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How to remove duplicate sites and inconsistent sites from a VCF?
vcf michigan impute server plink written 1 hour ago by Sharon • 340 • updated 35 minutes ago by finswimmer ♦ 6.8k
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Is there some tools can convert a table file or a csv file in to a vcf file?
snp written 44 minutes ago by Zeason • 0
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5 follow
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Most effective way to merge individual VCF files into VCF files merged by chromosome
vcf vcfmerge merge vcftools plinkseq written 4.5 years ago by vlaufer • 250 • updated 1 hour ago by Biostar ♦♦ 20
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1
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In GSEA, how can one "correlate" gene expression with categorical phenotype data?
pearson genes correlation gsea expression written 9 hours ago by O.rka • 60 • updated 1 hour ago by Kevin Blighe ♦ 32k
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Determination of hub genesin PPI network
ppi hub genes written 1 hour ago by catechize.2.learn • 40
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5 follow
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Error in prepDE.py in Tuxedo protocol after StringTie quantification
stringtie deseq2 new tuxedo protocol rna-seq written 6 hours ago by swarajgaikwad15 • 0 • updated 1 hour ago by WouterDeCoster ♦ 34k
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Accessing DEG files with extension dat, phr pin,psq
deg files sequence deg written 1 hour ago by tzainab.phd16seecs • 0 • updated 1 hour ago by WouterDeCoster ♦ 34k
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44
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Graphical output of Blast. What are grey and black lines?
gaphical output blast written 3 hours ago by english.server • 80 • updated 1 hour ago by sangram_keshari • 110
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May I use numreads for doing DGE after quantifying by Salmon
salmon dge written 3 hours ago by lkianmehr • 30 • updated 1 hour ago by WouterDeCoster ♦ 34k
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Job: Postdoc position in Bioinformatic and transcriptomic analysis and detection of non-coding RNA in bacteria
bioinformatics job written 9 days ago by coordinator • 0
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News: DataTech19 submission deadline and keynotes: Jared Lander, Mine Cetinkaya-Rundel, Debbie Bard
R python news conference news hpc data science written 2 hours ago by caterina.constantinescu • 10
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Can't load Bioconductor package genomewidesnp6cdf in R
affymatrix R bioconductor written 15 hours ago by andbeonetraveler • 0 • updated 2 hours ago by Santosh Anand • 4.0k
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News: SBCADD 2019 : 11th National Symposium Cum Workshop on Recent Trends in Structural Bioinformatics and Computer Aided Drug Design
conference news written 3 hours ago by umesh • 0
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1
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1
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Merging single-cell RNA-seq from different platforms across different conditions
single-cell merging scrnaseq platforms written 5 hours ago by mBrio • 10 • updated 3 hours ago by Minstein • 40
383
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19
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30k
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177 follow
19
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 23 months ago by Istvan Albert ♦♦ 78k • updated 3 hours ago by RamRS ♦ 19k
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51
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Dataset kind of data NCBI
dataset disease written 3 hours ago by lvitale • 0 • updated 3 hours ago by bharata1803 • 360
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2
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90
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6 follow
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Get Rs Number Based On Chromosome and Position
vcf rna-seq snp written 21 hours ago by aiteteji • 10 • updated 4 hours ago by Emily_Ensembl ♦ 16k
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34
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Overlapped Variations Detecting
snp written 4 hours ago by Mbillah • 100 • updated 4 hours ago by Emily_Ensembl ♦ 16k
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Position error using write.plink
R snp plink snpstats write.plink written 5 hours ago by ida.larsson • 20 • updated 4 hours ago by zx8754 ♦ 5.6k
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General Question to shRNA-Seq analysis
shrna experimental-design written 5 hours ago by scheitelt • 0
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1
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93
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1
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differently expressed genes
gene rna-seq written 19 hours ago by maryam.akram001 • 10 • updated 5 hours ago by kristoffer.vittingseerup • 780
47
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6
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16k
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24 follow
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Get rs number based on position
mysql snp ucsc written 7.4 years ago by Zach Stednick • 650 • updated 5 hours ago by zx8754 ♦ 5.6k
3
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1
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63
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1
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Seurat Cell Cycle Phase Assignments
rna-seq cell cycle single cell seurat written 17 hours ago by ianmw • 20 • updated 5 hours ago by kristoffer.vittingseerup • 780
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Calibrate curve for binary logistic model but all the parameters list in the warnings
R written 21 hours ago by d2399268932 • 0 • updated 6 hours ago by zx8754 ♦ 5.6k
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47
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Missing hhm_db and a3m_db for HHSuite
hhpred hhsuite hhsearch written 6 hours ago by briantn97 • 0
2
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719
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Diamond annotation versus Kallisto/Sleuth
R rna-seq blast sequencing written 19 months ago by BioBing • 100 • updated 6 hours ago by zx8754 ♦ 5.6k
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a question about fishplot
fishplot R written 7 hours ago by meizi2015 • 10 • updated 6 hours ago by zx8754 ♦ 5.6k
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bwa mem -R or samtools -T
bwa written 6 hours ago by flystar233 • 0
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msi sensor for microsatellite instability detection
next-gen written 6 hours ago by manasa22.reddy • 40
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Advice for indel calling
indel rna-seq written 7 weeks ago by jparker4 • 20 • updated 7 hours ago by Biostar ♦♦ 20
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