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Tutorial:
TCGA transcriptome data to R (DESeq2)
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I would recommend editing your post with a more targeted question and include the steps you have taken thus far to try and answer it.
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Thank you Michael, this is very helpful.
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You cannot choose. The tool you use imposes that on you, and most do gapped alignments to allow for small variants in the data. After all t…
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Can you also explain about gapped and ungapped mapping? which one should I go with?
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Possibly https://hymenoptera.elsiklab.missouri.edu/orthologs could be a start....co-linear orthologs could be starting point to compute syn…
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I know this is not a specific answer to your question, but You could check out the R package `Pavian` (https://github.com/fbreitwieser/pav…
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