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writing function for logistic regression
statistic written 26 minutes ago by saadleeshehreen • 40
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SNPs genomic classification based on VCF annotation
snp written 53 minutes ago by aarvaBioinfo • 10
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Blastp not returning results?
biopython blast protein sequencing written 1 hour ago by cindyfang70 • 0
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Insert size smaller than the read lenght
rna-seq sequencing written 1 hour ago by mariaroviscomonteiro • 0
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Choosing a ChIP-seq control for Encode pipeline?
encode chip-seq written 2 hours ago by gewa • 0 • updated 1 hour ago by Alex Reynolds ♦ 25k
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(Closed) samtools error #E27
samtools written 2 hours ago by michael • 0
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162
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How to filter/edit some BED lines.
bedtools linux written 7 weeks ago by star • 60 • updated 2 hours ago by Biostar ♦♦ 20
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samtools error #E27
samtools written 3 hours ago by michael • 0 • updated 3 hours ago by Ram ♦ 17k
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PCA plot for TOP 500 genes + prcomp
rna-seq written 5 hours ago by morteza.khabiri • 0
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1
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1
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Grail: reflow on AWS vs others (snakemake/cfncluster, etc)
aws workflow snakemake reflow cfncluster written 5 hours ago by isaacyho • 0 • updated 4 hours ago by btsui • 230
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172 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 20 months ago by Istvan Albert ♦♦ 77k • updated 4 hours ago by Fanta • 0
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bcftools roh: short way to put several samples from a merged VCF in the same column?
bcftools roh bcftools merge first thanks to written 8 hours ago by miqrom • 0
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5
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177
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6 follow
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How to get PCA3 and PCA4 from Deseq2?
rna-seq written 3 days ago by morteza.khabiri • 0
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5 follow
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How to convert fasta file format to phylip file format
fasta R phylogenetic tree phylip ggtree written 13 hours ago by Mike • 1.0k • updated 6 hours ago by zx8754 ♦ 4.8k
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maftools - no chromosomal coordinates
R bioconductor snp written 9 hours ago by sumithrasank75 • 90 • updated 6 hours ago by zx8754 ♦ 4.8k
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112
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1
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Salmon Algorithm Binary Search
salmon written 16 hours ago by vincentpailler • 30 • updated 7 hours ago by Rob ♦ 2.5k
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Understanding HiChIP data and interactions
hichip written 7 hours ago by User 7754 • 140
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59
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how to detect mutation from viral RNA-seq data
R rna-seq snp sequencing written 8 hours ago by babasaraki • 0 • updated 8 hours ago by grant.hovhannisyan • 1.0k
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127
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Could someone explain this perl command?
perl bash written 9 hours ago by Seq225 • 50
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134
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Probabilistic PCA on very sparse SNP matrix
probabilistic pca pca snpstats snpmatrix written 9 weeks ago by dominicdhall • 40 • updated 8 hours ago by Biostar ♦♦ 20
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RNASeq alignment and quantification for a transgenic mouse
transgenic mouse alignment rna-seq custom genome written 8 hours ago by viktorfeketa • 0 • updated 8 hours ago by swbarnes2 ♦ 3.9k
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6 follow
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Tool: Introducing Skymap: Allelic read counts extracted from 250,000 human sequencing runs in Sequence Read Archive
chip-seq snp rna-seq tool written 7 days ago by btsui • 230
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Forum: Current MCB major thinking of going into Bioinformatics
bioinformatics forum written 11 hours ago by SeYu • 0
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Extract SNPs from VCFfile located in genes based on GFF file information
gene snp written 12 hours ago by Denis • 30 • updated 11 hours ago by finswimmer ♦ 4.5k
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1
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61
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1
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Merge vcf files of structural variants
vcf merge structural_variants written 13 hours ago by ma17 • 0 • updated 11 hours ago by WouterDeCoster ♦ 31k
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1
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162
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5 follow
1
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Heat map of DE genes identified in Graph based clustering of ScRNA-Seq
rna-seq heatmap written 7 days ago by rob.costa1234 • 150 • updated 11 hours ago by Kristin Muench • 290
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Kissplice: Problem getting SNPs in test data
snp kissplice written 4 months ago by WeepingMeadow • 0 • updated 12 hours ago by leandro.ishi.lima • 80
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Is there consensus on what constitutes a good BUSCO score?
genome busco assembly scoring quality scoring written 13 hours ago by chrispyatt25 • 0 • updated 12 hours ago by lieven.sterck • 2.1k
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6 follow
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Boxplot each row in a dataset in R?
boxplot dataset plot R cancer written 15 hours ago by bio94 • 40 • updated 13 hours ago by cpad0112 • 8.3k
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Subset analyze of multiple sample file in PLINK 1.9
sequence plink snp written 18 hours ago by mike229lin • 10 • updated 14 hours ago by zx8754 ♦ 4.8k
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