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Forum: How do you organize sequence data (FASTQs)?
forum rna-seq sequencing written 1 hour ago by Daniel E Cook • 170 • updated 6 minutes ago by Pierre Lindenbaum ♦ 106k
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infer top level go category from GO:ID
gene ontology eggnog-mapper go written 2 days ago by Carambakaracho • 110 • updated 24 minutes ago by Vijay Lakhujani • 1.9k
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Calculation of Mentha Score
gene mentha written 52 minutes ago by miglanivarnika.26 • 10
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Need help in selecting the correct output file from miRDeep2?
mirbase mirdeep2 rna-seq mirna written 6 weeks ago by bioinforesearchquestions • 120
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Hybrid assembly using MinION data + correction with Illumina. Which strategy to adopt ?
assembly written 1 hour ago by lagartija • 0
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using awk to extract a specific pattern
gff awk extract parsing written 2 hours ago by Toto26 • 0 • updated 1 hour ago by cpad0112 • 4.4k
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News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
news snps rna-seq training written 1 hour ago by AABI • 90
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Display full information about taxa instead of staxids in BLASTn
taxonomy genomic blast written 2 hours ago by danilo.tatoni • 30
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5 follow
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How to get the total genic and intergenic length of a chromosome?
length genic intergenic written 4 hours ago by Zee_S • 0 • updated 2 hours ago by Damian Kao ♦ 14k
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How to normalize the bam files for RNA-Seq samples for visualization
normalization rna-seq visualize written 2 hours ago by wangdp123 • 90
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150 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 16 months ago by Istvan Albert ♦♦ 76k • updated 2 hours ago by ashakoor • 0
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Is there a gold standard for ancestral reconstruction?
gene evolution phylogenetics protein written 20 hours ago by chahatupretiiitk • 40
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simulation for genetic architecture using GBLUP
software next-gen population genetics written 3 hours ago by bha • 10
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5 follow
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Job: Open positions at the Center for Molecular Oncology, MSKCC, New York
cancer python job sequencing R genetics written 6 months ago by Cyriac Kandoth ♦ 4.9k
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How To Create The .Legend And .Phase Files For Gwas Imputation When Using Mach
gwas imputation plink written 4.7 years ago by mandar.bobade60 • 80 • updated 3 hours ago by moushengxu • 300
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highlighting specific genes (from a user-supplied list) in a Volcano plot in R
R deseq2 volcano plot written 4 hours ago by Eskimo • 50
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1
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Installing blasr with make failed
install blasr written 4 hours ago by 1348988193 • 0 • updated 4 hours ago by WouterDeCoster ♦ 27k
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Defining transcript direction from sequencing
rna-seq sequencing written 15 hours ago by MarVi • 0
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detecting insertion sites of transgene in mouse genome
transgene wgs insertion blast written 7 hours ago by Assa Yeroslaviz • 1.1k • updated 5 hours ago by Carambakaracho • 110
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Code for DEG analysis using Ballgown
ballgown stattest ngs rna-seq written 5 weeks ago by ag1805x • 80 • updated 5 hours ago by Vijay Lakhujani • 1.9k
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Retrieve promoter sequences of all human genes
sequence written 5 hours ago by JJ • 170
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Plotting multiple signal files against a single genomic region
deeptools chip-seq rna-seq written 5 weeks ago by keller.mckowen • 10 • updated 5 hours ago by Biostar ♦♦ 20
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Where can you find whole genome SNP map data for dog genome?
data snp written 14 hours ago by kiki9823kimo • 0 • updated 5 hours ago by genomax ♦ 46k
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bedtools getfasta (how to get only cds coding sequence)
mac fasta gff written 6 hours ago by benjamin • 0
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find overlapping sequences and report min start and max end positions
R next-gen sequence rna-seq written 6 hours ago by onkarnath89 • 0 • updated 6 hours ago by genomax ♦ 46k
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Java Exception in Running Trimmomatic software
software error rna-seq written 9 hours ago by modarzi • 0 • updated 6 hours ago by genomax ♦ 46k
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423
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Difference in number of peaks called
macs2 chip-seq peakcalling written 9 months ago by anu014 • 140 • updated 6 hours ago by colindaven • 600
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How can i get bovine50k HMM file for penncnv
hmm file cnv analysis snp written 6 hours ago by Bhavya • 0 • updated 6 hours ago by WouterDeCoster ♦ 27k
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Are there any GNU parallel or similar Shell/Bash code examples on how to run Snap and BWA aligners on a batch of paired .fastq files?
snap parallel shell gnu bwa written 7 hours ago by england_bioinformatics_team • 10 • updated 6 hours ago by ATpoint • 3.5k
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Are there any working GNU parallel or similar Shell code examples on how to run Pilon, Prokka, VT and Snpeff tools on a batch of input files?
shell parallel snpeff gnu prokka written 7 hours ago by england_bioinformatics_team • 10 • updated 6 hours ago by jrj.healey • 3.8k
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