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bam file coordinate system change
bam rna-seq written 10 minutes ago by Gregor Rot • 390
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35
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fastx toolkit error
software error written 38 minutes ago by i.adamo90 • 0
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44
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Missing data calling (I know, sounds weird...)
sequence snp written 49 minutes ago by gerberd1990 • 0
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1
answer
57
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1
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Delete ID only if not presnt in next line (lines are in pair)
snp sequencing written 1 hour ago by waqasnayab • 130 • updated 51 minutes ago by Pierre Lindenbaum ♦ 99k
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42
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GATB - create or manipulate data of Sequence
gatb written 56 minutes ago by wfd • 0
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31
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Transmembrane domain protein structure
transmembrane prediction protein structure written 1 hour ago by kennethcondon2007 • 840
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43
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What is the actual cause of excessive zeroes in single cell RNA-seq data? Is it PCR?
modelling rna-seq single cell pcr written 1 hour ago by cerny.m • 0
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41
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how to get the strand from a blast xml file
python biopython written 1 hour ago by bio90029 • 10
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46
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[ChIPSeeker] Getting overlapping genomic feature annotation (e.g. peak locate in gene A & defined TSS region of gene B)
annotation chipseeker chip-seq written 1 hour ago by chiefcat • 70
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125 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 10 months ago by Istvan Albert ♦♦ 74k • updated 1 hour ago by nora • 40
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56
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Best way to use champ.impute or impute.knn - neighbor approach?
R impute champ written 2 hours ago by mathias.heydt • 0
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3
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127
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3
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Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of reference sequence?
flag sam bwa mapping written 10 hours ago by johnnytam100 • 30 • updated 2 hours ago by genomax ♦ 34k
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2
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5 follow
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Any methods available to do QC analysis of Pacbio raw data??
genome assembly next-gen pacbio sequencing written 21 days ago by karthic • 0 • updated 2 hours ago by JstRoRR • 50
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1
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66
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1
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Sam FLAGS : how could a read be described as "read unmapped" but "read in reverse strand"?
sam bwa written 2 hours ago by johnnytam100 • 30 • updated 2 hours ago by glihm • 430
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3
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127
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3
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literature review by a web server
genes disease literature review written 3 days ago by niutster • 50 • updated 2 hours ago by Denise - Open Targets • 4.0k
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61
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How can i used bacterial database in NCBI with bbsplit from bbmap
tool rna-seq written 2 hours ago by park.seojeong2 • 0
0
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1
answer
104
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1
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Error when running edgeR
rna-seq written 8 hours ago by rachel.kubik12 • 0 • updated 3 hours ago by e.rempel • 510
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50
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Whole-transcriptome RNASeq data of RNA-i engineered organism
transgene rnai sequencing rna-seq transcriptome written 3 hours ago by Macspider • 1.5k
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60
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FastTree running problem
software error written 4 hours ago by horsedog • 20
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1
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84
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1
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Test of selection for gene variants with in a species
gene dn/ds ka/ks selection snp written 19 hours ago by JstRoRR • 50 • updated 4 hours ago by Emily_Ensembl ♦ 13k
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1
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65
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1
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Kallisto rna seq tool
rna-seq written 5 hours ago by makwana.kd • 0 • updated 4 hours ago by Nicolas Rosewick • 5.4k
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59
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Scaffolding assembly contig with various Mate pair Library Inquiry
sspace scaffolding mate pair library written 4 hours ago by edge • 0
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1
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79
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1
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Removing rRNA,tRNA,snoRNA, etc from miRNA sequence data
alignment rna-seq written 8 hours ago by tofukaj • 0 • updated 4 hours ago by glihm • 430
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52
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Tool: SNP2HLA - how can I get the results of all defined markers?
genome gene tool snp written 4 hours ago by khn • 0
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55
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Tutorial: Accessing sequences using batch entrez
genome tutorial written 4 hours ago by mawia.martha • 0
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124
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how to genotype given SNP alleles from NGS data using freebayes
ngs freebayes genotype written 28 days ago by J.F.Jiang • 650 • updated 5 hours ago by Biostar ♦♦ 20
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1
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identify the type of repeat genomic region of a BED file
genome sequence written 6 hours ago by jing.mengrabbit • 0 • updated 6 hours ago by Alex Reynolds ♦ 21k
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NTC RNAseq analysis
nextseq rna-seq ntc written 6 hours ago by cmayoh • 0
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93
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Genome size estimation using jellyfish
genome size kmer dual peaks jellyfish written 7 hours ago by karthic • 0
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107
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E-value results from hmmsearch are not accurate. [HMMER]
sequence sequencing written 1 day ago by danzanzu • 0 • updated 10 hours ago by Shyam • 100
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