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How reads are divided into taxonomy level in Qiime?
16s qiime written 3 minutes ago by agata88 • 610
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output of bedtools bamtofastq are empty files
bamtofastq bedtools fastq bam samtools written 2.5 years ago by szuszmok • 40 • updated 4 minutes ago by mari.felix5723 • 0
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Principal Component Analysis: How many most variant genes should I take?
deseq2 rna-seq written 27 minutes ago by tlorin • 210 • updated 7 minutes ago by Kevin Blighe • 3.2k
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7 follow
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How Much Does It Cost To Align A Flowcell In The Cloud?
cloud written 5.2 years ago by Jeremy Leipzig ♦ 17k
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Help to interpret results of kisSplice
kissplice rna-seq alternative splicing written 4 weeks ago by majeedaasim • 20 • updated 32 minutes ago by vincent.lacroix • 40
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Variant detection in RNA seq datasets without a reference using kISSPLICE.
de novo rna-seq snp kissplice written 7 weeks ago by koushikponnanna • 0 • updated 34 minutes ago by vincent.lacroix • 40
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125 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 10 months ago by Istvan Albert ♦♦ 74k • updated 34 minutes ago by nora • 40
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63
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fastx toolkit error
software error written 2 hours ago by i.adamo90 • 0
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separating bed file into separate files for every 100000 base pairs
assembly written 28 days ago by chrisclarkson100 • 50
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Transmembrane domain protein structure
transmembrane prediction protein structure written 3 hours ago by kennethcondon2007 • 840 • updated 56 minutes ago by cdsouthan • 1.7k
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KisSplice output for SNPs type 0a - for are the identifiers Q1_.. Q2_.. Qn_..
kissplice written 8 weeks ago by thuemmler • 0 • updated 58 minutes ago by vincent.lacroix • 40
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5 follow
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Delete ID only if not presnt in next line (lines are in pair)
snp sequencing written 3 hours ago by waqasnayab • 130 • updated 1 hour ago by cpad0112 • 2.3k
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Job: Open PhD position: Inferring genomic information from bisulfite sequencing data
bioinformatics ngs phd job bisulfite-seq written 2 days ago by David Langenberger ♦ 7.9k
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7 follow
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A Rank-Weighted Similarity Score
similarity written 4.7 years ago by a3cel2 • 50 • updated 1 hour ago by Biostar ♦♦ 20
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64
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bam file coordinate system change
bam rna-seq written 2 hours ago by Gregor Rot • 390
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73
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Missing data calling (I know, sounds weird...)
sequence snp written 2 hours ago by gerberd1990 • 0
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60
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GATB - create or manipulate data of Sequence
gatb written 2 hours ago by wfd • 0
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What is the actual cause of excessive zeroes in single cell RNA-seq data? Is it PCR?
modelling rna-seq single cell pcr written 3 hours ago by cerny.m • 10
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how to get the strand from a blast xml file
python biopython written 3 hours ago by bio90029 • 10
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[ChIPSeeker] Getting overlapping genomic feature annotation (e.g. peak locate in gene A & defined TSS region of gene B)
annotation chipseeker chip-seq written 3 hours ago by chiefcat • 70
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Best way to use champ.impute or impute.knn - neighbor approach?
R impute champ written 4 hours ago by mathias.heydt • 0
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Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of reference sequence?
flag sam bwa mapping written 12 hours ago by johnnytam100 • 30 • updated 4 hours ago by genomax ♦ 34k
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5 follow
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Any methods available to do QC analysis of Pacbio raw data??
genome assembly next-gen pacbio sequencing written 21 days ago by karthic • 0 • updated 4 hours ago by JstRoRR • 50
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Sam FLAGS : how could a read be described as "read unmapped" but "read in reverse strand"?
sam bwa written 4 hours ago by johnnytam100 • 30 • updated 4 hours ago by glihm • 450
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literature review by a web server
genes disease literature review written 3 days ago by niutster • 50 • updated 4 hours ago by Denise - Open Targets • 4.0k
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How can i used bacterial database in NCBI with bbsplit from bbmap
tool rna-seq written 4 hours ago by park.seojeong2 • 0
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108
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Error when running edgeR
rna-seq written 10 hours ago by rachel.kubik12 • 0 • updated 5 hours ago by e.rempel • 510
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Whole-transcriptome RNASeq data of RNA-i engineered organism
transgene rnai sequencing rna-seq transcriptome written 5 hours ago by Macspider • 1.5k
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FastTree running problem
software error written 6 hours ago by horsedog • 20
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86
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Test of selection for gene variants with in a species
gene dn/ds ka/ks selection snp written 21 hours ago by JstRoRR • 50 • updated 6 hours ago by Emily_Ensembl ♦ 13k
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