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Recent Replies
Answer: Shell scripting looping help
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let's do it with nextflow.
invoke with
```
nextflow run biostar9523782.nf -resume --qdir "/path/to/QUERYDIR" --tdir "/path/to/TARGETDI…
Answer: How to find shortest lenth or longest length from fasta file
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[seqmagick](https://github.com/fhcrc/seqmagick) has a feature for summarizing sequence files that gives minimum and maximum length:
```
…
Answer: Shell scripting looping help
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What you are trying to do is not an optimal way. Or to put it bluntly, it is a massive waste of time. @michaeldondrup already told you an e…
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Something like [bam-readcount][1] tool could work, but you need a BAM as input with the alignment of the reads to your sequence of interest…
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I guess op means the three filed you get when you make a blast database from a fasta file:
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If you read that page, you find that UCSC points to the "analysisSet" because it doesn't contains haps/alts/fixes and that directory points…
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in folder2 I have blast database for each sequence. it means 3 files for each .
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You can tune this parameter too and Blast will also obey values >500 (just tested, there is no hard limit or anything). However, that requi…
Comment: Shell scripting looping help
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adyashapanda04
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Hi, NO I have not tried that . Can you please give me an example for the same .
Thank you
Comment: Shell scripting looping help
by
adyashapanda04
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10
yes, if I run the entire protein fasta with entire db it will give me top 500 hits . there is a limitation . I want all the hits not just t…
Comment: Shell scripting looping help
by
adyashapanda04
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10
if I run the entire protein fasta with entire db it will give me top 500 hits . there is a limitation . I want all the hits not just top 500
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