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Recent Replies
Answer: canonical transcript from vep
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Emily_Ensembl
22k
No, that's been updated since then. [Details here](http://www.ensembl.org/info/genome/genebuild/canonical.html).
Comment: DE analysis with Ballgown; what are DE genes produced from data containing three
by
ATpoint
50k
Do yourself a favour and use a tool for DE that a) has been developed for gene level analysis (ballgown is for transcript level), b) does a…
Comment: How to convert a STK alignment into CLUSTAL?
by
Pancreas Pratik
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240
Hmm... I still don't understand the conversion completely... Maybe someone else could chime in?
Comment: bowtie mismatch 0 alignment output
by
Arsenal
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100
Understood. I think you really should add that information to the post.
About the mismatches. check this [similar but really old post][1] …
Comment: Viral taxonomic classification question
by
GenoMax
102k
Thinking aloud for possible explanations :
RefSeq likely has a good representation of known viral classes so if your sequences are not bei…
Comment: How to obtain all PDB IDs containing similar binding sites with a specific liga
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antoniaa
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10
Thank you for your answer Dr. Jiyao. Indeed, I got all structures that are bounded my ligand of interest. Here my problem is I have more th…
Comment: Correlation plot
by
Arsenal
▴
100
That looks pretty simple. How are you rendering the plot?
Answer: What is the correct way of setting the genotype after splitting multi-allelic si
by
Kevin Blighe
74k
It seems to assume tetraploidy at this position, yes, as inferred via `0/1/2/3`. Otherwise, we would see a GT of, e.g., `2/3`, `2/2`, etc; …
Comment: How to convert a STK alignment into CLUSTAL?
by
diego1530
▴
40
Hi Mensur,
I would like to clarify that Mlocarna only supports FASTA and CLUSTAL format. It's a pity that it does not include a STK format…
Comment: How to convert a STK alignment into CLUSTAL?
by
diego1530
▴
40
Hi.
The output of the RNALalifold program is as shown in the example above and the input I need for Mlocarna is like this:
fruA …
Comment: How to compare pathway significances after treatment?
by
Cancan
•
0
I was thinking that your dependent variable is set to be protein levels. Then dependent columns are becoming correlated due to overlap of p…
Comment: How to compare pathway significances after treatment?
by
jared.andrews07
★
10k
I don't really understand how your comments relate to each other here, but will try to address them anyway.
Yes, lots of pathways overlap.…
Comment: Reproduce Genome in a Bottle analysis from NA12878 fastq?
by
a.alnawfal.1992
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170
Great!, Looking forward to speaking with you.
Comment: Reproduce Genome in a Bottle analysis from NA12878 fastq?
by
emmanouil.a
▴
70
I found your e-mail clicking in your username ... I will send you a message by e-mail ... thank you very much for your time!
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