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qRT-PCR data analysis steps and workflow
reference genes deltact fc qrt-pcr normalization written 10 hours ago by mohammedtoufiq91 • 0
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7
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Comparing the size of assemblies, contiguity and busco stats of multiple isolates genome
assembly written 24 minutes ago by nagarsaggi • 0
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gatk4 GenomicsDBImport intervals with whole genome
gatk intervals genomicsdbimport written 36 minutes ago by Peter Chung • 70
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4
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Is there any way to merge intervals based on a minimum overlap?
bed merge written 11 hours ago by VicGB • 0 • updated 34 minutes ago by Alex Reynolds ♦ 27k
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8
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Understanding FANTOM5 CAGE fields
transcription rna-seq tss written 1 hour ago by simplitia • 30
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8
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DBSCAN clustering in GUI or online software
gui version web based written 1 hour ago by rob.costa1234 • 150
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1
answer
46
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1
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Differential binding ChIP-seq/RNA-seq analysis
chip-seq sequencing written 7 hours ago by dcheng1 • 0 • updated 1 hour ago by Gordon Smyth • 440
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13
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Fetching the sequence from the genome
genome written 1 hour ago by zunera • 0
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10
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How i can compare multiple identified genes that are come from diversity of plant and want to BLAST against EST sequence of single plant
gene genome alignment sequence assembly written 1 hour ago by Mehar Imran Zafar • 0
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21
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SynChro input files
file conversion synchro written 3 hours ago by jmah • 10
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148
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Subread and featurecounts read index and annotation once for all
alignment featurecounts rna-seq written 9 weeks ago by bharata1803 • 400 • updated 3 hours ago by Biostar ♦♦ 20
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37
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a webserver for the bigwig files
bigwig written 3 hours ago by Bogdan • 700
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35
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Parse NCBI XML sample information into a data frame in R
ncbi R xml written 5 hours ago by willnotburn • 40
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26
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Split on Manhattan plots for chromosomes 1, 9, 16 (GWAS)
genome gwas snp written 6 hours ago by ivanovaos.09 • 0
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1
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48
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1
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Understanding Bowtie output
alignment bowtie written 7 hours ago by am3930 • 0 • updated 6 hours ago by manuel.belmadani • 470
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2
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61
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normalization in single cell RNAseq
rna-seq written 9 hours ago by kanwarjag • 930 • updated 6 hours ago by igor ♦ 7.3k
413
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17
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192 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 2.2 years ago by Istvan Albert ♦♦ 79k
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23
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'ValueError: No usable data points to plot out of 0 probes, 0 segments, 0 variants' in Scatter Plot
cnvkit written 6 hours ago by wei.wei • 0
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45
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NCBI Saccharomyces cerevisiae GENE_INFO has child taxon ID instead of parent.
ncbi taxonomy yeast written 7 hours ago by manuel.belmadani • 470
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60
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Interpro results analysis
column sort written 12 hours ago by ksenia.jravel • 0 • updated 8 hours ago by finswimmer ♦ 9.9k
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55
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Visualize a Bam file as stack reads, not reduced, using Bioconductor
R next-gen written 8 hours ago by gybazeta • 0
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1
answer
82
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5 follow
1
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Creation of a VCF file from scratch with python
vcf python written 11 hours ago by carolina.santiago.t • 0 • updated 9 hours ago by manuel.belmadani • 470
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67
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IGB won't open .gff file.
genome gff3 gff igb sequencing written 9 hours ago by stephanie.jack • 0
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107
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Generic implementations of topological enrichment methods
spia prs topologygsa clipper cepa written 6 weeks ago by lillian.thistlethwaite • 10 • updated 9 hours ago by Biostar ♦♦ 20
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47
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Unknown gene names in Clariom D human Gene chip annotation files?
clariom d written 12 hours ago by mgab • 40
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1
answer
38
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1
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De novo transcriptome assembly using Trinity
gaiix illumina rna-seq written 10 hours ago by 1234anjalianjali1234 • 30 • updated 10 hours ago by JC ♦ 7.4k
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1
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60
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1
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Calculate fragment length from Bio.Restriction Analysis Object
ddradseq in silico digest biopython written 16 hours ago by Chanz R • 0
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40
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Run abacas for multiple scaffold (20k +)
assembly written 11 hours ago by Mbillah • 110
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1
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44
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1
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Genbank GI accession format for DAVID input
david functional analysis written 11 hours ago by jfo • 0 • updated 10 hours ago by Istvan Albert ♦♦ 79k
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1
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41
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(Closed) Taking R-Program Created Microarray Data Table & Pasting it Into MS Excel
R microarray "excel" "pasting &amp; uploading" written 10 hours ago by drobinson289 • 0 • updated 10 hours ago by manuel.belmadani • 470
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