Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
121,215 results • Page
1 of 2425
Sort: Rank
Rank
Views
Votes
Replies
1
vote
3
replies
85
views
Heatmap of rnaseq data with z-score scale
RNA-seq
updated just now by
swbarnes2
14k • written 4 hours ago by
giovanna
• 0
0
votes
0
replies
22
views
Z-score for scRNA-seq data?
scRNAseq
2 hours ago by
S
• 0
0
votes
0
replies
28
views
OncodriveFML warnings
cancer_driver
selection_analysis
driver_genes
oncodrivefml
4 hours ago by
yahn
▴ 10
0
votes
2
replies
185
views
European Variation Archive submission eva-sub-cli validation failure: "Sample name concordance check"
eva-sub-cli
EuropeanVariationArchive
submission
database
updated 6 hours ago by
Timothee
• 0 • written 1 day ago by
askhat
• 0
837
votes
170
replies
177k
views
112 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 23 days ago by
Biostar
3.5k • written 8.5 years ago by
Istvan Albert
102k
0
votes
0
replies
68
views
Job:
Project Research Scientist-I (Bioinformatics – Next Generation Sequencing Data Analysis) - India
Biology
Computational
Bioinformatics
updated 2 hours ago by
colindaven
7.4k • written 8 hours ago by
Rajunaik Vankudavath
• 0
0
votes
0
replies
59
views
News:
online course: AI for Genomics: from CNNs and LSTMs to TRANSFORMERS
Transformers
CNN
Genomics
LSTMs
AI
11 hours ago by
Physalia-courses
★ 2.6k
0
votes
1
reply
88
views
Anyone familiar with studies on computational neuroscience focused on consciousness, particularly in anatomical areas such as ARAS?
neuroscience
computational
updated 5 hours ago by
Bastien Hervé
6.3k • written 13 hours ago by
Dun
• 0
0
votes
1
reply
80
views
Evaluating Large CRISPR/Cas9 Deletions (~300 kb) in F0 Xenopus Embryos
CRISPR
large
mosaic
Cas12a
F0
deletion
updated 5 hours ago by
GenoMax
151k • written 14 hours ago by
Santex
• 0
2
votes
11
replies
358
views
Trim CDS to ORF
codon
CDS
offset
transcripts
updated 39 minutes ago by
lieven.sterck
15k • written 1 day ago by
jaredbernard
▴ 30
0
votes
1
reply
100
views
Multi-omic trajectory on CITE-Seq data
multiomic
10x
single-cell
transcriptomics
trajectory
updated 9 hours ago by
ATpoint
88k • written 22 hours ago by
firestar
★ 1.7k
10
votes
22
replies
610
views
STAR aligner problem on local laptop
RNA-sequencing
4 hours ago by
Morris_Chair
▴ 370
0
votes
0
replies
102
views
Tool:
Grabstract: Turn complex scientific texts and PDFs into graphical abstracts, scientific posters, journal club slide decks, and more!
visualisation
8 hours ago by
Anand
• 0
3
votes
8
replies
1.2k
views
Mageck RRA is listing negative controls as high fold change in the gene summary
python
crispr
mageck
updated 16 hours ago by
jared.andrews07
★ 18k • written 11 months ago by
liz.b
• 0
0
votes
1
reply
100
views
RNA-seq analysis
STAR
HiSat2
featurecounts
updated 1 day ago by
rfran010
★ 1.5k • written 1 day ago by
SEJAL
• 0
0
votes
0
replies
66
views
CNVs annotation after CNVkit and clinical databases
Annotation
CNVs
clinical_database
1 day ago by
AIMAR
▴ 10
1
vote
2
replies
137
views
Obtaining Q30/Q60 Values from Fastq Files
phred
quality
illumina
rna-seq
updated 1 day ago by
GenoMax
151k • written 1 day ago by
joe_genome
▴ 50
0
votes
1
reply
392
views
Phylogeny aware alignment input
HoSeq
MSA
updated 1 day ago by
zjq6666666
• 0 • written 11 months ago by
Meto
• 0
0
votes
5
replies
203
views
The allele with index 2 is not defined in the REF/ALT columns" error after AF filtering with gnomAD Exome
gnomAD
bcftools
vcf
1 day ago by
erikatatianacs
• 0
0
votes
2
replies
148
views
Drastic drop in RNA-seq read mapping rate when disabling gaps in Bowtie2
bowtie2
updated 23 hours ago by
GenoMax
151k • written 1 day ago by
triplee0305
▴ 10
2
votes
10
replies
390
views
RNASeq bulk transcriptomics analysis
RNASeq
Trimgalore
genecounts
STAR
fastqc
updated 4 hours ago by
lieven.sterck
15k • written 1 day ago by
rajdeepboral00
▴ 60
0
votes
1
reply
116
views
SSL and Syntax Errors when using fasterq-dump (SRA Toolkit)
sratoolkit
updated 1 day ago by
GenoMax
151k • written 1 day ago by
QURROTU AINI
• 0
0
votes
2
replies
162
views
Download GenomicSEM reference file
GenomicSEM
updated 1 day ago by
1769mkc
★ 1.3k • written 1 day ago by
zhangmyharper
• 0
9
votes
10
replies
385
views
How common is it to split fastq files prior to bwa mem to increase parallelization?
