updated 8 minutes ago by
Pierre Lindenbaum
154k
•
written 15 minutes ago by
curious
▴
720
0
votes
1
reply
10
views
0
votes
0
replies
5
views
0
votes
0
replies
4
views
20 minutes ago by
rheab1230
▴
140
0
votes
1
reply
23
views
0
votes
1
reply
46
views
2
votes
4
replies
112
views
3
votes
3
replies
1.8k
views
0
votes
0
replies
33
views
updated 2 hours ago by
Ram
39k
•
written 3 hours ago by
hembrom.angelina
•
0
0
votes
4
replies
140
views
updated 30 minutes ago by
Ram
39k
•
written 8 hours ago by
gunala.nikhil
•
0
2
votes
6
replies
126
views
744
votes
162
replies
113k
views
101 follow
updated 5 weeks ago by
Biostar
1.8k
•
written 6.5 years ago by
Istvan Albert
98k
0
votes
0
replies
41
views
5 hours ago by
arshad1292
▴
90
0
votes
1
reply
60
views
1 hour ago by
demoraesdiogo2017
▴
90
0
votes
0
replies
40
views
5 hours ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
41
views
6 hours ago by
christoph.schubart
•
0
0
votes
0
replies
51
views
updated 2 hours ago by
Ram
39k
•
written 6 hours ago by
priyankamehta.1811
•
0
0
votes
0
replies
43
views
0
votes
1
reply
319
views
updated 6 hours ago by
Rory Stark
★
1.7k
•
written 9 months ago by
ipsc-jl
•
0
0
votes
3
replies
93
views
0
votes
1
reply
87
views
updated 2 hours ago by
Ram
39k
•
written 9 hours ago by
Wilford203
•
0
0
votes
1
reply
187
views
updated 2 hours ago by
Ram
39k
•
written 25 days ago by
David Langenberger
9.9k
0
votes
0
replies
40
views
7 hours ago by
Omics data mining
▴
220
0
votes
0
replies
42
views
1
vote
1
reply
142
views
0
votes
5
replies
170
views
0
votes
0
replies
41
views
0
votes
0
replies
33
views
0
votes
1
reply
93
views
0
votes
1
reply
83
views
updated 6 hours ago by
raphael.B
▴
360
•
written 10 hours ago by
sonsunjirachote
•
0
2
votes
2
replies
93
views
0
votes
3
replies
134
views
updated 4 hours ago by
Basti
★
1.5k
•
written 11 hours ago by
atemedorri137798
•
0
0
votes
1
reply
107
views
updated 11 hours ago by
ATpoint
72k
•
written 16 hours ago by
thaddeusknkl
•
0
4
votes
6
replies
1.4k
views
updated 16 hours ago by
minakshiboruahassam
•
0
•
written 9 months ago by
Plus
▴
20
0
votes
2
replies
239
views
updated 17 hours ago by
rfran010
▴
100
•
written 3 days ago by
kirillkirilenko
▴
10
1
vote
2
replies
133
views
updated 2 hours ago by
thadjudkins2
•
0
•
written 17 hours ago by
herh
•
0
2
votes
3
replies
354
views
2
votes
1
reply
168
views
11
votes
8
replies
427
views
7 follow
updated 18 hours ago by
rfran010
▴
100
•
written 1 day ago by
hashim.rana11
▴
20
10
votes
8
replies
8.2k
views
9 follow
0
votes
1
reply
91
views
2
votes
1
reply
123
views
updated 19 hours ago by
GenoMax
129k
•
written 22 hours ago by
sodiumnitrate
▴
20
1
vote
0
replies
90
views
3
votes
4
replies
215
views
0
votes
1
reply
99
views
updated 2 hours ago by
Ram
39k
•
written 1 day ago by
caique.manochio
•
0
11
votes
4
replies
268
views
updated 1 day ago by
Pierre Lindenbaum
154k
•
written 1 day ago by
Mohd
▴
20
0
votes
4
replies
212
views
21 hours ago by
smanzano250800
•
0
4
votes
2
replies
169
views
updated 1 day ago by
Ram
39k
•
written 1 day ago by
aziznasr1920
▴
10
0
votes
0
replies
193
views
7
votes
14
replies
466
views
1
vote
7
replies
266
views
updated 2 hours ago by
Ram
39k
•
written 1 day ago by
mohsamir2016
▴
30
Recent Votes
Recent Locations •
All
France, just now
Canada, 1 minute ago
United States, 2 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 2 minutes ago
United States, 5 minutes ago
United States, 5 minutes ago
United States, 5 minutes ago
Recent Awards •
All
Popular Question to
A_heath
▴
140
Popular Question to
isha.lily20
▴
10
Popular Question to
demoraesdiogo2017
▴
90
Popular Question to
arshad1292
▴
90
Scholar to
Rory Stark
★
1.7k
Popular Question to
tshtatland
▴
100
Recent Replies
Comment: What does canonical transcript mean in the context of VEP
by
Pierre Lindenbaum
154k
https://www.ensembl.org/info/genome/genebuild/canonical.html
> The Ensembl Canonical transcript is a single, representative transcript ide…
Answer: Why is coordinate sort required before findng read depths?
by
Ram
39k
In an unsorted BAM file, reads can be in any random order. In a co-ordinate sorted BAM file, reads are in the order in which they map to th…
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
by
Alexander
▴
70
how does it correspond to 27.2 ? or these are the other proteins ?
Comment: Merge different vcf files
by
Ram
39k
Normalize them first using `vt normalize` or `bcftools norm` - they need to be in left-aligned parsimonious representation before you can d…
Answer: integrate single cell RNA sequencing data
by
John Ma
▴
300
You need to perform batch effect removal for these. Seurat has its integration protocol, and if you use scverse on Python, the usual choice…
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
by
GenoMax
129k
I added the link for NCBI "book" since DIAMOND seems to follow the format/reporting structure for blast+ results. While the numbers shown i…
Comment: bcftools "--filter-logic" flag, what + means?
by
Ram
39k
`PASS` + `filter_name` is `filter_name`, not `PASS,filter_name`. PASS means the locus hit no filter. You'll never see a `PASS,<something>`.…
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
by
Alexander
▴
70
Thank you for the reply ! I got seems to be even more puzzled here - we see "identities" 95% while in the example "pident" is 27.2 - so …
Comment: bcftools "--filter-logic" flag, what + means?
by
Eugene A
▴
170
Thanks a lot for the explanation!
Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy
by
Ram
39k
> Do you mean that because it is 1/1, so both copies is different from the reference and that is why the 0 in the AD is because no reads is…
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
by
Alexander
▴
70
Thank you !
@buchfink would you be so kind to comment ?
Comment: The famous WGS dataset, Ashkenazi Trio?
by
thadjudkins2
•
0
As the previous poster said we’re not sure what you’re looking for, but the basic data are available at the NCBI ftp site (linked from the …
Comment: Retrieving allele-specific information for a variant using VEP annotation
by
bt_cepo
▴
20
Thank you both for your answers @masklin @ram !
For anyone facing the same problem, I followed Ram's suggestions and it worked beautifully…
Comment: how to Construct a Newick tree file from five large fasta files
by
gunala.nikhil
•
0
I need a phylogenetic tree for those 5 genomes
Comment: featurecounts not working on mirbase annotation file
by
GenoMax
129k
What does your `featureCounts` command line looks like?
Traffic: 2648 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6