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(Closed) what is the difference between a .phased.vcf.gz file and a .dose.vcf.gz file
snp sequencing written 4 hours ago by tinyskinn • 0
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8
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Platypus install - build problems
ubuntu build platypus written 31 minutes ago by tts.pqs • 0
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103
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How to extract complete data for specific SNPs (say about 10 of them)
sequencing snp genotyping written 11 hours ago by tinyskinn • 0
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1
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416
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1
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Quantitative information for TF-gene expression
gene genome chip-seq rna-seq written 11 months ago by Natasha • 30 • updated 45 minutes ago by Biostar ♦♦ 20
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Blog: How to perform SOAPdenovo for many samples
assembly blog written 18 hours ago by michaelijesse • 0
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How to identify which SNPs in my dataset are genome wide significant
R unix manhattan plot written 1 hour ago by sean.oscineir2 • 0 • updated 1 hour ago by h.mon ♦ 21k
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measure relative abundance from rna-seq
meta-transcriptomics rna-seq written 1 hour ago by bitpir • 100
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1
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48
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1
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mean Tajima's D value
tajima's d snp written 3 days ago by sonia.olaechea • 20 • updated 1 hour ago by pltbiotech_tkarthi • 40
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20
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Jupyter Notebook reading in data
R rna-seq written 2 hours ago by Biostars • 0
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17
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ctsGE: Matrix Error
ctsge rstudio rna-seq written 2 hours ago by anokhi1997 • 0
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1
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Create a pseudo-haploid fasta file based genotype calls for an individual (vcf file)
vcf assembly sequence snp written 6 hours ago by Jautis • 270 • updated 2 hours ago by Len Trigg • 1.2k
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News: Powerful and Intuitive Gene Expression Visualization Tools to Interpret Biological Signals
partek news gene expression visualization rna-seq written 3 hours ago by kgosche • 0
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1
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66
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1
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Paired-End Data Only Has One Read Per Spot
drop-seq written 3 days ago by lemmonquiche • 0 • updated 3 hours ago by jayeshkumarsundaram • 0
383
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19
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30k
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177 follow
19
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 23 months ago by Istvan Albert ♦♦ 78k • updated 3 hours ago by RamRS ♦ 19k
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1
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78
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1
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right genomic coordinate of each gene
gene next-gen written 9 hours ago by alireza346 • 0 • updated 3 hours ago by lieven.sterck • 3.0k
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21
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Tools for generation 3D molecule structure from 2D
3d openbabel written 3 hours ago by Katya • 0
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2
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39
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2
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Problem: "Pair-end" reads scRNA seq data (Drop-seq)
next-gen alignment rna-seq written 4 hours ago by jayeshkumarsundaram • 0 • updated 3 hours ago by paulranum11 • 20
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1
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27
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1
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The order of part processions of RNA-Seq data
rna-seq written 4 hours ago by 1106518271 • 30 • updated 3 hours ago by WouterDeCoster ♦ 33k
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33
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dn/ds ka/ks in cancer genes
genome ka/ks populationgenetics dnds dn/ds written 4 hours ago by mariamcurbelo2061 • 0
3
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1
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34
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1
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bam_sort_core problem when bam files be processed by samtools
samtools rna-seq written 5 hours ago by 1106518271 • 30 • updated 4 hours ago by Istvan Albert ♦♦ 78k
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758
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1
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ComBat on TCGA RNAseq data generates all NAN
tcga combat written 16 months ago by mforde84 • 1.2k • updated 5 hours ago by coyoung • 0
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Overlapping SNPs in R
R snp written 5 hours ago by alexandramirandaaa • 0
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28
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Plink Genotype Means for --Linear and --Logistic Plink options
plink written 5 hours ago by bg1116 • 0
2
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1
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48
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1
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WGCNA for different comparisons
wgcna rna-seq written 3 days ago by user56 • 10
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57
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Batch rename RefSeq assembly for the corresponding organism name
genome assembly written 3 days ago by joaobotelho9 • 0
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1
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1
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Correlation between methylation (450K) and gene expression (RNA-Seq)
450k rna-seq written 3.0 years ago by Nicolas Rosewick ♦ 6.9k • updated 6 hours ago by Charles Warden ♦ 5.6k
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112
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Map plasmodb gene ID to pdb crystal structure if exist
gene pdb id plasmodb structure written 8 weeks ago by db4 • 0 • updated 6 hours ago by Biostar ♦♦ 20
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37
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What kind of read counts of RNA-seq should be used in machine learning models?
machine learning rna-seq counts written 6 hours ago by magicpants • 20
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30
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Differential expression using Scran batch corrected data
single-cell batch correction scran rna-seq written 7 hours ago by baldissera152 • 0
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SciClone works with 1d clustering, but not 2d?
sciclone written 7 hours ago by wisty • 0
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