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120,730 results • Page
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phylogenic analysis
biotechnology
biologist
Bioinformatics
computational
updated 1 hour ago by
dthorbur
★ 2.9k • written 5 hours ago by
uttkarsh
• 0
0
votes
0
replies
26
views
Per Base Sequence Content FastQC
quality
control
RNA-seq
2 hours ago by
Ariadna
▴ 20
0
votes
0
replies
28
views
Chrom3D
chrom3d
interchromosomal
genome
model
3 hours ago by
desptsp
• 0
0
votes
1
reply
44
views
Scanpy use with reticulate in R : var_group_positions argument set up
R
Reticulate
Scanpy
2 hours ago by
ZheFrench
▴ 590
0
votes
2
replies
67
views
CPTAC Data analysis
CPTAC
proteomics
1 hour ago by
jain72744
▴ 10
0
votes
0
replies
54
views
Seeking Advice on Handling Multiple Datasets for Differential Analysis in Transcriptomics
Data-Integration
Differential-Analysis
Transcriptomics
Data-Normalization
3 hours ago by
Riley J
• 0
835
votes
169
replies
170k
views
110 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 6 months ago by
Biostar
3.4k • written 8.3 years ago by
Istvan Albert
102k
78
votes
13
replies
41k
views
10 follow
How Can I Get The Human Chromosome Centromere Position And Chromosome Length In Grch37/Hg19
position
ucsc
updated 6 hours ago by
Helix
▴ 20 • written 14.5 years ago by
Jdk
▴ 260
0
votes
3
replies
98
views
How to Process Multiple SRRs for the Same BioSample ?
GEO
RNA-seq
NCBI
miRNAs
RNA
updated 6 hours ago by
GenoMax
150k • written 7 hours ago by
omicon
• 0
0
votes
3
replies
98
views
Methylation cpg probes annotation
annotation
methylation
cpg
TCGA
updated 2 hours ago by
GenoMax
150k • written 7 hours ago by
jain72744
▴ 10
1
vote
2
replies
217
views
How to convert .ab1 to fastq
Fastq
updated 9 hours ago by
size_t
▴ 120 • written 2 days ago by
dr.suvarnakapale
• 0
1
vote
3
replies
115
views
Efficient Gene Prediction on Large Eukaryotic Genomes
tools
prediction
gene
updated 4 hours ago by
colindaven
7.3k • written 9 hours ago by
Shuo
• 0
0
votes
1
reply
69
views
How to deal with missing annotations in RNASeq data?
eggnogmapper
RNASeq
updated 1 hour ago by
dthorbur
★ 2.9k • written 9 hours ago by
v.berriosfarias
▴ 140
0
votes
1
reply
124
views
PPI Network Analysis of Virulence Genes in Morganella morganii Using STRING Database
PPI
STRING
updated 11 hours ago by
Mensur Dlakic
★ 29k • written 1 day ago by
bioinfo_enthusiast
• 0
0
votes
1
reply
71
views
Why protein sequence from AUGUSTUS can't find in blast
genome
AUGUSTUS
galaxy
annotation
updated 2 hours ago by
dariober
15k • written 12 hours ago by
Jl
• 0
0
votes
1
reply
97
views
Is there too little variation to detect meaningful gene changes?
DESEQ
updated 10 hours ago by
karl.stamm
4.1k • written 14 hours ago by
Megan
▴ 50
1
vote
2
replies
102
views
How to make amazing UMAP to spatialPlot GIF
umap
spatial
1 hour ago by
noodlejackson
▴ 40
0
votes
0
replies
68
views
Software for visualizing mass spectromety spectra
MS
Mass
Spectrometry
15 hours ago by
emalekos
▴ 40
0
votes
1
reply
103
views
News:
Feedback Wanted: GenAnalyzer - Web App for Protein Sequence Analysis & Mutation Detection
feedback
tool
updated 19 hours ago by
GenoMax
150k • written 20 hours ago by
genanalyzer24
• 0
1
vote
1
reply
112
views
Detecting Aneuploidy from Bulk RNA-Seq Data
Aneuploidy
RNA-Seq
updated 3 hours ago by
ATpoint
87k • written 22 hours ago by
bioinfo1990
• 0
0
votes
0
replies
82
views
Recommendations for Reference-guided de novo assembly assembly approaches or pipelines?
ont
assembly
wgs
nanopore
genomics
1 day ago by
Mark
▴ 30
2
votes
1
reply
893
views
How to perform PPI network analysis in STRING for newly sequenced bacterial genome ?
