1
vote
0
replies
31
views
0
votes
0
replies
23
views
0
votes
0
replies
26
views
4 hours ago by
ivet_tagareva111
•
0
0
votes
2
replies
79
views
0
votes
0
replies
26
views
630
votes
159
replies
74k
views
95 follow
0
votes
0
replies
33
views
6 hours ago by
BioStar123
•
0
0
votes
1
reply
72
views
updated 7 hours ago by
Pierre Lindenbaum
140k
•
written 8 hours ago by
san
•
0
2
votes
4
replies
168
views
updated 2 hours ago by
fracarb8
▴
400
•
written 8 hours ago by
saamar.rajput
▴
70
2
votes
1
reply
97
views
updated 8 hours ago by
GenoMax
109k
•
written 13 hours ago by
charlieclark1ee
•
0
1
vote
4
replies
248
views
3
votes
6
replies
218
views
updated 7 hours ago by
antonioggsousa
★
2.2k
•
written 13 hours ago by
Pahi
•
0
1
vote
2
replies
249
views
updated 10 hours ago by
colindaven
★
3.3k
•
written 4 months ago by
bioanyimima
•
0
0
votes
0
replies
38
views
10 hours ago by
Sar
•
0
0
votes
2
replies
114
views
10 hours ago by
Bioinf_Questions
•
0
0
votes
2
replies
137
views
Large difference in mean reads per cell from cellranger and nCount_RNA from Seurat, is it a problem?
updated 2 hours ago by
swbarnes2
11k
•
written 11 hours ago by
piloc16566
•
0
1
vote
3
replies
170
views
1
vote
2
replies
130
views
updated 7 hours ago by
cpad0112
17k
•
written 12 hours ago by
SaltedPork
▴
120
0
votes
4
replies
165
views
updated 10 hours ago by
Pierre Lindenbaum
140k
•
written 12 hours ago by
mailard
•
0
3
votes
4
replies
6.4k
views
1
vote
3
replies
215
views
0
votes
0
replies
33
views
13 hours ago by
AfinaM
▴
30
2
votes
6
replies
252
views
0
votes
0
replies
34
views
0
votes
0
replies
62
views
15 hours ago by
andrea.furlani
•
0
0
votes
0
replies
45
views
2
votes
1
reply
116
views
0
votes
0
replies
48
views
20 hours ago by
bigmawen
▴
410
0
votes
1
reply
116
views
updated 20 hours ago by
Mark
★
1.0k
•
written 1 day ago by
prithvi.mastermind
▴
20
3
votes
10
replies
431
views
1
vote
3
replies
219
views
updated 20 hours ago by
Mensur Dlakic
★
15k
•
written 1 day ago by
a.mostafa5050
•
0
0
votes
2
replies
143
views
1
vote
1
reply
180
views
updated 17 hours ago by
cpad0112
17k
•
written 22 hours ago by
ritiksinha005
▴
10
3
votes
3
replies
195
views
updated 2 hours ago by
Gordon Smyth
★
3.6k
•
written 1 day ago by
jfertaj
▴
100
0
votes
2
replies
178
views
0
votes
0
replies
53
views
1 day ago by
shinken123
▴
100
0
votes
0
replies
40
views
4
votes
19
replies
8.0k
views
3
votes
3
replies
265
views
1
vote
6
replies
278
views
0
votes
0
replies
52
views
1 day ago by
ritz
▴
10
1
vote
2
replies
143
views
1
vote
3
replies
237
views
updated 16 hours ago by
Carlo Yague
7.2k
•
written 1 day ago by
samc
•
0
0
votes
3
replies
218
views
updated 1 day ago by
colindaven
★
3.3k
•
written 3 days ago by
dyfn1947
•
0
0
votes
3
replies
169
views
1
vote
2
replies
137
views
updated 1 day ago by
Pierre Lindenbaum
140k
•
written 1 day ago by
raalsuwaidi
▴
30
0
votes
0
replies
44
views
0
votes
0
replies
49
views
2
votes
4
replies
1.4k
views
0
votes
1
reply
274
views
updated 1 day ago by
Pierre Lindenbaum
140k
•
written 1 day ago by
Muthusamy
•
0
Recent Votes
Recent Locations •
All
Russia, 2 minutes ago
Sweden, 2 minutes ago
Netherlands, 3 minutes ago
United States, 10 minutes ago
USA, 12 minutes ago
Sweden, 17 minutes ago
Houston, 17 minutes ago
Recent Awards •
All
Teacher to
Gordon Smyth
★
3.6k
Popular Question to
pbigbig
▴
230
Popular Question to
gabri
▴
60
Popular Question to
fifty_fifty
▴
20
Scholar to
duncan.sussfeld
•
0
Recent Replies
Comment: Keep rows with columns having values between -1 and 1 from a dataframe in R
by
fracarb8
▴
400
Did you try `&&` instead of `&` ?
