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Answer: MrBayes Stepping-stone analysis error: DEBUG ERROR: Log likelihood nan after mov
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klo
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I should add that I am using MPI version of MrBayes 3.2.6 on Ubuntu
Comment: No SINEs, LINEs, LTR and DNA elements detected by RepeatMasker
by
Shri hari
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thank you for your kind help
Comment: Low no_Feature value after using STAR for alignment
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swbarnes2
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A mismatching gtf is most often the problem, but if they match, then the problem is probably in the library prep itself, and you can't fix …
Answer: How to determine gender by homozygosity (rate?) in X chromosome?
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0
Did you figure out those values?
Comment: HISAT2 Genome indexing
by
gglim
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that's for single-ended data. Try explore the help message on your own server
Comment: HISAT2 Genome indexing
by
gglim
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Type `hisat2 --help` and check the usage
HISAT2 version 2.0.4 by Daehwan Kim (infphilo@gmail.com, www.ccb.jhu.edu/people/infphilo)
…
Comment: Extracting reads from fastq files with BBMAP?
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GenoMax
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You may need to add `substring=t`. These should work.
Comment: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
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simplitia
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Hm ok thanks. I guess I was expecting a huge duplication issue here, especially since this set of fastq files in particular was quite large…
Comment: Extracting reads from fastq files with BBMAP?
by
simplitia
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Hi, ok here is how the first few lines look like.
NAME1
K00153:706:H3VMJBBXY:4:1101:12601:1279
K00153:706:H3VMJBBXY:4:1101:25…
Comment: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
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Only patterned flowcells have optical duplicates. Is your data from such a flow cell? It is not necessary to have optical duplicates if the…
Comment: Extracting reads from fastq files with BBMAP?
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What does `names2.txt` look like (show us output of `head -5 names2.txt`)? Remember to remove `@` or `>` identifiers from read names in `na…
Comment: STAR alignment on Windows
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★
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STAR can not work with the NTFS filesystem!
So the data should be in ext4 partition in WSL2.
But it is not easy to [mount an ext partit…
Comment: HISAT error: Encountered internal HISAT2 exception (#1)
by
Muhammad Haroon
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Hi, there are many indexed file. Have you written all one by one in command line?
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