8 minutes ago by
krassowski.michal
▴
120
0
votes
1
reply
11
views
0
votes
3
replies
1.4k
views
updated 10 minutes ago by
liuhaizhou
•
0
•
written 5.8 years ago by
anz
•
0
0
votes
0
replies
5
views
0
votes
1
reply
14
views
updated 22 minutes ago by
GenoMax
107k
•
written 32 minutes ago by
ponmalar1120
•
0
0
votes
0
replies
19
views
1
vote
1
reply
26
views
0
votes
0
replies
25
views
1 hour ago by
Refine
•
0
627
votes
157
replies
72k
views
93 follow
1
vote
1
reply
354
views
0
votes
0
replies
27
views
2 hours ago by
lluc.cabus
▴
10
0
votes
0
replies
33
views
0
votes
0
replies
24
views
1
vote
3
replies
151
views
updated 3 hours ago by
colindaven
★
3.3k
•
written 9 days ago by
chimerajit
•
0
0
votes
3
replies
104
views
0
votes
0
replies
24
views
0
votes
3
replies
143
views
updated 5 hours ago by
Rogerio Ribeiro
▴
70
•
written 8 hours ago by
tomas4482
▴
40
0
votes
2
replies
87
views
34 minutes ago by
erik.burchard
•
0
1
vote
7
replies
364
views
6 follow
0
votes
1
reply
68
views
updated 52 minutes ago by
lieven.sterck
12k
•
written 8 hours ago by
Ric
▴
360
2
votes
2
replies
139
views
updated 9 hours ago by
Chris Dean
▴
200
•
written 10 hours ago by
Simon Ahn
•
0
1
vote
1
reply
118
views
updated 12 hours ago by
lethalfang
▴
10
•
written 14 hours ago by
drabiza1
•
0
0
votes
0
replies
67
views
13 hours ago by
eozcan
•
0
1
vote
2
replies
327
views
updated 3 hours ago by
Kevin Blighe
77k
•
written 11 months ago by
wes
▴
60
0
votes
4
replies
266
views
1
vote
1
reply
103
views
updated 14 hours ago by
Pierre Lindenbaum
139k
•
written 14 hours ago by
curious
▴
600
0
votes
0
replies
38
views
14 hours ago by
Shicheng Guo
★
8.8k
0
votes
0
replies
49
views
0
votes
2
replies
108
views
16 hours ago by
aritra90
▴
60
0
votes
6
replies
745
views
2
votes
1
reply
87
views
updated 18 hours ago by
jared.andrews07
★
11k
•
written 20 hours ago by
Pratik Mehta
▴
590
3
votes
6
replies
168
views
4
votes
8
replies
633
views
3
votes
1
reply
68
views
updated 19 hours ago by
Mensur Dlakic
★
14k
•
written 20 hours ago by
kmkdesilva
▴
90
0
votes
0
replies
38
views
0
votes
1
reply
132
views
updated 20 hours ago by
gconcepcion
▴
130
•
written 1 day ago by
eli_bayat
▴
50
0
votes
0
replies
57
views
0
votes
0
replies
45
views
0
votes
0
replies
34
views
0
votes
3
replies
126
views
20 hours ago by
n.y.bell
•
0
1
vote
1
reply
83
views
updated 21 hours ago by
Mensur Dlakic
★
14k
•
written 23 hours ago by
Shaurya
•
0
2
votes
2
replies
601
views
0
votes
2
replies
68
views
0
votes
1
reply
76
views
updated 20 hours ago by
Mensur Dlakic
★
14k
•
written 22 hours ago by
desptsp
•
0
1
vote
1
reply
65
views
updated 20 hours ago by
manaswwm
▴
170
•
written 22 hours ago by
lessismore
★
1.1k
1
vote
2
replies
84
views
21 hours ago by
margott.j
▴
10
3
votes
3
replies
94
views
updated 22 hours ago by
Friederike
7.6k
•
written 23 hours ago by
Russ
▴
480
0
votes
5
replies
172
views
0
votes
1
reply
148
views
1
vote
2
replies
86
views
0
votes
0
replies
33
views
Recent Votes
Recent Locations •
All
United States, just now
Japan, just now
Taiwan, 1 minute ago
China, 1 minute ago
Netherlands/Leiden, 1 minute ago
University of Connecticut, 2 minutes ago
Bologna, 2 minutes ago
Recent Awards •
All
Popular Question to
Joe
19k
Popular Question to
mschmidt
▴
50
Scholar to
Pierre Lindenbaum
139k
Popular Question to
Carlo Yague
7.0k
Popular Question to
liorglic
▴
440
Popular Question to
slimane.khayi
▴
60
Popular Question to
i.am.filippov
•
0
Recent Replies
Comment: New datasets for ancestry estimation and imputation?
by
krassowski.michal
▴
120
Or, for ancestry estimation is there an open subset of any of the large studies taking a subset of SNPs that are most predictive of populat…
Answer: Need old kegg database v67.1
by
liuhaizhou
•
0
Hi, do you have solutions? I also have this question. I need KGML files of old KEGG versions.
Comment: single end Trimmomatic
by
GenoMax
107k
You should use
trimmomatic SE -threads 4 SRR12304924_1.fastq SRR12304924.trimmed.fastq HEADCROP:19
If you need to trim adapters then …
Comment: Opposite Signed Genes in WGCNA Signed Consensus Analysis
by
erik.burchard
•
0
OK, I'm working on it now and I will get back to you as soon as I know.
Thanks!
Comment: Jbrowse reference sequence issue
by
GenoMax
107k
tagging: https://www.biostars.org/u/6166/ developer of Jbrowse.
Comment: overlaps between subfeatures in the underlying annotation
by
lieven.sterck
12k
you can try to run [agat][1] , this can process a GFF file and do lots of things with it, such as merging overlapping features in the annot…
Answer: Using Aspera to download from GSA (BIG)
by
liorglic
▴
440
Just updating that I got a helpful answer from the GSA team.
Apparently, to download a whole data set you can run:
./ascp -i [/pa…
Comment: chromoMap Error: .rowNamesDF<-`(x, value = value) : invalid 'row.names' length
by
gubrins
▴
110
Heys! Did you solve it? I also had a lot of issues because of formatting. Could be that the annot_file_1 is not separated by tabs? Just in …
Comment: Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
by
hkarakurt
▴
110
Actually high accuracy mode is taking too long. But I also tested the pipeline on basecalled FASTQ reads that I downloaded from same web pa…
Answer: How to do Functional Annotation for Wheat
by
colindaven
★
3.3k
You can get the FASTA sequences (amino acids) from these and run interproscan https://github.com/ebi-pf-team/interproscan on them. It's qui…
Comment: Recommended mapper
by
colindaven
★
3.3k
Results on mock communities, less false positives. I'm not a great believer in the accuracy statistics of tool authors, they are invariably…
Answer: Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
by
colindaven
★
3.3k
Check the depth of coverage you have, eg with samtools depth, sambamba depth, etc. I don't think you have enough data aligned to chr20.
Us…
Comment: Methylation coordinates for hg19
by
lily
▴
70
If you are looking for more recently published data you should also consider methylation data in hg38 annotation, there seem to be newer on…
Comment: Create custom annotation for Chinese hamster (Cricetulus griseus)
by
Papyrus
★
1.5k
Well, I have never used that package in particular. It is possible that you will have to transform the input annotation to the format speci…
Answer: How to do Functional Annotation for Wheat
by
chimerajit
•
0
The only way to do GO analysis of wheat( when you used V2.Ref&Annotation set) is to find out the GO number for genes provided by Iwgsc anno…
Traffic: 2772 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6