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Recent Replies
Answer: Heatmap of rnaseq data with z-score scale
by
swbarnes2
14k
There isn't really a problem. Your data is what it is, but I think adding data from a totally different data set is a bad idea. RNASeq is…
Comment: Combining scRNA-seq datasets that have been processed differently
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S
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Thank you for your input! And yes I agree with you in terms of the difference in processing, though the workflow was pretty standard except…
Answer: Heatmap of rnaseq data with z-score scale
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Basti
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The z-score is the raw score minus the mean of all samples, divided by the standard deviation so if you add samples, then you change the z-…
Comment: Heatmap of rnaseq data with z-score scale
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giovanna
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![Figure1][1]
![Figure2][2]
[1]: /media/images/ccd91222-df0a-4c33-984f-61fb94dc
[2]: /media/images/50856040-0bf9-4389-85da-7ae…
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Morris_Chair
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Thanks to everyone, I appreciate the support :)
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Confirmed that the `STAR` executable provided by `conda` (as of today) is not able to align the data on a M3 Mac though it seems to produce…
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OK, thanks.
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goh, if there are not too many of those it could be fine indeed.
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Aha, I suspected something like this already :) :
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With conda I have no problem installing STAR but I have the problem of the empty BAM files.
Then I have decided to compile it from source…
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In case this suggestion does not work try the solution posted here: https://github.com/alexdobin/STAR/issues/1265#issuecomment-1595135934
Comment: STAR aligner problem on local laptop
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GenoMax
151k
> With conda there is no problem
Then why are you trying to compile locally. Are you expecting to get more (performance) out of a locally …
Comment: STAR aligner problem on local laptop
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dsull
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OK, you need to compile add `CXXFLAGS_SIMD="-march=native"` at the end of your make command.
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