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Recent Replies
Comment: How to download this genome?
by
GenoMax
104k
Fasta sequence for the organism can be found in the genome database here: https://www.ncbi.nlm.nih.gov/genome/232
Comment: Collect ITS sequences from bacterial genomes
by
h.mon
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ITS is the region between adjacent 16S and 23S rRNA genes. As you have the 16S and 23S annotations, you can get the ITS intervals with some…
Comment: Genome analysis and improvement
by
Duminda
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Thank you.. the nanopore coverage was around 6.4X .. I will try it first as you suggested...
Comment: CellPhoneDB results
by
torabian.p
•
0
Thank you @Istvan
This package talks about ligand-receptor interactions and the dot plot is the results I got. It seems the warmer colors …
Answer: How to download this genome?
by
star715
▴
20
That seems like just the metadata for the sequencing project with out genome sequences.
If you see in the left hand side of the website…
Answer: How to download this genome?
by
swbarnes2
10k
I'm not familiar with how genomes are stored their either.
But I didn't run to the internet, I poked around.
Is this what you want?
http…
Comment: Strand specific quantification with strand-splitted BAM files
by
Istvan Albert
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this is a common situation where one tries to understand exactly how certain RNA-Seq counts are computed, and it turns out that it is often…
Comment: How to modify dot plot in MUMmer 3 for bacteria comparative genomics?
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Mensur Dlakic
★
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You can open the `.gp` file in any text editor and modify it. If you learn what Gnuplot commands mean by consulting documentation, you may …
Comment: aGPCR
by
Mensur Dlakic
★
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You can do this as well as I can. Look for all the residues that are not shaded in light blue (those are TM helices) and are labeled ECL2. …
Comment: Strand specific quantification with strand-splitted BAM files
by
compuTE
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Hi! Thank you for the answer, it's good to hear this is normal :-).
I think I understand what you are saying, but I believe my question s…
Comment: Differentially gene expression multispecies
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Carlo Yague
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I'm not sure to understand what you are trying to do. To make a differential gene expression analysis, one needs to compare the expression …
Comment: Going from Seurat object to DESeq2 analysis
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Cells from the same sample are not independent replicates because they model the variance from within a sample and not a population. This m…
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Thanks ! I modified some stuff in your files, firstly, I removed the " in the Convert_UMI_Label.tsv, secondly the 'X' in front of the barc…
Comment: Differentially gene expression multispecies
by
tiagobellintani
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Hi, buddy, sorry for the delay. On sequencing they were sequenced in the same batch and the conditions were the same. My doubt is that beca…
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