23 minutes ago by
82101202089
•
0
0
votes
0
replies
9
views
0
votes
0
replies
12
views
49 minutes ago by
soyeon
•
0
0
votes
1
reply
38
views
updated 53 minutes ago by
Mensur Dlakic
★
14k
•
written 3 hours ago by
QAZ
•
0
0
votes
1
reply
38
views
0
votes
0
replies
17
views
2 hours ago by
singh.bioinfo
▴
30
628
votes
157
replies
72k
views
93 follow
0
votes
2
replies
56
views
1 hour ago by
Edmond
•
0
0
votes
1
reply
59
views
0
votes
0
replies
24
views
1
vote
3
replies
138
views
0
votes
1
reply
42
views
updated 5 hours ago by
Kevin Blighe
78k
•
written 6 hours ago by
mdvs
•
0
0
votes
1
reply
52
views
0
votes
0
replies
36
views
0
votes
0
replies
31
views
0
votes
0
replies
28
views
1
vote
0
replies
68
views
2
votes
2
replies
121
views
0
votes
1
reply
79
views
0
votes
2
replies
84
views
9 hours ago by
BlueSky
▴
10
0
votes
0
replies
34
views
5
votes
7
replies
6.4k
views
7 follow
2
votes
7
replies
139
views
0
votes
1
reply
55
views
updated 10 hours ago by
Istvan Albert
90k
•
written 16 hours ago by
PolDE
•
0
0
votes
0
replies
35
views
0
votes
0
replies
69
views
10 hours ago by
Rochelle
•
0
0
votes
2
replies
144
views
updated 11 hours ago by
Istvan Albert
90k
•
written 23 hours ago by
liuhongran
•
0
4
votes
3
replies
96
views
updated 10 hours ago by
Istvan Albert
90k
•
written 11 hours ago by
vpsev3
▴
10
2
votes
0
replies
51
views
updated 11 hours ago by
Istvan Albert
90k
•
written 11 hours ago by
Biostar
290
0
votes
0
replies
27
views
0
votes
2
replies
74
views
0
votes
1
reply
49
views
updated 10 hours ago by
Joe
19k
•
written 12 hours ago by
leventdusunceli98
•
0
0
votes
1
reply
62
views
updated 11 hours ago by
Igor
•
0
•
written 12 hours ago by
Bioinf_Questions
•
0
0
votes
3
replies
97
views
0
votes
0
replies
35
views
13 hours ago by
guliasitu40
▴
90
0
votes
1
reply
58
views
1
vote
1
reply
57
views
2
votes
3
replies
117
views
updated 10 hours ago by
GenoMax
108k
•
written 16 hours ago by
Saumya Gupta
•
0
0
votes
0
replies
33
views
4
votes
6
replies
1.1k
views
0
votes
4
replies
102
views
3
votes
3
replies
1.5k
views
0
votes
0
replies
31
views
15 hours ago by
yosapol.harn
•
0
0
votes
0
replies
52
views
15 hours ago by
zyladagmara
•
0
1
vote
1
reply
74
views
updated 5 hours ago by
WouterDeCoster
46k
•
written 15 hours ago by
BPors
▴
50
0
votes
0
replies
37
views
0
votes
0
replies
33
views
16 hours ago by
Yongjie Zhang
▴
80
0
votes
1
reply
69
views
1
vote
3
replies
107
views
0
votes
1
reply
87
views
updated 9 hours ago by
JC
12k
•
written 16 hours ago by
johnnytam100
▴
100
2
votes
3
replies
202
views
Recent Votes
Recent Locations •
All
USA, 2 minutes ago
Australia, 3 minutes ago
University of Connecticut, 4 minutes ago
United States, 4 minutes ago
Ecuador, 6 minutes ago
Hong Kong, 7 minutes ago
South Korea, 7 minutes ago
Recent Awards •
All
Popular Question to
singh.bioinfo
▴
30
Scholar to
Charles Plessy
★
2.7k
Good Answer to
komal.rathi
★
3.9k
Popular Question to
waqaskhokhar999
▴
120
Popular Question to
ben.kunfang
▴
30
Popular Question to
curious
▴
620
Recent Replies
Answer: PAM substitution score
by
Mensur Dlakic
★
14k
The answers are very easy to find by Googling.
https://en.wikipedia.org/wiki/Point_accepted_mutation
Comment: How to deal with high % of reads mapped to multiple loci on STAR?
by
Simon Ahn
•
0
I really appreciate your help. Here are some specific details.
1. fastq downloaded from SRA: SRP050036 using fasterq-dump (only used SRR16…
Comment: Covarage X not per base coverage. As a whole
by
Edmond
•
0
This answer it does not help. It is the same as the link I provided.
The only thing It approaches to my answer is with bedtools:
bedto…
Answer: Normalize Data in R and Heatmap
by
swbarnes2
11k
The DESeq2 vignette is one place which will tell you how to process your data. Start there.
Answer: Covarage X not per base coverage. As a whole
by
Pierre Lindenbaum
139k
samtools depth -b capture.bed -a in.bam | awk '{N+=int($3);} END {print N/NR;} '
Comment: How to scan NCBI database using Biopython and save information as a fasta file?
by
GenoMax
108k
https://www.biostars.org/u/99423/ : Deleting questions which are solved is not appropriate. Consider accepting the answer (green check mark…
Answer: genebank biopython get /chromosome="22" or /map="22q13.33"
by
Istvan Albert
90k
it is located in the qualifiers field of the feature
from Bio import SeqIO
recs = SeqIO.parse("input.gb", format="genbank…
Comment: How to scan NCBI database using Biopython and save information as a fasta file?
by
Makayla
•
0
Thank you, that worked.
Comment: How to make Q-Q plots for different models at a single chart using R?
by
waqaskhokhar999
▴
120
How we can add colour key as a legend, as we do in ggplot using colour = "column_name"
Answer: How to scan NCBI database using Biopython and save information as a fasta file?
by
GenoMax
108k
Is the image above your own code or simply a screen grab from somewhere (it is always best to actually post code by pasting and using `1010…
Answer: Operon Predict on novel bacterial isolates
by
Kevin Blighe
78k
Hello and good morning, afternoon, or evening,
Rockhopper can do this for you, but starting from the raw FASTQ files: https://cs.wellesl…
Comment: Low quality fast5 files
by
WouterDeCoster
46k
I don't have to point this out for you, but your reads are very short. It may be that the basecaller isn't properly estimating the quality.…
Comment: TMM-Normalization
by
Raheleh
▴
210
Thanks ATpoint, does TMM normalization account for *gene length* in addition to sequencing depth and RNA composition?
Comment: RNA-seq: Sequencing data has two coverages
by
Buffo
★
1.9k
It means that your sample was sequenced twice until they got the coverage that YOU requested. I recommend you to take a look at the read qu…
Traffic: 1930 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6