8 minutes ago by
hlebnikovdaniil
•
0
0
votes
0
replies
5
views
0
votes
1
reply
44
views
updated 18 minutes ago by
Philipp Bayer
7.9k
•
written 3 hours ago by
SushiRoll
▴
110
0
votes
0
replies
15
views
0
votes
0
replies
14
views
0
votes
0
replies
8
views
1 hour ago by
carlopecoraro2
★
2.4k
762
votes
164
replies
123k
views
106 follow
updated 5 hours ago by
Biostar
2.0k
•
written 6.8 years ago by
Istvan Albert
98k
1
vote
8
replies
138
views
39 minutes ago by
mbuenner
•
0
2
votes
4
replies
295
views
0
votes
1
reply
78
views
updated 1 hour ago by
Kevin Blighe
86k
•
written 6 hours ago by
Maxine
▴
30
0
votes
0
replies
37
views
0
votes
0
replies
45
views
17
votes
11
replies
13k
views
9 follow
written 6.8 years ago by
ccag
▴
60
0
votes
2
replies
68
views
updated 1 hour ago by
Basti
★
1.7k
•
written 6 hours ago by
jabbari.parnian
▴
30
1
vote
1
reply
77
views
27
votes
16
replies
29k
views
11 follow
updated 12 hours ago by
alejandrogzi
▴
40
•
written 14.0 years ago by
Istvan Albert
98k
1
vote
1
reply
198
views
0
votes
1
reply
80
views
0
votes
0
replies
55
views
14 hours ago by
qudrat.nii
•
0
0
votes
1
reply
92
views
15 hours ago by
睿紘
•
0
0
votes
4
replies
161
views
3
votes
2
replies
166
views
1
vote
2
replies
297
views
0
votes
0
replies
50
views
17 hours ago by
v.berriosfarias
▴
130
0
votes
0
replies
70
views
17 hours ago by
avelarbio46
▴
30
0
votes
9
replies
283
views
0
votes
1
reply
93
views
0
votes
0
replies
68
views
updated 17 hours ago by
Ram
40k
•
written 18 hours ago by
carlopecoraro2
★
2.4k
3
votes
2
replies
116
views
18 hours ago by
synat.keam
▴
80
0
votes
2
replies
136
views
updated 20 hours ago by
benformatics
3.8k
•
written 21 hours ago by
paulaotero.sanchez
•
0
0
votes
1
reply
466
views
updated 16 hours ago by
Ram
40k
•
written 5 months ago by
rocio.castellanos
•
0
3
votes
6
replies
212
views
0
votes
2
replies
165
views
0
votes
11
replies
328
views
51 minutes ago by
langziv
▴
50
0
votes
2
replies
135
views
0
votes
0
replies
69
views
updated 21 hours ago by
Ram
40k
•
written 23 hours ago by
ayaosama2111
▴
10
0
votes
0
replies
69
views
updated 21 hours ago by
Ram
40k
•
written 1 day ago by
Bioinfonext
▴
440
2
votes
5
replies
372
views
written 5 days ago by
Begonia_pavonina
▴
110
21
votes
7
replies
10k
views
updated 1 day ago by
Gennady Khvorykh
▴
100
•
written 7.5 years ago by
Sukhi Singh
11k
0
votes
1
reply
236
views
0
votes
1
reply
118
views
updated 1 day ago by
Pierre Lindenbaum
157k
•
written 1 day ago by
Athena
•
0
0
votes
0
replies
79
views
0
votes
1
reply
131
views
0
votes
2
replies
162
views
18 hours ago by
jachimowicz9002
▴
10
0
votes
2
replies
190
views
5
votes
8
replies
308
views
updated 1 day ago by
james.hawley
▴
40
•
written 1 day ago by
Dan
▴
160
0
votes
4
replies
206
views
4
votes
10
replies
357
views
0
votes
3
replies
269
views
2
votes
6
replies
280
views
3
votes
3
replies
311
views
Recent Votes
Recent Locations •
All
Spain, just now
Stony Brook University, NY, 1 minute ago
Ireland, 2 minutes ago
United States, 2 minutes ago
United Kingdom, 3 minutes ago
United States, 4 minutes ago
UK, 6 minutes ago
Recent Awards •
All
Popular Question to
Vasu
▴
730
Popular Question to
hemantcnaik
•
0
Popular Question to
mfro
•
0
Popular Question to
safiq713
▴
10
Scholar to
antonioggsousa
2.9k
Popular Question to
chi.delta
▴
40
Popular Question to
Marco Pannone
▴
760
Recent Replies
Comment: Need help to setup a PGS pipeline
by
GenoMax
135k
You will need to provide at least one way for people to contact you. Please edit the post and add that information.
Answer: Kraken2 is falsely assigning Klebsiella
by
Philipp Bayer
7.9k
I've also had false positive hits with Kraken, usually a --confidence of 0.1 gets rid of *most* of them.
This paper deals a bit with the …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads
by
langziv
▴
50
I reduced the data to 50x with seqtk and got the same percentage.
What do you think about combining the assembly so that it will be a gen…
Comment: 18S taxonomy assignment SILVA database formatting
by
GenoMax
135k
https://www.biostars.org/u/96c44ed8/ : Please take a moment to properly format the original post. Highlighting text and then using `101010`…
Comment: 18S taxonomy assignment SILVA database formatting
by
mbuenner
•
0
To me it seems consistent in the fungi. I will filter for the Fungi.
So you helped me a lot actually! Thank you!
Comment: tximport error: vroom
by
Kevin Blighe
86k
Cross-posted: https://support.bioconductor.org/p/9154550/
Comment: 18S taxonomy assignment SILVA database formatting
by
antonioggsousa
2.9k
I understand the issue, but I do not have an easy fix.
The problem is that some sequences have different levels of taxonomic levels. For …
Comment: Error in checkFullRank(modelMatrix) :
by
Basti
★
1.7k
Apart from the response below, your design is strange. Why did you want to adjust for sample if you want to compare the expression between …
Comment: 18S taxonomy assignment SILVA database formatting
by
mbuenner
•
0
Changing it a bit to
`$ awk 'BEGIN{FS=";"; OFS=";"} /^>/ { print $4,$5,$6,$7,$8;$9;$10; next; }; { print; }' SILVA_132_taxonomy_assignmen…
Answer: 18S taxonomy assignment SILVA database formatting
by
antonioggsousa
2.9k
I'm not an expert on `awk`, but I tried the following and it seems to work. Instead of using the original downloaded file, give your latest…
Comment: 18S taxonomy assignment SILVA database formatting
by
mbuenner
•
0
Thank you for editing the post and for your answer.
Sadly, the linked formatted database does not contain Fungi, e.g. when I grep 'Fungi'…
Comment: 18S taxonomy assignment SILVA database formatting
by
antonioggsousa
2.9k
Please, whenever you need to add more information, just edit your original post and do not add answers below unless you found the solution …
Comment: Clustalo failing to complete multiple sequence alignments
by
saamhasan55
▴
10
Hi, I know this is an old thread, but I am encountering a similar problem. I am trying to do an msa for the cds sequences of 5 bumblebee sp…
Comment: 18S taxonomy assignment SILVA database formatting
by
antonioggsousa
2.9k
Hi!
Please share first with us an example how the data looks like, the command-line you're running and the problem that you're getting. If…
Traffic: 2148 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6