Comment: design matrix not of full RANK in paired design
by
Gordon Smyth
★
3.6k
In the limma approach, you've simply made a typo. You intended
```
fit2 <- contrasts.fit(fit, cm)
```
instead of
```
fit2 <- contrasts.fit…
Comment: Large difference in mean reads per cell from cellranger and nCount_RNA from Seur
by
swbarnes2
11k
Are you sure you aren't mixing up reads and UMIs? Seurat is importing from a file of UMI counts.
Comment: How the global level of histone markers are changed by treatment
by
ATpoint
55k
Please go through the linked book. It answers all these questions.
Comment: How the global level of histone markers are changed by treatment
by
Farzaneh
•
0
Thanks for reply and suggestions.
How do you consider that different read counts? What is the threshold for that? I called the peaks with S…
Comment: Many SNPs getting excluded during PRSice 2 analysis
by
m.shoaib
•
0
Ok, so you think excluding 1.5 million varaint wont make much difference since I already have almost 4.5 million varaint considered by PRS…
Answer: Many SNPs getting excluded during PRSice 2 analysis
by
Sam
★
4.0k
Simply put, the rsid or snp id in your GWAS was not found in your target. There’s still a very healthy amount of overlap, so I won’t be too…
Comment: Keep rows with columns having values between -1 and 1 from a dataframe in R
by
Mensur Dlakic
★
15k
Assuming these are log2 fold changes or something like that, I don't know why you would want columns with values between -1 and 1, because …
Comment: Keep rows with columns having values between -1 and 1 from a dataframe in R
by
saamar.rajput
▴
70
Thank you for your comment but unfotunately it did not work for me.
Comment: TopHat2 Download URL Broken?
by
Charles Warden
8.1k
Yes - I was saying that **I am more likely to use STAR than TopHat2 on new samples**, although you can get some sense of how much of a diff…
Comment: how to replace fasta header
by
cpad0112
17k
$ tail -n+1 *.fa
==> test1.fa <==
>bas12
MDNAVGYH
>bas13
MLSRTEQR
>seq
MLR
==> test2.fa <==
>s…
Comment: STAR alignment in a full directory
by
antonioggsousa
★
2.2k
Hi @Pahi!
Glad that my answer help you.
Regarding your question, as far as I know `bash`, if you have used the same code as above with y…
Comment: awk syntax within GNU parallel
by
Samantha Lea
•
0
To avoid issues with the quoting, I have now edited the code to call on an awk function. As such:
awk_code() {
awk '$1==$4'
}
export -f a…
Comment: Replace fasta ID with value from TSV file (sed with special characters)
by
cpad0112
17k
$ cat file.fa
>seq1
atgc
$ sed -r "s_^>.*\$_>12456789.AB.25/12/21_g" file.fa
>12456789.AB.25/12/21
atgc
Two …
Comment: STAR alignment in a full directory
by
Pahi
•
0
Dear António!
Thank you for your, help and explanation. It helped me a lot. But still I had a problem with the names, so I removed the
1_r…
Traffic: 1598 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6