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Recent Replies
Comment: SARS-CoV-2 lineages complete reference genomes
by
GenoMax
115k
I don't know if the following two resources are going to provide `reference` genomes. You may have to go to GSAID for that.
Answer: SARS-CoV-2 lineages complete reference genomes
by
GenoMax
115k
From EBI: https://www.covid19dataportal.org/sequences?crossReferencesOption=all
![EBI][1]
[1]: /media/images/04dd9b11-77a8-4327-8…
Answer: Software to draw protein domains of proteins
by
cmdcolin
★
2.1k
tools mentioned by other users are great, a couple more tools here https://cmdcolin.github.io/awesome-genome-visualization/?latest=true&tag…
Answer: SARS-CoV-2 lineages complete reference genomes
by
GenoMax
115k
At [**NCBI SARS-CoV-2**][1] resource page. Be sure to switch to `Nucleotide` tab and then click on pango lineage search.
![Pango][2]
…
Answer: comparisons between 2 ChIP-seq datasets
by
jared.andrews07
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13k
Honestly, I'd just eyeball the tracks in IGV. It's usually pretty apparent.
If you want more objective measures, you could look at total…
Comment: data correaltion
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Jeremy
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FYI the cor.test() function will display a p-value in addition to the correlation coefficient.
Comment: Inflation in Imputed data
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desicasares@gmail.com
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Thank you for your answer...the populations I am using are Spanish, North European and Italian individuals.
In the case of the Italians t…
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dsull
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Correct, which is why you should load your output into R or python and filter your cells (i.e. do the "knee plot"). See the kallisto | bust…
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You can use `HardyWeinberg::maf` to calculate MAF from a vector of frequencies. You can create this vector of HOM/HET/HOM-ALT frequencies u…
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ailton
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Thanks a lot for the help. I managed to run it using its parameters, I also used other methods to run tblasx **$ tblastx -db databases/refe…
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Check out the Simons Genome Diversity Project:
[Simons Genome Diversity][1]
[1]: https://cloud.google.com/life-sciences/docs/resour…
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