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I don't think you should be deleting anything unless you are absolutely certain that you can do it without making an error.
If you install…
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These answers really doesn't solve the problem.
Comment: Varying length sequences in hhblits (hhsuite 3.3) generated MSA
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sajid
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Just to add a bit more to my query, I have just now generated .psi MSAs instead of .a3m MSA, and the insertions are now not there, and all …
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Thanks a lot for the clarification. I am trying to use these MSAs as inputs to a local installation of [gremlin][1] for getting pairwise re…
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This is normal. This is the so-called A3M format, in which inserts are shown as lower case characters, matches as upper case characters, de…
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