User: ashaneev07

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ashaneev0720
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Posts by ashaneev07

<prev • 79 results • page 1 of 8 • next >
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Maker: SNAP training error
... Hello all I've been training snap for maker [PDF - link](http://www.yandell-lab.org/publications/pdf/maker_current_protocols.pdf). The first run was completed but, during the second stage of training with the *snp.hmm* file I've got the following errors. Could you please have a look into this p ...
genome annotation maker written 5 days ago by ashaneev0720 • updated 5 days ago by zx87548.7k
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Comment: C: Genome de novo annotation with Maker
... Hii.. I've been looking for ProtExcluder but, i couldn't find it out. could u please share the link to download the same? ...
written 17 days ago by ashaneev0720
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Comment: C: RepeatModeler and RepeatMasker for non-model species
... Did u solve ur problem.? because i'm also getting something similar to ur result. ...
written 18 days ago by ashaneev0720
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Comment: C: Augustus and SNAP training in Maker-p pipeline
... Yes.offcource. The following tutorial was used for the installation of maker. http://gmod.org/wiki/MAKER_Tutorial_2013 But that doesn't include repeatrunner. So i downloaded it from http://www.yandell-lab.org/software/repeatrunner.html. however I couldn't install it because of the supporting softw ...
written 29 days ago by ashaneev0720
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Comment: C: Augustus and SNAP training in Maker-p pipeline
... Hii.. I have few more doubts regarding the annotation with maker. I found that some articles describes Maker annotation has two repeat masking steps- through repeat masker and repeat runner. I've installed repeat masker program as mentioned in (http://gmod.org/wiki/MAKER_Tutorial_2013). When i'm try ...
written 4 weeks ago by ashaneev0720
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Maker-P supporting software: repeatrunner installation
... Is CGL mandatory for the installation of Repeatrunner? Is anyone there running repeatrunner software with maker-p? Can I have some advices please ? I don't have much experience in annotation using Maker, so any help would be appreciated. Thank you very much in advance! ...
genome annotation sequencing maker written 4 weeks ago by ashaneev0720
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Comment: C: Failed during make test
... I've downloaded from https://github.com/Yandell-Lab/CGL and this gave me the above error.When i was downloaded it from https://www.yandell-lab.org/software/cgl.html shows the following error message. # Failed test 'check base at postition 9118 in query.' # at lib/Bio/Search/HS ...
written 5 weeks ago by ashaneev0720
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Comment: C: Failed during make test
... Please have a look into this... t/embedded-Bio-Search-HSP-PhatHSP-blastx.t ....... 2/? # Failed test 'check base at postition 9118 in query.' # at lib/Bio/Search/HSP/PhatHSP/blastx.pm line 223. # got: 'H' # expected: 'M' # Failed test 'check ba ...
written 5 weeks ago by ashaneev0720
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Comment: C: Failed during make test
... i didn't install Chaos-xml and data store. But, they are optional.Otherwise I've complete prerequisites installation. ...
written 5 weeks ago by ashaneev0720
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Failed during make test
... Hiii...i'm getting the following error message during the installation of CGL, its essential for repeatrunner. Could u please have look into this problem and help me out of this..Thank you. Test Summary Report ------------------- t/embedded-Bio-Search-Hit-PhatHit-Base. ...
reapeatmasking repeatrunner cgl written 5 weeks ago by ashaneev0720 • updated 2 days ago by Biostar ♦♦ 20

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Popular Question 5 weeks ago, created a question with more than 1,000 views. For Error while running gatk

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