mem
bwa
alignment
updated 1 day ago by
ATpoint
88k • written 1 day ago by
curious
▴ 880
0
votes
0
replies
104
views
News:
UCSC Xena Webinar Series: Visualize and Analyze Bulk Sequencing Data on Xena
visualization
genomics
cancer
1 day ago by
Mary Goldman
• 0
0
votes
0
replies
106
views
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
normalization
deseq2
host-pathogen
rna-seq
1 day ago by
r-ninja
▴ 20
0
votes
0
replies
106
views
Does vg stats support gaf file?
vg
1 day ago by
Wang Cong
▴ 20
1
vote
1
reply
146
views
Longest Protein per Gene from gpff file
Protein
gpff
updated 2 days ago by
lieven.sterck
15k • written 2 days ago by
reza
▴ 300
2
votes
4
replies
652
views
Modify read groups in BAM file
samtools
BAM
picard
DRAGEN
updated 2 days ago by
jkbonfield
★ 1.3k • written 6 weeks ago by
Alex
• 0
2
votes
1
reply
156
views
Integration of NanoString CosMx FOVs
Spatial
transcriptomics
updated 2 days ago by
Bastien Hervé
6.3k • written 2 days ago by
solo.albif
• 0
0
votes
1
reply
164
views
Bulk RNA-seq differential gene expression analysis on haplotype‑resolved diploid plant assembly
RNA-seq
updated 23 hours ago by
rfran010
★ 1.5k • written 2 days ago by
Zephy
• 0
0
votes
1
reply
364
views
News:
9th Berlin Summer School in NGS Data Analysis 2025 (June 30 - July 4, 2025) -- SUMMER IN BERLIN --
Workshop
RNA-Seq
transcriptomics
VariantCalling
DNA-Seq
2 days ago by
ecSeq Bioinformatics
▴ 20
0
votes
0
replies
136
views
q-value threshold for omics data when performing univariate cox analysis
MachineLearning
q-value
Cox
FDR
omics
2 days ago by
Yugan Gogul Muthukumar
▴ 10
6
votes
8
replies
452
views
Cross-species differential gene expression, finding orthologs
orthologs
xSpecies
stringtie
Differential-expression
2 days ago by
fe94
▴ 10
0
votes
3
replies
262
views
Unexpected negative correlation between gene-length and counts
rna-seq
bias
normalisation
updated 23 hours ago by
rfran010
★ 1.5k • written 2 days ago by
Ben
▴ 20
0
votes
1
reply
206
views
Perturb seq
perturbseq
updated 3 days ago by
GenoMax
151k • written 3 days ago by
shlo12
• 0
4
votes
4
replies
1.5k
views
Where can I find somatic whole-genome or exome FASTQ files (from tumor samples) with validated variants and corresponding VCFs publicly available?
fastq
NGS
pipeline
INDELs
SNVs
updated 3 days ago by
GenoMax
151k • written 6 days ago by
aaaaaaa
• 0
1
vote
1
reply
263
views
How important are allele fractions when calling variants?
GATK
bacteria
BCFTools
updated 2 days ago by
Jeremy Leipzig
23k • written 3 days ago by
andean
• 0
0
votes
0
replies
256
views
Job:
Two postdoctoral positions in generative AI and blood-based cancer detection, Aarhus University, Denmark
nucleosomes
post_doc
cancer_detection
generativeAI
bioinformatics
2 days ago by
Jakob Skou
• 0
0
votes
2
replies
1.6k
views
Analysing Problem Seen In MEGA X
Alignment
MEGAX
Muscle
updated 4 days ago by
humarafique.1234
• 0 • written 3.6 years ago by
ankurhalder116
• 0
0
votes
0
replies
251
views
discrepancies in ORA results between g:Profiler (gost) and clusterProfiler (enrichGO)
Analysis
Enrichment
written 4 days ago by
BobMarleyEnrichment
• 0
3
votes
2
replies
351
views
DESeq2 outliers-should I be concerned?
deseq2
updated 2 days ago by
ATpoint
88k • written 4 days ago by
bioinfo
▴ 150
1
vote
2
replies
400
views
Trimmomatic command
STAR
RNASeq
Trimmomatic
updated 4 days ago by
swbarnes2
14k • written 6 days ago by
rajdeepboral00
▴ 60
1
vote
1
reply
305
views
Blog:
Setaria Pan-Genome Variation: Unraveling the Story of Domestication
pan-genome
updated 5 days ago by
cmdcolin
★ 4.2k • written 6 days ago by
Novogene
▴ 510
4
votes
9
replies
1.1k
views
Facing issue with output of nextflow pipeline
output
nextflow
fastqc
issue
updated 3 days ago by
colindaven
7.4k • written 7 weeks ago by
harsh
▴ 20
6
votes
2
replies
371
views
Forum:
Pie Charts: to use or not to use
pie-chart
graphs
updated 5 days ago by
Joe
22k • written 5 days ago by
littlebioinformatician
• 0
1
vote
1
reply
266
views
Minimum Number of Cells for Downstream Analysis after subsetting a particular cell type (scRNAseq)?
