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TopHat2 high discordant alignment percentage?
alignment rna-seq written 13 minutes ago by edsouza • 0
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1
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89
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1
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bam-readcount not finding reference in bam file
bam bam-readcount written 21 hours ago by obuzko • 0 • updated 39 minutes ago by WouterDeCoster ♦ 30k
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8 follow
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Forum: biostar.slack.com: Chat for the biostars community
chat news forum written 3 months ago by Devon Ryan ♦ 81k • updated 47 minutes ago by WouterDeCoster ♦ 30k
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1
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Appending sequence decoys and virus sequences to reference genome (GRCh38)
genome assembly alignment written 2 hours ago by newbio17 • 0 • updated 50 minutes ago by WouterDeCoster ♦ 30k
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1
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Obiconvert produces empty EcoPCR database...why?
fasta obiconvert ecopcr obitools written 3 hours ago by mingala • 0 • updated 1 hour ago by h.mon ♦ 16k
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1
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32
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gene expression correlation, FPKM, WGCNA
bioinformatics rna-seq R written 1 hour ago by Reza • 0
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1
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42
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1
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Finding orientation of single-ended reads (R or F)
sequence assembly next-gen rna-seq written 2 hours ago by Moneeb Bajwa • 0 • updated 1 hour ago by h.mon ♦ 16k
361
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16
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25k
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166 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 19 months ago by Istvan Albert ♦♦ 77k • updated 1 hour ago by Vijay Lakhujani ♦ 2.7k
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Running vcf2maf on snpeff-annotated vcfs
snpeff vcf2maf written 1 day ago by becky3.a • 0
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mysql-8.0.11 parameter for mysql 5.1.7
gene assembly genome written 3 hours ago by mosharrofgeb • 40 • updated 3 hours ago by genomax ♦ 51k
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How to install LigandScout software on Linux?
ligandscout alignment linux written 3 hours ago by edjan.silva • 0 • updated 3 hours ago by h.mon ♦ 16k
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34
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strelka2 vs strelka1
snp callers written 3 hours ago by sbilobram • 10
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49
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1
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Rstudio like IDE for perl
perl written 3 hours ago by MAPK • 1.2k • updated 3 hours ago by JC ♦ 6.8k
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111
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Quantifying overlapping RNA-seq paired-end reads
rna-seq written 5 weeks ago by biofalconch • 370 • updated 3 hours ago by liruiradiant • 10
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51
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Transcript features and annotations
alignment transcript written 6 days ago by Sergio Martínez Cuesta • 50 • updated 4 hours ago by Biostar ♦♦ 20
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61
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1
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goatools: how to write out (or draw) the entire GO hierarchy for all genes from one species (human)?
goatools go written 7 days ago by dp • 10 • updated 4 hours ago by dvklopfenstein • 0
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57
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1
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To reassemble Illumina and PacBio, or just upgrade previous assembly with PacBio?
genome assembly pacbio illumina written 5 hours ago by msobol • 0 • updated 5 hours ago by h.mon ♦ 16k
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biological fluoresence data supervised machine learning
fluorescence machine learning segmentation written 5 hours ago by t.m.hietpas • 0
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43
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SNP Prioritization Tool
gwas snp written 5 hours ago by Rick P • 0
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1
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41
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1
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HiCUP pipeline, hicup_digester script, ApoI genome digestion
genome software error written 8 hours ago by Faylasoof • 0 • updated 6 hours ago by ATpoint • 5.5k
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1
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61
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5 follow
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Quick and easy way to get alignment stats from many SAM/BAM files?
alignment rna-seq written 6 hours ago by goodez • 240
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6 follow
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How to perform quality check and assembly using pacbio sequel data?
assembly qc pacbio written 1 day ago by Vijay Lakhujani ♦ 2.7k
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Why is number of geneset present in MSigDB C2:CP:KEGG geneset different from the original KEGG pathway?
gsea written 6 hours ago by mariet1051 • 0
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49
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Retrieving sequences from Ensembl Archive
ensembl dna sequence ensembl archive written 7 hours ago by biostR • 0 • updated 7 hours ago by Ram ♦ 16k
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35
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differences in covered regions in exome and whole genome sequencing
genome-sequencing wgs exome-sequencing wes written 7 hours ago by miaowzai • 60
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how to evaluate coverage at a regions of interest and generate specificity, sensitivity and PPV for that region?
dnaseq specificity sensitivity snp ppv written 7 hours ago by bioinforesearchquestions • 140
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3
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145
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6 follow
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dna compression cod
dna compression written 1 day ago by nafiseramezanipoor • 0 • updated 7 hours ago by Alex Reynolds ♦ 24k
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Trinity Error encountered with thread, terminated abnormally, not all specified records have been retrieved.
trinity normalization rna-seq jellyfish written 7 hours ago by sierraallinone • 0 • updated 7 hours ago by h.mon ♦ 16k
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NCBI GEO/GSM/SRA conventions: Is raw data a part of the SRA or a supplementary file?
next-gen rna-seq written 7 hours ago by abe • 0
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47
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Extract specific variants from binary plink files
gene plink snp written 8 hours ago by o.ajnakina • 0 • updated 8 hours ago by kakukeshi • 20
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