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Bifurcate network between genes and pathways
gene pathway interaction written 21 minutes ago by Neel • 0
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1
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A small detail when use VEP
vep written 3 hours ago by Laven9 • 0 • updated 48 minutes ago by WouterDeCoster ♦ 40k
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KaryotypeR for germline mutations
R written 10 days ago by ma23 • 0
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Any strategy to select threshold for filtering genes based on mutual information square matrix?
R microarray gene-filtering written 2 hours ago by Jurat Shahidin • 80
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Should I pre-normalize RNAseq data before combat?
R normalize combat rna-seq batch effect written 2 hours ago by zhaoliang0302 • 0
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csaw - Htslib import errors and missing reads/chromosomes
csaw bam chip-seq atac-seq library written 12 months ago by reskejak • 10 • updated 2 hours ago by xuzhougeng • 0
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Differential network analysis for two treatments
R rna-seq written 3 hours ago by Jon • 90
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Bias in GO enrichment analysis for non-model organsim?
interproscan gene ontology topgo go enrichment written 11 hours ago by yh362 • 20 • updated 3 hours ago by Philipp Bayer ♦ 6.3k
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Scripting AMBER Preparation files
amber simulation molecular dynamics scripts written 3 hours ago by protein_fashion • 0
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Randomly got the following error: CRITICAL: Error executing: kneaddata_bowtie2_discordant_pairs but all the files before look fine?
assembly written 4 hours ago by O.rka • 110
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215 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 2.6 years ago by Istvan Albert ♦♦ 80k • updated 4 hours ago by chantelmarshal321 • 0
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89
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Microaaray data analysis
gene written 8 weeks ago by mahajanmohita93 • 0 • updated 5 hours ago by Biostar ♦♦ 20
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82
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1
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multiqc change sample names
multiqc written 4 days ago by Richard • 560
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32
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Running cnvkit on tumor germline paired samples
cnvkit written 7 hours ago by ww22runner • 0
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How to pairfit with a certain part of multiple structures in a pse file in pymol using command lines
software error alignment written 8 hours ago by anndybud • 0 • updated 8 hours ago by Mensur Dlakic • 210
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Is there a tool to identify miRNA clusters within a list of miRNAs?
R rna-seq sequencing written 9 hours ago by sole.r.v • 0 • updated 8 hours ago by genomax ♦ 69k
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Would anyone have access to ESSNet?
gsea rna-seq written 8 hours ago by lawrence.hsu • 0
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112
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How do you find novel transcripts using GFFcompare?
rna-seq gffcompare written 4 days ago by chahat_u • 110
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126
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R add r-squared and p-value
R written 13 hours ago by amandinelecerfdefer • 20 • updated 10 hours ago by davidtmscott • 70
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411
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1
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How to annotate LTR-retrotransposons at lineage level using LTR-digest gff output based on hmms domains
lineage ltr-retrotransposons ltr-digest written 12 months ago by gabri • 50 • updated 10 hours ago by olo0002 • 0
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samtools depth for multiple files
alignment written 10 hours ago by evelyn • 30 • updated 10 hours ago by Pierre Lindenbaum ♦ 121k
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Combining viral and host GTF files
alignment rna-seq sequencing written 2.0 years ago by divya.nandakumar • 20 • updated 11 hours ago by Biostar ♦♦ 20
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43
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Filtering tblastn results
genome gene alignment tblastn blast written 11 hours ago by juan.crescente • 20
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Help regarding RNAseq data analysis.
alignment next-gen rna-seq written 20 hours ago by maverick • 0 • updated 11 hours ago by igor ♦ 7.9k
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60
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1
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HIsat2 bam and summary output - multiple output file type
snakemake rna-seq sequencing written 16 hours ago by Payal • 30 • updated 12 hours ago by Carlo Yague • 4.5k
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What should I use to annotate the plant genes for a VCF or a Fasta?
genome R snp gene written 12 hours ago by tmrhyd • 0
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91
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Samtools mplileup detects wrong INDEL positions
variant calling samtools count nuceotides mpileup written 18 hours ago by vit.filippo • 40 • updated 13 hours ago by finswimmer ♦ 11k
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Estimate the genomic relationship between Discovery and Target sample in PRS
gwas prs written 2 days ago by landscape95 • 160 • updated 13 hours ago by Sam • 2.4k
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5 follow
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Making chain files
genome assembly alignment sequence written 14 hours ago by mc2548 • 10
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How to align paired-end Sanger sequences
alignment sequencing written 15 hours ago by jadeles • 0 • updated 14 hours ago by trausch • 1.3k
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