Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
118,746 results • Page
1 of 2375
Sort: Rank
Rank
Views
Votes
Replies
2
votes
4
replies
261
views
Interpreting phylogenetics tree
tree
itol
phylogenetics
1 hour ago by
davidmaimoun
▴ 50
1
vote
1
reply
116
views
EnhancerAtlas
enhancer
hic
updated 9 hours ago by
LChart
4.2k • written 21 hours ago by
SEJAL
• 0
0
votes
3
replies
205
views
What should I do if death cell counts and types biologically important in my single cell data?
cell
death
single
cells
scRNA
updated 3 hours ago by
dsull
★ 6.8k • written 20 hours ago by
carolofharvest
▴ 40
818
votes
167
replies
154k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
3.0k • written 7.8 years ago by
Istvan Albert
101k
0
votes
1
reply
114
views
Error in simulation interaction diagram module of Desmond
simulation
MD
1 day ago by
20212854117sakib
• 0
3
votes
8
replies
604
views
Kallisto: to scaledTPM or not to scaledTPM
tximport
kallisto
EdgeR
RNAseq
updated 9 hours ago by
Gordon Smyth
★ 7.3k • written 4 days ago by
IM
• 0
0
votes
1
reply
171
views
How to find potential batch effect for microarray samples?
Gene-expression
Batch-effect
Microarray
updated 1 day ago by
Malachi Griffith
20k • written 1 day ago by
namck
• 0
0
votes
2
replies
203
views
CpG coordinates information
Methylation
Human-Genome
CpG-sites
23 hours ago by
elias01cj
• 0
3
votes
6
replies
267
views
Find all sequences with adapters without trimming them off
filtering
cutadapt
fastq
updated 1 day ago by
Jesse
▴ 830 • written 1 day ago by
Freyda
▴ 10
0
votes
0
replies
111
views
Comparative proteomics using online mass spec data
Massspectrometry
proteomics
1 day ago by
charlieclark1ee
▴ 20
0
votes
2
replies
193
views
Biostar Handbook issue with doctor.py
doctor.py
biostar
handbook
updated 1 day ago by
GenoMax
145k • written 1 day ago by
popozan
• 0
3
votes
6
replies
820
views
Is it necessary to give a "limit" SPARQL Disgenet query search?
DisGeNET
RDF
SPARQL
updated 1 day ago by
GenoMax
145k • written 10 months ago by
alirejwan.stars1994
• 0
0
votes
0
replies
118
views
Galaxy docker build
docker
galaxy
updated 1 day ago by
Ram
44k • written 1 day ago by
Lucas
▴ 10
0
votes
1
reply
218
views
Different insertion times from two methods
pacBio
mtDNA
NUMTS
updated 1 day ago by
Ram
44k • written 1 day ago by
hashim.rana11
▴ 40
0
votes
3
replies
213
views
installing ArchR on a mac
R
ArchR
updated 1 day ago by
Bastien Hervé
5.5k • written 2 days ago by
Assa Yeroslaviz
★ 1.9k
1
vote
3
replies
922
views
python package for Kendall-Colijn distances between phylogenetic trees
biology
genealogy
evolution
updated 2 days ago by
doorholez
▴ 10 • written 2.9 years ago by
Hongjin
• 0
0
votes
0
replies
116
views
LFQ values from MS counts
MS
LFQ
proteomics
mass-spectrometry
updated 1 day ago by
Ram
44k • written 2 days ago by
sebastian.gregoricchio
▴ 30
3
votes
2
replies
180
views
BCFTOOLS VIEW parameter?
SNP
updated 2 days ago by
Pierre Lindenbaum
163k • written 2 days ago by
charlie
• 0
3
votes
6
replies
353
views
Why do a bacterium need CRISPR system?
CRISPR
Genetics
21 minutes ago by
Farhat
• 0
1
vote
2
replies
202
views
renv does not activate the environment
environment
renv
2 days ago by
Parham
★ 1.6k
0
votes
0
replies
112
views
How to Visualize RMSF in XMGRACE or VMD?
