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Analyze a gene sequence across the 1000 genomes data
genome sequence written 4 days ago by davidenoma • 40
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vg map, paired-end reads, multi-mapping and MAPQ
vg written 38 minutes ago by cristian.groza.mcgill • 0
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236
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Job: Bioinformatics Engineer (6 months) in Clinical Bioinformatics, Curie Institute, Paris, France
next-gen job rna-seq gene panel written 1 day ago by victor.renault • 0
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Calculating Allele Balance in GATK4
gatk written 3 hours ago by MAPK • 1.7k
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18
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add sample name to bam header based on bam file name
samtools written 1 hour ago by Ana • 180 • updated 1 hour ago by Pierre Lindenbaum ♦ 133k
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Problems with FDR in RNA-seq analysis
fdr partek rna-seq sequencing written 2 hours ago by mdribeir • 0
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GSVA Error: "Less than two genes in the input expression data matrix"
R gsva rna-seq gsea written 1 hour ago by ivykosater • 0
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278 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 4.1 years ago by Istvan Albert ♦♦ 86k • updated 1 hour ago by meriv41409 • 0
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Extract the overlapping paired-end reads
paired-end reads samtools written 1 hour ago by Ar • 1.0k
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160
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Mutual Information for a collection of FASTA files
fasta python bash sequence mutualinformation written 11 weeks ago by nameuser • 30
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Does GSVA normalize sampleset?
ssgsea gsva rna-seq written 1 day ago by juara • 10
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Combine BedTools Closest and Window Command
genome bedtools sequencing snp gwas written 2 hours ago by Dotty • 0
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43
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How can I visualize the Pileup to determine if there is a 5 BP deletion?
genome sequence alignment sequencing written 4 hours ago by screadore • 0 • updated 2 hours ago by Kevin Blighe ♦ 69k
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formatting issue in data for Upset plots
next-gen upset sequencing written 5 hours ago by gfreimanis • 0 • updated 2 hours ago by swbarnes2 ♦ 9.4k
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What gene mouse IDs are these?
gene mouse id written 3 hours ago by pomodoro_sinensis • 0 • updated 2 hours ago by ATpoint ♦ 44k
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prinseq error: Use of uninitialized value $qual in scalar chomp
software error prinseq sequence written 2.7 years ago by mforthman • 40 • updated 3 hours ago by Biostar ♦♦ 20
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Creating a cls file from two groups of TCGA RNA-seq samples
R tcga rna-seq gsea written 6 hours ago by ivykosater • 0 • updated 4 hours ago by Kevin Blighe ♦ 69k
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Troubleshooting contamination in ChIP-Seq
unmapped reads chip-seq forum contamination written 5 hours ago by Zemmiphobe • 0
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45
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Structural variants detection from assembled genome from Nanopore sequence data
genome assembly nanopore written 5 hours ago by rthapa • 40 • updated 5 hours ago by trausch • 1.5k
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Getting sample IDs from dbGaP SRR?
dbgap written 5 hours ago by vctrm67 • 20
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32 follow
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Tutorial: Gene Set Enrichment Analysis
enrichment tutorial microarray rna-seq gsea written 3 months ago by Hamid Ghaedi • 1.2k • updated 5 hours ago by I0110 • 120
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Merging multiple tsv files
genome next-gen sequencing written 6 hours ago by zak • 0
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Blastp DBv5 Against HMP Entrez_query Problems
hmp sequence blast blastp entrez written 6 hours ago by Izal • 10
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Filter for nonoverlapping genomic hits and keep the longest one
genomic ranges genomics filtering written 9 hours ago by lessismore • 930 • updated 6 hours ago by rpolicastro ♦ 3.2k
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35
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Remove duplicate reads for bisulfite sequencing reads
remove duplicates dna methylation written 7 hours ago by qwzhang0601 • 70 • updated 7 hours ago by GenoMax ♦ 94k
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9 follow
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Gene set enrichment analysis with logFC and PValue
R gene expression rna-seq gsea genesetenrichment written 2.3 years ago by Vasu • 510 • updated 7 hours ago by ruhuiwen0608 • 0
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1
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What is SNP call rate?
snp written 8 hours ago by PePeLoveSience • 0 • updated 8 hours ago by Kevin Blighe ♦ 69k
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Error using BLAST+
fasta protein uniprot blast written 5.1 years ago by onspotproductions • 140 • updated 8 hours ago by Yanpeng Chen • 0
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blastp 2.10.1+ custom outfmt error
software error blastp written 6 weeks ago by Yanpeng Chen • 0
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Which correlation coefficient is best to compute the correlation of two genes or two signatures in cancer tissues
gene correlation analysis rna-seq written 9 hours ago by rashubarua2013 • 0 • updated 8 hours ago by Kevin Blighe ♦ 69k
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