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geneCounts from sorted bam all 0?
R rna-seq written 18 minutes ago by kathryn.eckartt • 10 • updated just now by swbarnes2 ♦ 5.0k
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23
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[solved]bcftools breaks in for loop
vcf bcftools bash bcf for-loop written 57 minutes ago by maximilian.mayerhofer • 20
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1
answer
517
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1
answer
How can Markov State Models be used for ligand-protein complex Molecular Dynamics simulations?
molecular dynamics structure written 11 months ago by skim • 30 • updated 24 minutes ago by db4 • 0
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11
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Color a supplied list of genes a different color on DESeq2 MAplot
maplot deseq2 rna-seq written 35 minutes ago by lauren.fehrman • 0
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14
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plotting RNA modifications
R rna-seq transcriptome written 44 minutes ago by suneetamodekurty77 • 0 • updated 40 minutes ago by WouterDeCoster ♦ 37k
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1
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42
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1
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DESeq interactions: What genes that are different between two experiments affects the conditions
dea interactions deseq2 rna-seq written 2 hours ago by raquelgarza95 • 30 • updated 1 hour ago by swbarnes2 ♦ 5.0k
4
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3
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4.7k
views
3
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fastx toolkit problem: fastq to fasta
fastx written 4.4 years ago by biolab • 1.1k • updated 1 hour ago by sara.dandreano • 0
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39
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how define a value for features with different frequency?
biostatistics chip-seq data integration statistics written 3 hours ago by star • 130
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18
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Compare the TPM results in different data source
gene rna-seq written 1 hour ago by lucassiowx • 0
22
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3
answers
1.0k
views
6 follow
3
answers
(solved) I couldn't reproduce the problem of max_target_seqs
blast written 5 months ago by fishgolden • 360 • updated 2 hours ago by gb • 600
4
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2
answers
95
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2
answers
ClusterProfiler fails to find GO terms
rna-seq go clusterprofiler written 1 day ago by grant.hovhannisyan • 1.4k
425
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17
answers
35k
views
195 follow
17
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 2.3 years ago by Istvan Albert ♦♦ 79k • updated 2 hours ago by Glory Basumata • 10
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31
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How does gage test the pathway statistics?
R bioconductor written 2 hours ago by ddzhangzz • 90 • updated 2 hours ago by zx8754 ♦ 6.8k
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16
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PacBio base modifications merging p6c2 and p4c2
base modifications pacbio written 2 hours ago by stolarek.ir • 580
2
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1
answer
30
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1
answer
VCF file from DanteLabs Dante Labs does not load in IGV
vcf igv index written 3 hours ago by urishab • 0
0
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0
answers
44
views
0
answers
Calculating read count with paired end sequencing
genome paired-end alignment sequencing written 3 hours ago by sb2108 • 0
3
votes
1
answer
61
views
1
answer
Bam file MC tag as integer
mc bam validatesamfile sam written 4 days ago by chariko • 30
2
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0
answers
89
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DESeq2 log2FoldChange vs Salmon log2 TPM
R deseq2 salmon rna-seq written 4 hours ago by liartom2 • 10 • updated 3 hours ago by Antonio R. Franco • 4.0k
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45
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Job: Bioinformatics Technologist - Cleveland Clinic
assembly genome job R gene sequence written 3 hours ago by vannim • 0
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answers
50
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Tool: RUPEE protein structure search
protein structure protein structure search tool written 3 hours ago by rayoub • 110
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answers
33
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protein secondary structure prediction?
protein structure protein secondary structure written 4 hours ago by rayoub • 110
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48
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Forum: Computer science grad student looking for advice/suggestions for master's thesis.
gene genome forum snp sequencing written 4 hours ago by ark2 • 0
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answers
30
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Number of species for positive selection analysis
genome alignment evolution paml positive selection written 4 hours ago by sammy.ich17 • 20
3
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1
answer
47
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1
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How can I convert .ped file to bed+bim+fam file using plink 1.9?
gene snp next-gen plink ped written 4 hours ago by sofie_carolina • 10 • updated 4 hours ago by genomax ♦ 64k
1
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527
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1
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How does deseq2 encode more than 2 levels
deseq2 rna-seq differential expression written 21 months ago by -_- • 780 • updated 4 hours ago by Biostar ♦♦ 20
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66
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5 follow
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Approximately following the GATK recommended workflow for DNA sequence data, my mpileup output files are empty
genome next-gen snp sequencing written 5 hours ago by Joel Wallenius • 10
1
vote
1
answer
61
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1
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finding new peptides from transcriptom?
alignment rna-seq sequencing written 6 hours ago by alirezaei3333 • 0
1
vote
1
answer
81
views
1
answer
ADVOCATE R package
advocate R rna-seq written 2 days ago by David_emir • 320 • updated 6 hours ago by kristoffer.vittingseerup • 1.6k
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44
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TCGA RNA-Seq: are RSEM or Z-scores based expression comparable to each other?
tcga rna-seq written 6 hours ago by lefthandgergo • 0
0
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0
answers
53
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0
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Help with mRNA region annotation
gene R sequence written 6 hours ago by Neu • 10
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