Proteomics
cytoscape
network
STRING
updated 1 day ago by
bioinfo_enthusiast
• 0 • written 3.8 years ago by
Kumar
▴ 120
0
votes
0
replies
94
views
GSA genome studio call rate calculation issues
Genome
GSA
studio
1 day ago by
1769mkc
★ 1.2k
0
votes
2
replies
238
views
Parsing BAM file per cell from Smart-Seq2 dataset
starsolo
star
BAM
smartseq2
alignment
updated 2 days ago by
dsull
★ 7.3k • written 2 days ago by
brutonk
• 0
0
votes
0
replies
126
views
News:
Spring School in Bioinformatics - online, March 31 to April 4
Singularity
NGS
RNAseq
Phylogenomics
Docker
2 days ago by
Physalia-courses
★ 2.6k
1
vote
1
reply
207
views
Gene Expression Timeline Analysis for N=1
Analysis
Gene
Expression
updated 2 days ago by
ATpoint
87k • written 2 days ago by
ATRX
★ 1.2k
0
votes
1
reply
417
views
Interactive UMAP for scRNA-seq Data
HTML
RMarkdown
Interactive-UMAP
scRNA-seq
updated 2 days ago by
S
• 0 • written 4 weeks ago by
s
• 0
0
votes
0
replies
129
views
Converting PLINK GWAS Summary Statistics (--glm) to BED Format for UCSC Liftover
PLINK
LiftOver
PLINK2
BED
GWAS
16 hours ago by
Mllepnos
• 0
2
votes
0
replies
124
views
Tool:
PAN-GO Functionome: known functions of all human protein-coding genes
goenrichment
function
GO
goterms
geneontology
2 days ago by
geneontologyhelp
▴ 460
0
votes
0
replies
131
views
Can I combine segment results from Sequenza and cnvkit?
CNV
sequenza
cnvkit
2 days ago by
Ram
45k
2
votes
1
reply
246
views
How to clarify results from an HLA association analysis - Omnibus tests/HATK/other options
Omnibus
HLA
HATK
GWAS
Regression
updated 2 days ago by
grover.sandeep
▴ 20 • written 4 days ago by
s.may-wilson
▴ 50
0
votes
0
replies
134
views
News:
Multi-Omics Integration with Machine Learning — Online Course!
Machine-Learning
Multi-Omics
Depp-Learning
Data-Integration
BigData
2 days ago by
Physalia-courses
★ 2.6k
3
votes
2
replies
221
views
Alignment algorithm for DNA sequencing
sequencing
data
DNA
updated 2 days ago by
ATpoint
87k • written 2 days ago by
QX
▴ 70
0
votes
1
reply
199
views
RepeatMasker UCSC track
RepeatMasker
updated 3 days ago by
Michael
55k • written 3 days ago by
frarodmar17
• 0
0
votes
0
replies
149
views
rarefaction curve metagenomic reads show species saturation around 100 000 reads
metagenomics
rarefaction
kraken2
3 days ago by
rDNA
▴ 20
0
votes
4
replies
455
views
Help with CIBERSORTx Error in Single-Cell RNA-seq Analysis: Invalid 'times' Argument
cibersortx
updated 2 days ago by
jared.andrews07
★ 18k • written 5 days ago by
Pumla
• 0
9
votes
21
replies
7.8k
views
12 follow
BLAST Database error: Database memory map file error
makeblastdb
updated 3 days ago by
bagdevi.mishra
▴ 110 • written 6 months ago by
Martina
• 0
0
votes
2
replies
220
views
Looking up gene name from mRNA ID using biomaRt
R
mRNA
biomaRt
updated 2 days ago by
Ram
45k • written 3 days ago by
Khôi
• 0
0
votes
0
replies
167
views
Interpreting negative gap length in MUMMER4
mummer
translocation
3 days ago by
cedric.blais
▴ 20
0
votes
0
replies
153
views
Uncertainty about deepTools computeMatrix options for RNA modifications
deepTools
metagene
computeMatrix
3 days ago by
Kyle
• 0
0
votes
0
replies
148
views
News:
Live Online Course: Introduction to Python, April, 2025
python
programming
course
3 days ago by
soledad.esteban
• 0
6
votes
6
replies
563
views
Multiple factors in DESeq2
deseq2
3 days ago by
noodlejackson
▴ 40
10
votes
2
replies
314
views
Why do RNAseq reads align to non-gene regions of the bacterial genome?