cell
single
updated 5 days ago by
ATpoint
88k • written 5 days ago by
Tundup
▴ 10
0
votes
3
replies
555
views
Discrepancy Between Reported Nitrogen-Fixing Ability and Genomic Evidence in Acinetobacter guillouiae
nif
NCBI_genome_database
Acinetobacter_guillouiae
Nitrogenase
Nitrogen_fixation
updated 5 days ago by
GenoMax
151k • written 5 days ago by
Nafi
• 0
0
votes
1
reply
272
views
Target prediction
protien
prediction
Target
updated 5 days ago by
dthorbur
★ 3.0k • written 5 days ago by
Samprath
• 0
6
votes
12
replies
874
views
Heatmap of a transformed deseq object with pheatmap
deseq2
pheatmap
5 days ago by
caroline.zanchi
• 0
121,215 results • Page
1 of 2425
Recent Votes
Answer: Heatmap of rnaseq data with z-score scale
Comment: STAR aligner problem on local laptop
What are chromatin states ?
Comment: STAR aligner problem on local laptop
Comment: BCL files conversion to FASTQ without SampleSheet.csv
Comment: STAR aligner problem on local laptop
Comment: STAR aligner problem on local laptop
Recent Locations •
All
United States,
6 minutes ago
United States,
10 minutes ago
Whitefish, MT,
12 minutes ago
Ghent & Brussels, Belgium,
14 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
21 minutes ago
Pakistan,
22 minutes ago
United Kingdom,
22 minutes ago
Recent Awards •
All
Popular Question
to
cmdcolin
★ 4.2k
Popular Question
to
ben.kunfang
▴ 30
Popular Question
to
noodlejackson
▴ 40
Scholar
to
Bastien Hervé
6.3k
Popular Question
to
solo.albif
• 0
Popular Question
to
analyst
▴ 60
Scholar
to
jaredbernard
▴ 30
Recent Replies
Answer: Heatmap of rnaseq data with z-score scale
by
swbarnes2
14k
There isn't really a problem. Your data is what it is, but I think adding data from a totally different data set is a bad idea. RNASeq is…
Comment: Combining scRNA-seq datasets that have been processed differently
by
S
• 0
Thank you for your input! And yes I agree with you in terms of the difference in processing, though the workflow was pretty standard except…
Answer: Heatmap of rnaseq data with z-score scale
by
Basti
★ 2.1k
The z-score is the raw score minus the mean of all samples, divided by the standard deviation so if you add samples, then you change the z-…
Comment: Heatmap of rnaseq data with z-score scale
by
giovanna
• 0
![Figure1][1] ![Figure2][2] [1]: /media/images/ccd91222-df0a-4c33-984f-61fb94dc [2]: /media/images/50856040-0bf9-4389-85da-7ae…
Comment: STAR aligner problem on local laptop
by
Morris_Chair
▴ 370
Thanks to everyone, I appreciate the support :)
Comment: STAR aligner problem on local laptop
by
GenoMax
151k
Confirmed that the `STAR` executable provided by `conda` (as of today) is not able to align the data on a M3 Mac though it seems to produce…
Comment: Trim CDS to ORF
by
lieven.sterck
15k
OK, thanks. Did maker (or Braker, or ... the annotation tool you used) not provide the corresponding CDS file of the annotations then? Do …
Comment: building snpeff database for plant
by
lieven.sterck
15k
goh, if there are not too many of those it could be fine indeed. however, I see that you nearly got 50% of 'Not found' ones, that sounds t…
Comment: RNASeq bulk transcriptomics analysis
by
lieven.sterck
15k
Aha, I suspected something like this already :) : as you have 107653608 and only have 3098536 unmapped reads, you actually have a mapping …
Comment: Evaluating Large CRISPR/Cas9 Deletions (~300 kb) in F0 Xenopus Embryos
by
GenoMax
151k
Nanopore sequencing is worth trying. You should be able to see the deletion. Note: There are/were targeted kits available to do this http…
Comment: STAR aligner problem on local laptop
by
Morris_Chair
▴ 370
With conda I have no problem installing STAR but I have the problem of the empty BAM files. Then I have decided to compile it from source…
Comment: STAR aligner problem on local laptop
by
GenoMax
151k
In case this suggestion does not work try the solution posted here: https://github.com/alexdobin/STAR/issues/1265#issuecomment-1595135934
Comment: STAR aligner problem on local laptop
by
GenoMax
151k
> With conda there is no problem Then why are you trying to compile locally. Are you expecting to get more (performance) out of a locally …
Comment: STAR aligner problem on local laptop
by
dsull
★ 7.6k
OK, you need to compile add `CXXFLAGS_SIMD="-march=native"` at the end of your make command.
Comment: Trim CDS to ORF
by
1769mkc
★ 1.3k
is this chatgpt solution?
Traffic: 12548 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6