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Retrieve FASTA sequences for all genes from GRCh38.p13
assembly sequence written 1 hour ago by 07style • 0 • updated 8 minutes ago by vkkodali • 1.2k
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8
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Correct data for methylation data plotting (circos plot)
circos plot methylation written 38 minutes ago by maria2019 • 50
1
vote
1
answer
42
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5 follow
1
answer
Trim adapter of undefined length
adapter trimming short read written 5 hours ago by julia.mir • 0 • updated 42 minutes ago by Carambakaracho • 1.8k
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54
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0
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Installing DESeq2 on RStudio
R deseq2 written 5 hours ago by dikshapandey28 • 0 • updated 43 minutes ago by zx8754 ♦ 8.3k
3
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1
answer
231
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1
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Is there a "default" RefSeq transcript for genes?
ncbi mrna refseq transcript written 4 months ago by ludovic.malet • 0 • updated 46 minutes ago by vkkodali • 1.2k
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1
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189
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1
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get gene biotype for hg38 refseq
refseq hg38 gene biotype written 4 months ago by idaliu613 • 0 • updated 50 minutes ago by vkkodali • 1.2k
1
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785
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Tool: GCevobase: an evolution-based database for GC content in eukaryotic genomes
genome gc content evolution tool written 20 months ago by wangdp123 • 180
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1.4k
views
0
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Tool: Tools and databases for gene co-linearity and conserved pairs and clusters in a large scale of genomes
genome gene pair tool gene order gene synteny written 3.6 years ago by wangdp123 • 180
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15
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3' Tag-Seq / DE Analysis - FASTQC detects overrepresented sequences as well as fails per base & GC sequence content
trimmomatic tag-seq sortmerna rna-seq fastqc written 1 hour ago by gmchaput • 0
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55
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Composition of low mappable region in human genome
homologous region mappability repetitive region written 1 day ago by CY • 410 • updated 1 hour ago by Biostar ♦♦ 20
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0
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16
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0
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CLC not outputting or showing table from Fisher's Exact Test
fisher's exact test clc fisher blast2go rna-seq written 2 hours ago by jjrin • 10
3
votes
1
answer
47
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1
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DEGs from *genes.results or *isoforms.results
assembly alignment rna-seq written 9 hours ago by GP • 10 • updated 3 hours ago by JC ♦ 8.8k
0
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1
answer
72
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1
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How to introduce artificial mutation in bam
bam mismatch written 6 hours ago by bassanio • 10 • updated 3 hours ago by JC ♦ 8.8k
465
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19
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43k
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225 follow
19
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 2.9 years ago by Istvan Albert ♦♦ 81k • updated 3 hours ago by zoeywilson141 • 0
2
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0
answers
126
views
0
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Range of TPM values in a dataset
rna-seq sequencing written 3 days ago by Nimzo • 10
0
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0
answers
24
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0
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Using predicted secreted proteins to match Differentially Expressed genes
rna-seq written 4 hours ago by aiderthetater • 0
13
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4
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126
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9 follow
4
answers
GPU based parallel processing in genomics tools
assembly ngs softwares written 14 hours ago by hafiz.talhamalik • 160 • updated 4 hours ago by JC ♦ 8.8k
1
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1
answer
35
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1
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How to create a data of genotypes for each SNP for each individual
genotype blog plink geno written 5 hours ago by Ale Lope • 10 • updated 4 hours ago by chrchang523 ♦ 5.7k
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33
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0
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How to Extract Full sequences for Low Quality (predicted) Protein Sequences from whole genome data
genome assembly next-gen sequence written 5 hours ago by kkumarreddy • 0
2
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0
answers
61
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0
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Extracting the reads counts (coverage) a specific variant allele from a Fastq file
rna-seq snp sequencing written 5 hours ago by a.james • 210
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45
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0
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Job: Senior Bioinformatician, University of Chicago
software omics next-gen job written 5 hours ago by Danielle • 300
2
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0
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45
views
0
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(Closed) Relationship between diabetes and breast cancer
diabetes td2 breast cancer written 6 hours ago by handeaycicek • 0 • updated 6 hours ago by bassanio • 10
7
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1
answer
152
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1
answer
Difference between abundance and counts in RNA-Seq
tximport rna-seq written 1 day ago by chahat_u • 140
3
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0
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52
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0
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News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
news cwl written 6 hours ago by Michael R. Crusoe • 1.8k • updated 6 hours ago by Asaf ♦ 6.4k
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1
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40
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1
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extract discordant,split reads from BAM file
next-gen sequence sequencing written 8 hours ago by 9521ljh • 10 • updated 6 hours ago by h.mon ♦ 27k
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29
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0
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MCScanx is giving an Empty Output (even for example files)
mcscanx mcscan written 6 hours ago by venura • 10 • updated 6 hours ago by genomax ♦ 73k
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29
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0
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Predicting coding sequence region from GFF with exons + reference genome
genome annotation gff augustus maker written 6 hours ago by Grey Monroe • 0
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2
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692
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2
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Create Chromosome Ideogram w/ out reference genome
gene R written 23 months ago by jake.gendron • 0 • updated 7 hours ago by bernatgel • 2.1k
2
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1
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1.2k
views
1
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Plot SNPs on GViz
R snps gviz written 2.8 years ago by Jack • 120 • updated 7 hours ago by bernatgel • 2.1k
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Positive selection analysis on gene family using the PAML package
positive selection codeml written 17 months ago by farahbakhsh.sara • 0 • updated 7 hours ago by Biostar ♦♦ 20
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