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Recent Replies
Comment: Keep rows with columns having values between -1 and 1 from a dataframe in R
by
Hamid Ghaedi
★
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Since the `length(condition1)` is >1, and && check only for the first element in vector, && should be avoided here.
Answer: Keep rows with columns having values between -1 and 1 from a dataframe in R
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Hamid Ghaedi
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There should be more tidy way for that, but here is my solution.
rowIdx = as.numeric()
for(i in 1:nrow(Genes)){
cond = Genes…
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If you are a Python user, below is a Python API solution using the `pyvcf` [submodule](https://sbslee-fuc.readthedocs.io/en/latest/api.html…
Comment: Keep rows with columns having values between -1 and 1 from a dataframe in R
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fracarb8
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Did you try `&&` instead of `&` ?
Comment: design matrix not of full RANK in paired design
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In the limma approach, you've simply made a typo. You intended
```
fit2 <- contrasts.fit(fit, cm)
```
instead of
```
fit2 <- contrasts.fit…
Comment: Large difference in mean reads per cell from cellranger and nCount_RNA from Seur
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Are you sure you aren't mixing up reads and UMIs? Seurat is importing from a file of UMI counts.
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Please go through the linked book. It answers all these questions.
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Thanks for reply and suggestions.
How do you consider that different read counts? What is the threshold for that? I called the peaks with S…
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Ok, so you think excluding 1.5 million varaint wont make much difference since I already have almost 4.5 million varaint considered by PRS…
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Simply put, the rsid or snp id in your GWAS was not found in your target. There’s still a very healthy amount of overlap, so I won’t be too…
Comment: Keep rows with columns having values between -1 and 1 from a dataframe in R
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Assuming these are log2 fold changes or something like that, I don't know why you would want columns with values between -1 and 1, because …
Comment: Keep rows with columns having values between -1 and 1 from a dataframe in R
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Thank you for your comment but unfotunately it did not work for me.
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Yes - I was saying that **I am more likely to use STAR than TopHat2 on new samples**, although you can get some sense of how much of a diff…
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$ tail -n+1 *.fa
==> test1.fa <==
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MDNAVGYH
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MLR
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Hi @Pahi!
Glad that my answer help you.
Regarding your question, as far as I know `bash`, if you have used the same code as above with y…
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