docking
simulation
MD
Molecular
2 days ago by
Sky
• 0
3
votes
2
replies
216
views
Get PDB files from UniProt IDs
protein-structure
UniProt
PDB
proteins
updated 1 day ago by
Wayne
★ 2.0k • written 2 days ago by
dbykov
• 0
0
votes
1
reply
145
views
WGCNA: Problem with selecting soft threshold below R^2 0.8
R
network
WGCNA
updated 2 days ago by
1769mkc
★ 1.2k • written 2 days ago by
emilymily77
• 0
0
votes
7
replies
328
views
Chromium 5’ Next GEM single cell STARsolo
10x
STAR
scRNA-seq
updated 7 hours ago by
dsull
★ 6.8k • written 2 days ago by
hood821
• 0
13
votes
9
replies
6.9k
views
6 follow
Tutorial:
STARsolo config for 10x Chromium v1, v2, v3
Chromium
10x
STARsolo
STAR
updated 1 day ago by
GenoMax
145k • written 4.0 years ago by
Kevin Blighe
88k
6
votes
4
replies
44k
views
7 follow
How to convert a URL into a DOI programmatically
pubmed
doi
url
updated 2 days ago by
Janine
• 0 • written 8.0 years ago by
entheologist33
▴ 100
0
votes
1
reply
216
views
Identifying statistically significant clusters between two populations of variable sizes
immune-response
flow-cytometry
updated 2 days ago by
LChart
4.2k • written 3 days ago by
Stephen
• 0
0
votes
0
replies
117
views
News:
Metabolomics with R/Bioconductor Online Course
Metabolomics
Bioconductor
R
Untargeted
Targeted
updated 1 day ago by
Ram
44k • written 2 days ago by
carlopecoraro2
★ 2.6k
4
votes
4
replies
272
views
Biostatistics with few samples in seqRNA counts
biostatistics
updated 2 days ago by
dariober
14k • written 2 days ago by
Lucas
▴ 10
0
votes
3
replies
239
views
Multiple SRR files correspond to the same GSM in GEO
fastq
geo
updated 1 day ago by
GenoMax
145k • written 2 days ago by
SHIRUI
• 0
1
vote
3
replies
205
views
How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-Seq Data? Post:
RNA-Seq
updated 2 days ago by
i.sudbery
20k • written 2 days ago by
roxana
• 0
4
votes
2
replies
231
views
Snakemake - Missing output files
Snakemake
2 days ago by
am29
▴ 40
3
votes
6
replies
335
views
Snakemake and conda directory structure
management
workflow
snakemake
conda
updated 20 hours ago by
Michael
55k • written 2 days ago by
hpapoli
▴ 150
5
votes
8
replies
415
views
Help Choosing a Workstation for a New Bioinformatics Service
NGS
hardware
workstation
updated 20 hours ago by
i.sudbery
20k • written 2 days ago by
AresSanchz
• 0
0
votes
0
replies
130
views
Molecule toxicity prediction
molecule-toxicity
off-target
updated 1 day ago by
Ram
44k • written 2 days ago by
nataliariedelc
• 0
0
votes
1
reply
160
views
SNPs profile on chromosome 1 curve
profile
SNPs
updated 1 day ago by
Ram
44k • written 2 days ago by
Nuglozeh
▴ 10
0
votes
2
replies
178
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
bioconductor
Rpackage
clusterprofiler
2 days ago by
iamsmor
• 0
6
votes
8
replies
2.5k
views
How To Transform A Location-Type Coordinate Into Integer Or String?
biopython
updated 3 days ago by
Asan Emirsale
• 0 • written 12.6 years ago by
Jelena_bioinf
▴ 40
0
votes
1
reply
185
views
Can we treat outliers as batch variables in linear modeling?
R
modeling
Outlier
linear
updated 1 day ago by
dthorbur
★ 2.4k • written 3 days ago by
aUser
▴ 30
0
votes
1
reply
194
views
How to Perform Differential Expression Analysis Between Two Species' Transcriptomes?
transcriptomics
differential-expression
genomics
updated 1 day ago by
Ram
44k • written 3 days ago by
PALA
• 0
5
votes
7
replies
613
views
Differential expressed genes - much more DE genes for one factor in the additive model than the interaction model . What may be the reason?
DESeq2
2 days ago by
Pei
▴ 210
0
votes
2
replies
215
views
host-specific pathogens taxonomy IDs
taxonomy
taxon
NCBI
host-specific-pathogens
updated 1 day ago by
Ram
44k • written 3 days ago by
kseniamacias
• 0
0
votes
1
reply
180
views
GenBank submission through BankIt
chloroplast
genome
FeatureFile
GenBank
BankIt
3 days ago by
a.bibek52
▴ 10
5
votes
7
replies
385
views
High Detection of Duplication in RNAseq dataset
Deduplication
RNAseq
2 days ago by
karlensberg
• 0
0
votes
0
replies
163
views
News:
Cellosaurus release 50 is available
database
knowledgebase
cell-line
updated 3 days ago by
Ram
44k • written 3 days ago by
Amos Bairoch
▴ 120
6
votes
7
replies
335
views
Trying to understand basic DiffBind usage
DiffBind
ChIP-seq
1 day ago by
alejandrocastillaibeas
▴ 20
0
votes
1
reply
184
views
How to draw a Manhattan diagram based on the gene names?
gwas
manhattan-plot
r
updated 3 days ago by
Ram
44k • written 3 days ago by
jienting0402
• 0
0
votes
1
reply
209
views
Trying to extract ONLY protein sequences with Augustus
Augustus
gff
sequences
protein
updated 1 day ago by
dthorbur
★ 2.4k • written 3 days ago by
eedeaguiar
• 0
1
vote
3
replies
633
views
Identify SNPs with Fst estimates > 0.9 and annotate them
snpeff
fst
SNP
updated 3 days ago by
Pierre Lindenbaum
163k • written 16 months ago by
anasjamshed
▴ 130
0
votes
1
reply
218
views
Help Analysing Perturb-Seq Data - How do I extract 10X cell barcodes and relevant guides from fastq files?
