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genefu for PAM50 prediction
rna-seq breast cancer subtyping written 5 minutes ago by silviajserrano • 40
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4
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81
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8 follow
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Any suggestions for basic intro to submitting jobs to an HPC cluster?
hpc ngs job submission written 2 hours ago by m93 • 90 • updated 1 hour ago by pld ♦ 4.7k
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bcl2fastq ERROR: Could not parse the CSV stream text
software error written 2 hours ago by tania.valdiviac • 0
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Understanding the ENA accession numbers for assembled/annotated sequences
assembly sequence ena written 3 hours ago by Nils Giordano • 0
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Pairwise Fst between populations using vcftools
next-gen snp written 2.4 years ago by MC • 10 • updated 3 hours ago by mellissa.demille • 0
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5 follow
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000 genomes tutorial pca plink ethnicity written 4 hours ago by Kevin Blighe ♦ 26k
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45 follow
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
vcf 1000 genomes tutorial pca plink written 11 months ago by Kevin Blighe ♦ 26k • updated 4 hours ago by genomax ♦ 54k
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Forum: Bioinformatics experience in programming
python forum bioinformatics student R written 4 hours ago by mat.lifepluse • 10 • updated 4 hours ago by finswimmer ♦ 4.8k
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56
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bcl2fastq ZlibError software error
software error written 4 hours ago by sw • 0 • updated 4 hours ago by genomax ♦ 54k
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122
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5 follow
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Add string to list of protein sequences in fasta file with different lengh
sequencing written 11 hours ago by Jason • 0 • updated 4 hours ago by benformatics • 190
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Phasing non-human genomes with Beagle - do I need to divide subjects by population?
snp phasing beagle written 5 hours ago by mstagliamonte • 0
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7 follow
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Extract only rows with main chromosomes (1-22, X, Y) on first column?
R grep script linux written 25 days ago by star • 60 • updated 5 hours ago by benformatics • 190
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Exporting data from Genevestigator
gene genome assembly genevestigator written 4 weeks ago by bweil2 • 0 • updated 5 hours ago by Biostar ♦♦ 20
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Error: Encountered internal Bowtie 2 exception (#1) (ERR): bowtie2-align exited with value 1
chip-seq written 15 months ago by salamandra • 170 • updated 5 hours ago by 815435542 • 0
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17
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172 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 21 months ago by Istvan Albert ♦♦ 77k • updated 5 hours ago by Fanta • 0
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233
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5 follow
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Box plot for single gene expression for various samples in a given condition ( male/female)
rna-seq written 9 weeks ago by vkgaur25 • 30 • updated 5 hours ago by sanchi.andrea • 0
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5 follow
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Calculating percentage of reads mapped to a reference genome
alignment written 8 hours ago by rujiporn.sun • 10 • updated 5 hours ago by Carlo Yague • 4.1k
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How can I Identify the candidates of directly regulated genes by a transcription factor (TF) using DEGs list in KO mutant of that TF without ChIP-seq data ?
genome rna-seq written 6 days ago by threepointking824 • 0
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6 follow
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Fastest way to process fasta file?
fasta sequence written 20 hours ago by gewa • 0 • updated 7 hours ago by sacha • 1.4k
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Substractive Genomics Analysis
shell scripting alignment written 10 hours ago by waqarlodhi93 • 0 • updated 7 hours ago by sacha • 1.4k
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Different results for differentially expressed genes in RNA-seq analysis with cuffdiff and R::genefilter
cuffdiff rna-seq genefilter written 12 hours ago by strangephone1988 • 0 • updated 8 hours ago by Amitm • 1.6k
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106
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circRNA-Seq analysis tools
circrna-seq circrna written 15 days ago by bounlu • 140 • updated 9 hours ago by IP • 370
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41
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specific RNA-SEQ GLM design
R design glm rna-seq written 9 hours ago by gero007 • 0
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What are the difference between Seurat and Cell Ranger pipeline in processing single cell RNA-seq data
scrna-seq sequence leukemia rna-seq written 10 hours ago by bwang258 • 0
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159
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Best way to assign pfam/EC/COGs to a set of proteins
pfam protein enzyme cog written 6 weeks ago by predeus • 620 • updated 12 hours ago by Carambakaracho • 490
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1
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93
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Are secondary alignments used by any tool?
alignment written 15 hours ago by e.benn • 60 • updated 13 hours ago by h.mon ♦ 18k
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125
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filtering reads that are uniquely mapped
python alignment samtools rna-seq written 18 hours ago by florian.bernard5 • 20 • updated 13 hours ago by finswimmer ♦ 4.8k
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Normalization method for single-cell RNAseq to be able to compare between datasets
python rna-seq R written 14 hours ago by nikitavlassenko • 0
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92
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How to make this specific "pileup" like plot?
single-cell R ggplot2 written 15 hours ago by vivekraiiitkgp • 50
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Identification of chloroplast genome in whole genome contigs
genome assembly next-gen plant genome alignment written 29 days ago by faizansaleem1992 • 30 • updated 16 hours ago by bioramg • 0
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