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Comment: blastn (Error: Too many positional arguments (1))
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Thank you for suggestion!
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Thanks a lot for your help!
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> without nt in -db it creates only an empty result file
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I'm not sure if following completely; It's not a basename, but together with `.fna` are different files produced by `makeblastdb`; my `$QUE…
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If you are sure the files are in `.sra` format then you could rename one file and try. Something like
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Try processing one file and see it works before you try the loop. In case your files are corrupt this is not going to work.
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No. I downloaded them by clicking on download link in NCBI website.
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Did you download the files from SRA using `prefetch`?
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Message tells you what you need to do. You need to provide an SRA accession number or name of a downloaded `.sra` file with this command.
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Information about this issue is posted in a different thead: https://www.biostars.org/p/9552006/#9552599
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