1
vote
1
reply
30
views
0
votes
2
replies
248
views
0
votes
0
replies
19
views
0
votes
2
replies
160
views
updated 1 hour ago by
b.contreras.moreira
▴
310
•
written 2 days ago by
analyst
▴
50
0
votes
0
replies
33
views
2 hours ago by
ohtang7
▴
40
4
votes
2
replies
92
views
updated 3 hours ago by
benformatics
4.1k
•
written 6 hours ago by
ashaneev07
▴
50
3
votes
3
replies
124
views
820
votes
169
replies
160k
views
110 follow
updated 11 weeks ago by
Biostar
3.2k
•
written 8.0 years ago by
Istvan Albert
102k
0
votes
0
replies
66
views
11 hours ago by
Jack
•
0
0
votes
3
replies
137
views
0
votes
1
reply
87
views
updated 14 hours ago by
GenoMax
148k
•
written 14 hours ago by
baibhu1234
•
0
2
votes
4
replies
609
views
14 hours ago by
baibhu1234
•
0
5
votes
9
replies
261
views
0
votes
1
reply
95
views
updated 19 hours ago by
Pierre Lindenbaum
164k
•
written 19 hours ago by
aLex97
•
0
2
votes
2
replies
163
views
14 hours ago by
Meghan.T
•
0
0
votes
3
replies
126
views
updated 1 hour ago by
Devon Ryan
104k
•
written 20 hours ago by
seaweed96
•
0
3
votes
0
replies
91
views
0
votes
2
replies
133
views
3 hours ago by
ThaiosX195
•
0
0
votes
2
replies
150
views
17 hours ago by
Luka
•
0
0
votes
0
replies
79
views
updated 21 hours ago by
GenoMax
148k
•
written 21 hours ago by
gmodlovver
•
0
3
votes
3
replies
226
views
0
votes
1
reply
129
views
updated 23 hours ago by
yura.grabovska
▴
690
•
written 1 day ago by
FJCF
•
0
3
votes
1
reply
167
views
0
votes
2
replies
158
views
0
votes
3
replies
183
views
updated 21 hours ago by
GenoMax
148k
•
written 1 day ago by
A Soggy Waffle
•
0
0
votes
0
replies
153
views
2 days ago by
cropero
•
0
0
votes
2
replies
396
views
updated 2 days ago by
hakimbazol
▴
20
•
written 5 days ago by
giulia.trauzzi
▴
30
1
vote
1
reply
211
views
0
votes
0
replies
161
views
0
votes
2
replies
345
views
updated 2 days ago by
i.sudbery
20k
•
written 3 days ago by
L.Grigoreva
•
0
0
votes
1
reply
240
views
1
vote
6
replies
439
views
updated 2 days ago by
Semir
▴
50
•
written 3 days ago by
manikin_python9f
•
0
1
vote
8
replies
551
views
9 hours ago by
chrisk
•
0
0
votes
1
reply
283
views
0
votes
2
replies
272
views
5
votes
6
replies
509
views
1
vote
6
replies
375
views
updated 3 days ago by
GenoMax
148k
•
written 3 days ago by
rajdeepboral00
•
0
0
votes
1
reply
252
views
1
vote
2
replies
255
views
7
votes
2
replies
293
views
0
votes
1
reply
208
views
1 day ago by
deniselavezzari
•
0
3
votes
1
reply
280
views
0
votes
2
replies
266
views
3
votes
3
replies
349
views
1
vote
2
replies
237
views
1
vote
2
replies
408
views
0
votes
5
replies
1.1k
views
updated 3 days ago by
dsull
★
7.0k
•
written 14 months ago by
shakyaram079
•
0
0
votes
0
replies
169
views
3
votes
1
reply
246
views
updated 4 days ago by
GenoMax
148k
•
written 4 days ago by
baibhu1234
•
0
1
vote
17
replies
1.3k
views
7 follow
Recent Votes
Recent Locations •
All
Brazil, just now
ETH Zurich, 2 minutes ago
United States, 3 minutes ago
India, 3 minutes ago
United Kingdom, 4 minutes ago
Germany, 4 minutes ago
India, 5 minutes ago
Recent Awards •
All
Scholar to
colindaven
7.0k
Scholar to
Devon Ryan
104k
Popular Question to
K.patel5
▴
150
Teacher to
Bastien Hervé
6.0k
Popular Question to
ashaneev07
▴
50
Recent Replies
Comment: Getting fasta sequence for a gene
by
ATpoint
85k
`bedtools getfasta`. You're an experienced user who has been called out for laziness many! times before, this is yet another example of zer…
Comment: DESeq2 normalizing against two baselines
by
Devon Ryan
104k
It may be helpful to know more specifically about what you mean by treatment 2 being a negative analog of treatment 1. Are these expected t…
Comment: DESeq2 normalizing against two baselines
by
Devon Ryan
104k
I'm curious how you would propose for that to work from a technical stand-point and what the resulting biological interpretation of that wo…
Answer: Is it possible to get the percentage identity between a pair of orthologs at the
by
Adrian Altenhoff
★
1.1k
Hi, no, this is not possible as we don't store the sequence identity of all the pairwise orthologs in the OMA browser.
Comment: Can we construct single pangenome for different crops
by
b.contreras.moreira
▴
310
In our experience, it's hard enough to compute whole genome alignments (WGA) among assemblies from the same species to even consider wider …
Comment: Is it possible to get the percentage identity between a pair of orthologs at the
by
dthorbur
★
2.5k
I've not used OMA, but it seems simple to download query data if you're using the online platform. What's stopping you from writing a scrip…
Answer: Can we construct single pangenome for different crops
by
dthorbur
★
2.5k
We have only just started moving into super-pangenomes which include species within a genus, typically a cultivated variety with it's wild …
Comment: heterozygous variant on the X chromosome
by
benformatics
4.1k
also worth checking for general homology genome-wide - you can BLAT the reads in IGV (maybe its in a transposable element sequence)
Answer: heterozygous variant on the X chromosome
by
benformatics
4.1k
You should start by checking if it is in the PAR region (homologous region with the Y) - https://en.wikipedia.org/wiki/Pseudoautosomal_regi…
Comment: How people usually perform scRNA Seq Analysis on HPC?
by
ATpoint
85k
I would strongly recommend a containerized solution to make things software-wise reproducible and portable.
Answer: How people usually perform scRNA Seq Analysis on HPC?
by
gglim
▴
210
1. Set up an R Environment & install essential packages on HPC;
2. Write scripts and do some tests in local RStudio (excluding mem-inten…
Comment: Split Visium spatial fastq according to barcodes
by
ThaiosX195
•
0
Thank you for your reply @genomax ! Yes, you are right only R1. I aim to perform analyses that extend beyond spatial information, which is …
Answer: How people usually perform scRNA Seq Analysis on HPC?
by
Bastien Hervé
6.0k
You can send a job in your HPC to set up a Rstudio instance or Jupyterlab instance inside containers environments like Docker or Singularit…
Comment: Database like Cellxgene for well-annotated atlas
by
ATpoint
85k
Then ImmGen is the way to go, they have lots of data to compile your markers from at the resolution you want. I would say you don't need a …
Comment: Super enhancer calling using ROSE for mm39 genome: list index out of range error
by
Gayatri
•
0
I did update the source code wherever required, changing it to MM39, adding mm39 refseq file similar to mm10 and others. The main problem i…
Traffic: 2749 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6