updated 41 minutes ago by
Gordon Smyth
★
3.4k
•
written 12 months ago by
thancy
▴
10
1
vote
6
replies
592
views
0
votes
2
replies
89
views
0
votes
1
reply
72
views
updated 5 hours ago by
lieven.sterck
12k
•
written 6 hours ago by
cdeantoneo31
•
0
0
votes
0
replies
39
views
0
votes
0
replies
37
views
621
votes
156
replies
72k
views
92 follow
0
votes
0
replies
41
views
7 hours ago by
rheab1230
▴
20
1
vote
1
reply
77
views
updated 7 hours ago by
ATpoint
54k
•
written 7 hours ago by
poria.laghayee
•
0
1
vote
4
replies
135
views
0
votes
0
replies
38
views
0
votes
2
replies
58
views
1 hour ago by
magicridge
•
0
3
votes
6
replies
725
views
updated 9 hours ago by
poornemaa
•
0
•
written 10 months ago by
peter.berry5
▴
60
0
votes
2
replies
76
views
0
votes
1
reply
45
views
0
votes
1
reply
64
views
0
votes
5
replies
281
views
updated 10 hours ago by
Pierre Lindenbaum
139k
•
written 7 days ago by
devhimd
•
0
3
votes
2
replies
93
views
0
votes
2
replies
95
views
0
votes
2
replies
74
views
12 hours ago by
Fizzah
•
0
2
votes
2
replies
164
views
1
vote
8
replies
287
views
updated 1 hour ago by
Gordon Smyth
★
3.4k
•
written 15 hours ago by
Info.shi
▴
10
1
vote
5
replies
188
views
updated 10 minutes ago by
sbstevenlee
▴
200
•
written 1 day ago by
hafiz.talhamalik
▴
320
0
votes
1
reply
69
views
updated 15 hours ago by
Pierre Lindenbaum
139k
•
written 17 hours ago by
iibrams07
•
0
0
votes
1
reply
60
views
updated 4 hours ago by
lieven.sterck
12k
•
written 19 hours ago by
andres.firrincieli
★
1.8k
0
votes
0
replies
44
views
0
votes
1
reply
105
views
updated 20 hours ago by
Mensur Dlakic
★
14k
•
written 21 hours ago by
baijiangshan9726
•
0
3
votes
2
replies
182
views
4
votes
5
replies
218
views
updated 4 hours ago by
Alex Reynolds
33k
•
written 1 day ago by
Mensur Dlakic
★
14k
0
votes
2
replies
158
views
updated 1 day ago by
Mensur Dlakic
★
14k
•
written 1 day ago by
jiyecec574
•
0
8
votes
5
replies
584
views
6 follow
updated 1 day ago by
Luis Nassar
▴
550
•
written 11 months ago by
Sergio Martínez Cuesta
▴
190
0
votes
0
replies
38
views
1 day ago by
MaxF
▴
90
0
votes
0
replies
45
views
0
votes
8
replies
252
views
0
votes
2
replies
187
views
updated 1 day ago by
Pierre Lindenbaum
139k
•
written 1 day ago by
rio.simon56
•
0
0
votes
2
replies
93
views
1
vote
2
replies
106
views
20 hours ago by
Anh
•
0
0
votes
3
replies
132
views
0
votes
2
replies
131
views
8
votes
11
replies
1.8k
views
3
votes
3
replies
251
views
0
votes
0
replies
55
views
1 day ago by
vevvo
•
0
0
votes
0
replies
40
views
7
votes
6
replies
231
views
1 day ago by
Istvan Albert
89k
0
votes
2
replies
102
views
0
votes
3
replies
139
views
0
votes
2
replies
103
views
2
votes
1
reply
72
views
0
votes
3
replies
329
views
updated 1 day ago by
Dan
•
0
•
written 16 months ago by
xiaokai.li2019
•
0
1
vote
0
replies
44
views
0
votes
2
replies
97
views
updated 1 day ago by
Michael Dondrup
49k
•
written 1 day ago by
shabbas12
•
0
Recent Votes
Recent Locations •
All
Australia, 2 minutes ago
China, 2 minutes ago
United States, 9 minutes ago
South Korea, 10 minutes ago
United States, 17 minutes ago
UC Berkeley, USA/ Shanxi Univ, China, 18 minutes ago
United States, 19 minutes ago
Recent Awards •
All
Scholar to
Pierre Lindenbaum
139k
Popular Question to
biostart
▴
360
Popular Question to
ceruleanivy
▴
30
Popular Question to
Kumar
▴
50
Teacher to
lieven.sterck
12k
Recent Replies
Comment: Applying Machine Learning on vcf file
by
sbstevenlee
▴
200
Great questions! There is a plethora of structural variants in the CYP2D6 gene including gene deletions, duplications, and hybrids (with a …
Answer: Problems in differential expression analysis with edgeR
by
Gordon Smyth
★
3.4k
You've made an error in specifying the comparison to be done. To compare group 2 vs group 1 you need either:
```
design <- model.atrix(~gr…
Comment: MethylDackel Error running on HPC server
by
magicridge
•
0
Wow. Thank you for the quick response. Obviously, I don't even know what I don't know. I will run Samtools and let you know how it goes.
T…
Comment: Will Python Take The Place Of R?
by
Alex Reynolds
33k
Eight years is a lifetime in bioinformatics. That said, R probably still has better visualization options than Python. Plotly is still no r…
Comment: What will the the classic approach is to make pairwise comparisons between th
by
Gordon Smyth
★
3.4k
No, you're wrong. edgeR does not reverse the calculation as you claim. edgeR does the calculation exactly the way you specify. The comparis…
Comment: Will Python Take The Place Of R?
by
'
▴
290
Interesting that in 2021, every one of those 5 points outlined is not only questionable but entirely and flat out wrong. (2, 3, and 4 were …
Comment: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
by
swbarnes2
11k
Nothing "determines" the direction. Some transcripts are forward, some are reverse. You just have to look up the transcript to know how i…
Comment: Download all cases from TCGAbiolinks
by
Amani
•
0
I use this code to download data but i get unicode issue like in pictures here ![unicode issue][1]
How can i solve this problem?
[1]: …
Comment: Will a user #100000 get Tesla Model 3?
by
Dunois
★
1.5k
What's the growth rate--and projected arrival data of the 100,000th user--corrected for spam accounts?
Comment: What is eggnog better than previous annotation in terms of?
by
Dunois
★
1.5k
Isn't `EggNOG` (or at least `eggnog-mapper`) simply doing a sequence search internally anyway?
Comment: Understanding pilon correction on the reference sequence
by
lieven.sterck
12k
It might be that the "fix" is that pilon extended the contig with two bases: a C on either end of the contig.
(technically that would prob…
Answer: What is eggnog better than previous annotation in terms of?
by
lieven.sterck
12k
well, there are two aspects in play. One is the quality of the annotations you get, the other is the quantity . eggnog, or using orthology,…
Answer: What files (fasta, GTF) do I need for RNA seq analysis
by
lieven.sterck
12k
confirmed :)
in a nutshell: there are two approaches you can use: either using genome or transcriptome. When you go for the genome appro…
Comment: SAM Validation Error with CleanSam (Aligment start must be <= reference seq len
by
shpak.max
•
0
I'm using the same Drosophila reference genome for mapping as for GATK, which is why I'm not sure why I'm getting this error message from t…
Traffic: 1297 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6