Single-Cell
Perturb-Seq
10X
updated 3 days ago by
yura.grabovska
▴ 420 • written 3 days ago by
jesswhitts
• 0
118,746 results • Page
1 of 2375
Recent Votes
Answer: Why do a bacterium need CRISPR system?
Comment: Why do a bacterium need CRISPR system?
Answer: Interpreting phylogenetics tree
Answer: Interpreting phylogenetics tree
Comment: Kallisto: to scaledTPM or not to scaledTPM
The Biostar Handbook. A bioinformatics e-book for beginners.
Answer: EnhancerAtlas
Recent Locations •
All
United States,
6 minutes ago
Russia,
7 minutes ago
usa,
8 minutes ago
Poland,
15 minutes ago
Tel Aviv,
16 minutes ago
Norway,
19 minutes ago
Finland,
22 minutes ago
Recent Awards •
All
Teacher
to
Radu Tanasa
▴ 140
Popular Question
to
jkim
▴ 170
Popular Question
to
Yao
▴ 30
Scholar
to
Pierre Lindenbaum
163k
Popular Question
to
Franklin
• 0
Popular Question
to
jared.andrews07
★ 17k
Teacher
to
Mensur Dlakic
★ 28k
Recent Replies
Comment: Why do a bacterium need CRISPR system?
by
Farhat
• 0
Thanks. Now I understood it
Answer: Interpreting phylogenetics tree
by
davidmaimoun
▴ 50
I understand know! Thank you for this precious help!
Comment: What should I do if death cell counts and types biologically important in my sin
by
dsull
★ 6.8k
I don’t have a great answer to your question since I’ve always excluded cells that I think are dead/bad/low-quality/etc. However, since you…
Comment: Why do a bacterium need CRISPR system?
by
GenoMax
145k
Those are different types of nucleases. They form part of the CRISPR system. See: https://en.wikipedia.org/wiki/Cas12a > Cas12a is distin…
Comment: What should I do if death cell counts and types biologically important in my sin
by
carolofharvest
▴ 40
A low-quality cluster is forming in the UMAP plot. However, how can I determine whether the cells in this cluster are truly showing a high …
Comment: Chromium 5’ Next GEM single cell STARsolo
by
dsull
★ 6.8k
Saying “it didn’t work” gives me no information… I can’t help you if all you say is it “didn’t work”. What’s the error message?
Answer: EnhancerAtlas
by
LChart
4.2k
These are scores from EAGLE: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821050/
Comment: Kallisto: to scaledTPM or not to scaledTPM
by
Gordon Smyth
★ 7.3k
If you use tximport to read kallisto output into edgeR, then you must follow the instructions in the tximport vignette. The appropriate sec…
Comment: Why do a bacterium need CRISPR system?
by
Farhat
• 0
But cas1-cas2 is also doing the same thing right?
Answer: What should I do if death cell counts and types biologically important in my sin
by
Michael
55k
If you are interested in the amount of dying or stressed cells, you could add the percent MT counts per cell instead of removing them. Afte…
Comment: Help Choosing a Workstation for a New Bioinformatics Service
by
i.sudbery
20k
Cloud would be much more expensive is you run it continually, the way you would run an on-prem system. But if, for example, you spec a mach…
Comment: Help Choosing a Workstation for a New Bioinformatics Service
by
i.sudbery
20k
> s. NIH is now holding the parental institutions of a PI with NIH grants responsible to manage data from NIH grants. Failure to store data…
Comment: Snakemake and conda directory structure
by
Michael
55k
How large or restricted the environment(s) need to be is very situational and a matter of taste. It may be possible to use a single environ…
Comment: Can't reproduce harmony results in Seurat
by
Bastien Hervé
5.5k
I have seen something similar before. If the processor chip from your MacBooks are different, it might affect your results. Like the way th…
Comment: Help Choosing a Workstation for a New Bioinformatics Service
by
GenoMax
145k
Do I read it right that you are going to set up a **single** workstation for 79 research groups? That is not going to be a good solution fo…
Traffic: 933 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6