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Recent Replies
Answer: DEseq2 AND edgeR
by
Gordon Smyth
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- https://bioconductor.org/packages/release/workflows/vignettes/RnaSeqGeneEdgeRQL/inst/doc/edgeRQL.html
- https://bioconductor.org/packages…
Comment: Using R Studio on Cloud
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You could look at [Cyverse][1] it maintains VICE which have Rstudio image. You have to have free cyverse account, it provide you also with …
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Apologies for that typo. I'd like to get rid of sites that are ALT & uncalled/missing genotype across all samples, as well as those that a…
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If I understand correctly, you need to find correlations between genomic variants and gram-negativity or gram-positivity. There are a numbe…
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important for international candidates: **These positions are open to candidates authorized to work in the United States on a full-time bas…
Answer: https://biostar.slack.com account
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Don't try to create an account. Use the invite link included in this post: https://www.biostars.org/p/305186/
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Thanks for the response!
I visited the post you have linked and with go about attempting this method!
I have read the the `csaw` and `Di…
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What you need to make a count matrix is a set of reference regions, this could be the merge of all called peaks. For an extensive discussio…
Comment: DEseq2 AND edgeR
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Did you google "DESEQ tutorial"? I find hits that way. That's how I learned. Can you explain exactly why the hits you get from that won'…
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$ seqkit -w 0 tab2fx <input.fa> -o <output.fa(.gz)>
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i have a project im dong and I'm asked to analyse difference and similarities between TatB (gram negative) and TatC (gram negative and po…
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For anyone interested, I managed to solve this by downloading everything in genbank format and using that instead of fasta!
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That is not true - all email addresses are allowed. Are you sure you're not trying to join a different group (biostars.slack is not us)
Comment: Preparing ChIP-seq data for analysis with DESeq2
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gkunz
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A fantastic resource for sure, but I don't see anywhere in their lessons where they address this question. Could you point out where they d…
Comment: Preparing ChIP-seq data for analysis with DESeq2
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Harvard-Chan bioinformatics core has [ChIP-seq data analysis tutorials][1]. Look under lessons for detailed training materials.
[1]: ht…
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