updated 2 hours ago by
swbarnes2
14k
•
written 9 hours ago by
laura.bertola
•
0
0
votes
2
replies
89
views
0
votes
0
replies
31
views
3 hours ago by
nwerry
•
0
0
votes
0
replies
64
views
0
votes
0
replies
54
views
813
votes
167
replies
149k
views
109 follow
updated 7 weeks ago by
Biostar
2.9k
•
written 7.6 years ago by
Istvan Albert
101k
0
votes
0
replies
61
views
0
votes
1
reply
125
views
updated 11 hours ago by
Zhenyu Zhang
★
1.2k
•
written 22 hours ago by
tomas4482
▴
420
0
votes
0
replies
65
views
0
votes
2
replies
103
views
31 minutes ago by
Tze Jet
•
0
0
votes
0
replies
73
views
0
votes
2
replies
161
views
3
votes
2
replies
128
views
0
votes
0
replies
79
views
updated 10 hours ago by
Ram
44k
•
written 14 hours ago by
Manuel Sokolov Ravasqueira
▴
110
2
votes
1
reply
121
views
0
votes
2
replies
215
views
0
votes
0
replies
82
views
14 hours ago by
Chris
▴
320
3
votes
7
replies
1.2k
views
updated 10 hours ago by
Ram
44k
•
written 2.5 years ago by
Confused_human
▴
20
0
votes
1
reply
92
views
updated 10 hours ago by
Ram
44k
•
written 16 hours ago by
mail2steff
▴
70
0
votes
0
replies
71
views
1
vote
2
replies
136
views
0
votes
0
replies
81
views
19 hours ago by
GiantSilverSoy
▴
130
0
votes
0
replies
67
views
19 hours ago by
carlopecoraro2
★
2.6k
3
votes
2
replies
3.1k
views
updated 20 hours ago by
hewm2008
▴
50
•
written 3.3 years ago by
sankar2004
▴
60
1
vote
3
replies
167
views
0
votes
1
reply
121
views
updated 19 hours ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
Airhead
•
0
0
votes
0
replies
88
views
0
votes
0
replies
90
views
4
votes
7
replies
1.1k
views
updated 1 day ago by
Jianshu_Zhao
•
0
•
written 2.1 years ago by
davidmaimoun
▴
50
2
votes
0
replies
97
views
1 day ago by
PeterC_NCBI
▴
500
2
votes
4
replies
229
views
updated 12 hours ago by
biofalconch
★
1.1k
•
written 1 day ago by
analyst
▴
50
2
votes
5
replies
241
views
2
votes
9
replies
585
views
updated 1 day ago by
GenoMax
144k
•
written 8 weeks ago by
giulia.trauzzi
▴
10
2
votes
1
reply
168
views
0
votes
2
replies
183
views
updated 22 hours ago by
Ming Tommy Tang
★
4.1k
•
written 1 day ago by
adele
•
0
3
votes
4
replies
222
views
0
votes
1
reply
139
views
updated 1 day ago by
Ram
44k
•
written 1 day ago by
LlamaZombie
•
0
0
votes
0
replies
100
views
0
votes
3
replies
197
views
updated 22 hours ago by
Ming Tommy Tang
★
4.1k
•
written 1 day ago by
chictu
▴
10
1
vote
1
reply
132
views
0
votes
1
reply
135
views
updated 1 day ago by
Ram
44k
•
written 1 day ago by
Bertalan_Takacs
▴
100
0
votes
0
replies
100
views
3
votes
3
replies
198
views
0
votes
0
replies
133
views
0
votes
0
replies
99
views
updated 1 day ago by
Ram
44k
•
written 1 day ago by
Chirag Nepal
★
2.4k
0
votes
2
replies
251
views
1
vote
3
replies
176
views
2
votes
3
replies
1.9k
views
0
votes
2
replies
191
views
updated 22 hours ago by
Zhenyu Zhang
★
1.2k
•
written 2 days ago by
elmira.yazdii
•
0
2
votes
2
replies
207
views
0
votes
0
replies
127
views
Recent Votes
Recent Locations •
All
UCLA, 2 minutes ago
Canada, 4 minutes ago
Bắc Từ Liêm, Hà Nội, Việt Nam, 13 minutes ago
United States, 14 minutes ago
Russia, 17 minutes ago
United States, 19 minutes ago
United States, 22 minutes ago
Recent Awards •
All
Popular Question to
laura.bertola
•
0
Popular Question to
gernophil
▴
80
Popular Question to
Pegasus
▴
100
Popular Question to
synat.keam
▴
100
Commentator to
ATpoint
84k
Recent Replies
Comment: Getting A List Of Pfam Domains Involved in DNA-binding
by
Tze Jet
•
0
Thanks for the reply. However, I would also like the domains that do not have dna-binding in their description, but still may bind to DNA (…
Answer: Merging two sequencing datasets
by
swbarnes2
14k
I would be wary of combining data from two separate library preps.
Comment: Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
by
swbarnes2
14k
People don't always have control over the runs their samples go on. If you have to share a run with other paired samples that needs a 2x15…
Comment: Getting A List Of Pfam Domains Involved in DNA-binding
by
GenoMax
144k
Search ""dna binding". Export the table as TSV from https://www.ebi.ac.uk/interpro/search/text/
Filter for PFAM, if you only need those.
Answer: Merging two sequencing datasets
by
rfran010
★
1.3k
I say map and QC them separately to determine any batch differences. Then decide to merge them or not (you can merge the bams). Details may…
Comment: Absolute counts or relative abundance for BC distance matrix
by
Ram
44k
Please do not use `bioinformatics` as a tag unless your post is about the field of bioinformatics itself. For proper examples, please see F…
Answer: Don't understand three modes of TCGA STAR 2-pass
by
Zhenyu Zhang
★
1.2k
1. gencode 36 now
2. there are splice junction files
3. genomic alignment is not dependent on gene model
Comment: temp directory as output in snakemake
by
Jesse
▴
770
Yep, this behavior is easy to confirm with a couple of test rules and something like `shell: "sleep 60"` in the last one, so you can see th…
Comment: How to use GFF3 annotation to split genome fasta into gene sequence fasta in R
by
Michael
54k
While this looks as if it works fine, you should look into the vectorized [getSeq method][1] which allows to specify all coodinates at once…
Comment: Finding novel transcripts
by
biofalconch
★
1.1k
I encourage you to have a look at OrthoFinder: https://github.com/davidemms/OrthoFinder
Not only will you now which transcripts are new, y…
Answer: How to use GFF3 annotation to split genome fasta into gene sequence fasta in R
by
dthorbur
★
2.2k
Learning how to implement positive controls is extremely useful in bioinformatics. In this instance, I'm sure you can find some important g…
Answer: is that statistical correct to use DEseq2 for proteomics data
by
ATpoint
84k
Depends what the values are. Are these counts? Then yes. If intensity values (continuous) then no. limma can be an alternative here.
Answer: How do I visualize variants from VCF file in IGV?
by
Fanta
▴
10
The way to do it is to first go to `Genome > Local File...` and then select **two** files (at the same time): the FASTA file and its index …
Answer: How can we identify if there are neighboring genes or overlapping promoter regio
by
colindaven
6.5k
I'd recommend **Bedtools** for exploratory interval based work. https://bedtools.readthedocs.io/en/latest/content/example-usage.html
**Dee…
Traffic: 1207 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6