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Recent Replies
Comment: errors in installing picard
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GenoMax
146k
Not delete this post. Pierre was asking you to post the comment above with the error as a new question since it is not related to your orig…
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Main point is you want to make sure you use the right pore version. That seems to automagically happen if you have internet access.
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> Specifically, 514 genes are down-regulated (log2 Fold Change < 0), while 1152 genes are up-regulated (log2 Fold Change > 0). This uneven…
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AB
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Thank you. Is there a specific test in FindMarkers that might be better suited for this ? I've always run the default wilcoxon. Maybe MAST …
Comment: errors in installing picard
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Did you mean to delete the post? I can't find a close option unfortunately.
Comment: How to convert raw Nanopore R9 fast5 files to fastq files ?
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interesting point though:
would you assume that most (all?) always use the latest most recent model? if so then indeed the system where you…
Comment: How to convert raw Nanopore R9 fast5 files to fastq files ?
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that indeed works as well
but this is in the case where you (for some reason) would like to use a specific model (and/or version of it)
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If you have access to internet then `dorado` will automatically download the correct model. You only need to specify the level of calling a…
Comment: How to convert raw Nanopore R9 fast5 files to fastq files ?
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Would that have changed lately?
I was chatting with one of the developers of dorado recently ( in the frame of a bug report) and he told …
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It also has disturbingly different profiles than ChIP-seq for the same TFs at times, which we aren't real sure how to interpret. Even profi…
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Please show `plotMA()`. Anyway, a 2:1 ratio is not really concerning, there is no guarantee DE profiles are symmetrical.
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That means it is not in `PATH`. Please google to learn what PATH is and how to add binaries to it.
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You can always subsample.
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Please post this over at Galaxy help forum for specific help: https://help.galaxyproject.org/
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These are genes located in that region: http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&lastVirtModeType=default&lastVirtModeExtraState=&vi…
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