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The scaling problem is not that of parsing a FASTA file but counting the occurrence of the substring.
The parsing of the FASTA file in Bio…
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The [readfq](https://github.com/lh3/readfq/blob/master/readfq.py) python implementation here is likely close to as good as you are going to…
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Dear Dr.Dlakic,
Thank you so much for your timely comments, I really appreciate it! My question is that when I concatenate all assemblies…
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https://support.bioconductor.org/p/110433/
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I will indeed try bfctools! Thanks :)
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Past thread of interest: https://www.biostars.org/p/495333/
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Thank you for your reply!
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No problem - got you now. So you want to cluster DEGs **and samples**. You need to create a matrix where the cell in row i and column j cor…
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