpected blastx results by langziv ▴ 20
I'm studying a Myxozoa species, and I run it's sequences against the blastn and blastx databases from the NCBI website.
Comment: How to get chromosomal position of list of RS number(GRCh38)? by yoosefyud ▴ 40
Thanks a lot Emily. Using biomart completely solved my problem.
Comment: Use part of the name of the input file in the Snakemake by cpad0112 16k
use `glob_wildcards` Example directory structure: $ tree . . ├── list.smk ├── SRR13510812_1.fastq ├── SRR13510812_2.…
Comment: For loop STAR not working by cpad0112 16k
probably, your ssh session is getting timed out. try using screen or tmux to keep the process in background. Even if it disconnects from t…
Answer: Choosing the right pathways among gene set enrichment analysis results by Jean-Karim Heriche 24k
Statistical significance doesn't mean biological relevance so one alternative approach is to rank the pathways by score and look at whether…
Traffic: 2440 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6