0
votes
1
reply
14
views
0
votes
3
replies
136
views
0
votes
0
replies
9
views
2 hours ago by
taniamahmood38
▴
20
0
votes
1
reply
75
views
0
votes
1
reply
54
views
0
votes
2
replies
38
views
2
votes
0
replies
24
views
0
votes
2
replies
101
views
updated 3 hours ago by
Wayne
★
1.4k
•
written 13 hours ago by
johnnytam100
▴
100
3
votes
13
replies
360
views
696
votes
159
replies
96k
views
99 follow
1
vote
3
replies
93
views
0
votes
0
replies
35
views
1
vote
3
replies
250
views
4 hours ago by
beausoleilmo
▴
490
0
votes
0
replies
42
views
8 hours ago by
melissachua90
▴
40
0
votes
0
replies
41
views
1
vote
0
replies
77
views
updated 8 hours ago by
Matthias Zepper
1.8k
•
written 15 hours ago by
A_heath
▴
110
0
votes
1
reply
72
views
1
vote
5
replies
132
views
updated 9 hours ago by
rpolicastro
9.9k
•
written 11 hours ago by
sukeshinik5
▴
10
2
votes
1
reply
82
views
updated 10 hours ago by
ATpoint
65k
•
written 11 hours ago by
son_of_7less
•
0
0
votes
0
replies
45
views
1
vote
3
replies
145
views
0
votes
1
reply
81
views
1
vote
0
replies
75
views
1
vote
1
reply
84
views
2
votes
1
reply
103
views
updated 13 hours ago by
ATpoint
65k
•
written 13 hours ago by
rufusek500
•
0
0
votes
0
replies
54
views
14 hours ago by
carlopecoraro2
★
2.1k
0
votes
1
reply
88
views
updated 14 hours ago by
benformatics
3.1k
•
written 1 day ago by
Megan Noonan
▴
10
4
votes
4
replies
212
views
1
vote
4
replies
185
views
0
votes
1
reply
135
views
3
votes
4
replies
4.2k
views
updated 18 hours ago by
Laura Luebbert
▴
240
•
written 8.7 years ago by
jaip217
▴
20
0
votes
0
replies
103
views
1 day ago by
george.ry
★
1.2k
2
votes
4
replies
197
views
updated 14 hours ago by
benformatics
3.1k
•
written 1 day ago by
MAPK2
▴
40
2
votes
1
reply
116
views
3
votes
1
reply
122
views
updated 1 day ago by
rpolicastro
9.9k
•
written 1 day ago by
Adrian Pelin
★
2.5k
0
votes
3
replies
142
views
0
votes
0
replies
131
views
1
vote
2
replies
120
views
0
votes
1
reply
181
views
updated 1 day ago by
sam_bee_code
•
0
•
written 7 weeks ago by
lishujin
•
0
3
votes
6
replies
212
views
updated 1 day ago by
Pierre Lindenbaum
149k
•
written 1 day ago by
ciaki
•
0
1
vote
1
reply
138
views
0
votes
0
replies
58
views
1
vote
7
replies
197
views
updated 1 day ago by
Kevin Blighe
83k
•
written 1 day ago by
asumani
▴
70
1
vote
7
replies
273
views
0
votes
0
replies
87
views
updated 1 day ago by
GenoMax
121k
•
written 1 day ago by
carlopecoraro2
★
2.1k
0
votes
1
reply
205
views
1 day ago by
kirillkirilenko.tomsk
•
0
0
votes
0
replies
69
views
1
vote
2
replies
110
views
1 day ago by
Katarina
▴
10
0
votes
1
reply
88
views
updated 1 day ago by
Dave Carlson
★
1.0k
•
written 1 day ago by
nonaddldy
▴
10
4
votes
2
replies
135
views
1 day ago by
JACKY
▴
50
Recent Votes
Recent Locations •
All
United States, just now
South Korea, 3 minutes ago
Russia, 3 minutes ago
Australia, 8 minutes ago
United States, 8 minutes ago
United States, 9 minutes ago
United States, 11 minutes ago
Recent Awards •
All
Popular Question to
skiesareforflying
▴
40
Popular Question to
gaelgarcia05
▴
280
Scholar to
beausoleilmo
▴
490
Popular Question to
nickp60
▴
40
Popular Question to
melissachua90
▴
40
Scholar to
Matthias Zepper
1.8k
Popular Question to
jhy
▴
10
Recent Replies
Comment: Unaligned Reads From Bowtie2
by
tiziana
•
0
thank you for your answer. sorry if mine is a stupid question, as i am quite new to this, what does it mean "what is expected based on libr…
Answer: empty peaks count, ChIP-seq, filter Bam, bed, bigwig, threshold, false peaks
by
maverenia
•
0
For the MACS2 callpeak I use the following conditions:
Set lower mfold bound - 5
Set upper mfold bound - 50
Band width for picking regio…
Answer: How to convert Ensemble Gene IDs to gene symbols or Entrez Gene IDs?
by
Laura Luebbert
▴
240
gget info https://github.com/pachterlab/gget
Comment: Parsing a genebank file and tsv file - extracting and outputting specific data t
by
Zach G
•
0
Thank you very much. This is helpful. Now I tried implementing the code and it did give me a NameError: name 'category' not defined referri…
Comment: For loop rna sequencing alignment
by
iraun
4.7k
`404: Error Not Found`
(Now seriously, you forgot to copy the error ;) )
So far the only thing that I can see is that the `done` in the e…
Answer: Why 6mA data are always 41 bps long?
by
acvill
▴
160
The paper you reference ([Chen *et al*. 2019](https://doi.org/10.1093/bioinformatics/btz015)) includes the following excerpt, emphasis mine…
Answer: DEXseq estimateDispersions() returns error `replacement has 1 row, data has 0`
by
tien
▴
10
I know the reason now. DESeqDataSet will automatically calculate count of other bins and generat column sample in colData. Previously, I ma…
Comment: For loop rna sequencing alignment
by
Pierre Lindenbaum
149k
not an answer but : you'd better use a workflow manager like snakemake or nextflow.
> ..I am getting this error
what is "this error" ?
Answer: Mapping PDB ID + chain ID to UniProt ID
by
Wayne
★
1.4k
### Issue with pypdb route
The pypdb route fails because the API pypdb access changed that it uses so that [the information no longer incl…
Comment: Parsing a genebank file and tsv file - extracting and outputting specific data t
by
Andrzej Zielezinski
11k
Thanks - now I understood. Please see my answer.
Answer: Parsing a genebank file and tsv file - extracting and outputting specific data t
by
Andrzej Zielezinski
11k
The following code produces the output you provided. Hope you find this code helpful.
from Bio import SeqIO
GBK_FILE = 'input…
Answer: Mapping PDB ID + chain ID to UniProt ID
by
Jiyao Wang
▴
220
You can use an API from SIFT and parse the JSON output, e.g., https://www.ebi.ac.uk/pdbe/api/mappings/uniprot/1kq2
Comment: Parsing a genebank file and tsv file - extracting and outputting specific data t
by
Zach G
•
0
Great. So that is actually purposeful that there are no sequence ids common between the files. The idea is to add the sequence id's from bo…
Comment: Parsing a genebank file and tsv file - extracting and outputting specific data t
by
Andrzej Zielezinski
11k
Also the sequence record in the gbk is incomplete. Please provide the full sequence record from the beginning to the end (//) or more than …
Comment: Error with scanpy package on Jupyter notebook
by
Chris
▴
30
Thank you so much for your help!
Traffic: 1495 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6