RNAseq
transcription
updated 3 days ago by
i.sudbery
21k • written 4 days ago by
Texx
▴ 40
1
vote
1
reply
317
views
Confused about discovering novel genes in a model organism using STAR, Trinity, and reference genomes
star
trinity
rnaseq
updated 3 days ago by
Ram
45k • written 3 days ago by
zizigolu
★ 4.3k
3
votes
7
replies
368
views
nanopore variant calling
pacBio
long-read
nanopore
updated 2 days ago by
colindaven
7.3k • written 3 days ago by
Meghan.T
• 0
0
votes
3
replies
330
views
enrichGo problem
enrichGo
updated 2 days ago by
Arup Ghosh
3.3k • written 3 days ago by
mimijane1664
• 0
1
vote
4
replies
321
views
Seeking Help for Reanalysis of Raw WES Data
WES
updated 3 days ago by
Jeremy Leipzig
23k • written 4 days ago by
lidia.manczak
• 0
1
vote
8
replies
337
views
Biscuit Alignment and Index failed - WGBS - Bisulfite analysis
BWA
Biscuit
Bisulfite
updated 3 days ago by
Ram
45k • written 4 days ago by
Palanikumar.Palanichamy
• 0
0
votes
3
replies
280
views
illumina: Adapter Confusion
ILLUMINA
ADAPTER
updated 4 days ago by
GenoMax
150k • written 4 days ago by
lingjun meng
▴ 20
2
votes
3
replies
299
views
Identifying primer sequences from raw FASTQ files
primers
3 days ago by
Chandini
• 0
120,730 results • Page
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Answer: How to make amazing UMAP to spatialPlot GIF
Comment: Alignment algorithm for DNA sequencing
Comment: Alignment algorithm for DNA sequencing
Comment: Detecting Aneuploidy from Bulk RNA-Seq Data
ggalign: alternative to ComplexHeatmap, a ggplot2 extension for complex heatmap and marginal plots.
Comment: Efficient Gene Prediction on Large Eukaryotic Genomes
Answer: Reasoning - Why is it invalid to compare ratios of TPMs?
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Comment: CPTAC Data analysis
by
jain72744
▴ 10
Considering your suggestion, I'd like to elaborate what I wish to find. I started with proteomics analysis form TCGA data obtaining the pro…
Comment: How to make amazing UMAP to spatialPlot GIF
by
noodlejackson
▴ 40
Thank you @LChart, wow that sounds like a very elegant solution! I've got the seurat currently in R. I'll export to python and give it a ba…
Comment: How to deal with missing annotations in RNASeq data?
by
dthorbur
★ 2.9k
What do you mean by "low characterized plant species"? How many gene predictions does it have? There are a few options I see: 1. If …
Answer: phylogenic analysis
by
dthorbur
★ 2.9k
This question is hard to answer without much context, but there are some generalisations that might be useful. Ultimately, the answer i…
Comment: How to identify 16s sequences from binning data(contigs)?
by
Laura
• 0
Hi @layne_sadler — were you able to resolve this issue? Also, if you ended up creating your own database using a more recent SILVA release,…
Comment: Why protein sequence from AUGUSTUS can't find in blast
by
dariober
15k
> But when I blast the first forty protein sequences in blastp The 40 sequences are your query proteins, but you don't say what is your da…
Comment: Scanpy use with reticulate in R : var_group_positions argument set up
by
ZheFrench
▴ 590
After a bunch of coffee on monday morning, it worked fine. Hope this could help other folks that are lazy enough to open a pure python scri…
Comment: Methylation cpg probes annotation
by
yura.grabovska
▴ 730
Methylation array data (450K/EPIC etc) has existing annotation from Illumina including the position of each probe relative to its nearest g…
Comment: CPTAC Data analysis
by
ATpoint
87k
Hi, your previous questions have little to no responses and, importantly, all have little to no effort from your side. Please consider ask…
Comment: Efficient Gene Prediction on Large Eukaryotic Genomes
by
colindaven
7.3k
As others have said, 2 hours is nothing. Wait till you get to assembly or long read alignment. The quality of results is far more important…
Comment: Methylation cpg probes annotation
by
jain72744
▴ 10
So how to compare their differential expression to transcriptomics data
Comment: Annotations Tools
by
abebe1423
• 0
thank you, dear, I want to do, first merge the vcf file from 4 callers after that, I want to annotation it using annotation tools So I …
Answer: How Can I Get The Human Chromosome Centromere Position And Chromosome Length In
by
Helix
▴ 20
You can pre-process this file [http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/gap.txt.gz][1] and extract the centromeric regions f…
Comment: How to Process Multiple SRRs for the Same BioSample ?
by
GenoMax
150k
> I’m concerned about merging the FASTQ files due to potential batch effects. Would it be better to process everything separately? You cou…
Comment: Methylation cpg probes annotation
by
LChart
4.9k
Not all cpgs are within or proximal to genes.
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