Moderator: Kevin Blighe

gravatar for Kevin Blighe
Kevin Blighe30k
Reputation:
30,050
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Website:
https://github.com/kev...
Twitter:
KevinBlighe
Last seen:
6 hours ago
Joined:
1 year, 1 month ago
Email:
k**********@outlook.com

Visiting Professor and Consultant Bioinformatician.

Incrocio le dita e spero.
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Developer / Maintainer of Bioconductor packages:

Posts by Kevin Blighe

<prev • 4,493 results • page 1 of 450 • next >
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Comment: C: Using vcftools to filter SNPs by a linkage disequilibrium (r2) threshold
... Kia ora bro / dudette! ...
written 6 hours ago by Kevin Blighe30k
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Comment: C: how to de-aggregate a table in R
... Hey lessismore, if other answers helped, then you can upvote / accept those, too. Please take a look at Chirag's ...
written 6 hours ago by Kevin Blighe30k
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Comment: C: how to de-aggregate a table in R
... Great work as usual, cpad. Enjoy your weekend. ...
written 6 hours ago by Kevin Blighe30k
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Comment: C: RNA-Seq normalization using limma or DESeq2
... When you use DESeq2, the differential expression analysis will be performed on the normalised, un-transformed counts. One then uses the variance-stabilising or regularised log transformation for downstream analyses, like PCA, MDS, hierarchical clustering / heatmap generation, *et cetera*. ...
written 1 day ago by Kevin Blighe30k
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Comment: C: Where can I download a pharmacogenetic data set?
... No - it does not really make it more understood at all. Can you please try a little harder? ...
written 1 day ago by Kevin Blighe30k
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Comment: C: RNASeq - low correlation between samples
... Thank you. Have you not done anything else in terms of QC? Are you literally paused here because you feel that there is an issue with the quality of the samples? You should at least proceed with your further analyses and then decide later if there may have been some problem. ...
written 1 day ago by Kevin Blighe30k
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Comment: C: How to extract the list of genes from TCGA CNV data
... Ah, look at you, your own Moderator! :) Try: `source("https://bioconductor.org/biocLite.R")` (without ***www***) If that still does not work, then try: `source("http://bioconductor.org/biocLite.R")` (without ***http***) If that does not work, then you can post on Stack Exchange ...
written 1 day ago by Kevin Blighe30k
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Comment: C: How to predict CNV based on Gene Expression dataset
... There are many microarrays that specifically target copy number. Also, there is a long-running project, called AROMA, that has developed methods to derive copy number from SNP arrays. In this case, the user is indeed referring to a cDNA microarray that aims to measure gene expression. ...
written 1 day ago by Kevin Blighe30k
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Comment: C: Using vcftools to filter SNPs by a linkage disequilibrium (r2) threshold
... VCFtools has long been superseded by BCFtools. Please use that. If you have other questions, you may open your own question. ...
written 1 day ago by Kevin Blighe30k
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Comment: C: How to extract the list of genes from TCGA CNV data
... Perhaps open a new question, and show that it has a definitive relationship to bioinformatics. ...
written 1 day ago by Kevin Blighe30k

Latest awards to Kevin Blighe

Scholar 1 day ago, created an answer that has been accepted. For A: How to change conditions in DESeq2
Appreciated 1 day ago, created a post with more than 5 votes. For A: How to change conditions in DESeq2
Teacher 2 days ago, created an answer with at least 3 up-votes. For A: How to change conditions in DESeq2
Good Answer 3 days ago, created an answer that was upvoted at least 5 times. For A: cox proportional hazard model
Scholar 3 days ago, created an answer that has been accepted. For A: How to change conditions in DESeq2
Scholar 5 days ago, created an answer that has been accepted. For A: How to change conditions in DESeq2
Appreciated 6 days ago, created a post with more than 5 votes. For A: How to change conditions in DESeq2
Scholar 6 days ago, created an answer that has been accepted. For A: How to change conditions in DESeq2
Appreciated 6 days ago, created a post with more than 5 votes. For A: How to change conditions in DESeq2
Appreciated 8 days ago, created a post with more than 5 votes. For R functions edited for parallel processing
Good Answer 8 days ago, created an answer that was upvoted at least 5 times. For A: cox proportional hazard model
Scholar 9 days ago, created an answer that has been accepted. For A: extract dendrogram cluster from pheatmap
Teacher 9 days ago, created an answer with at least 3 up-votes. For A: cox proportional hazard model
Teacher 10 days ago, created an answer with at least 3 up-votes. For A: cox proportional hazard model
Scholar 10 days ago, created an answer that has been accepted. For A: extract dendrogram cluster from pheatmap
Appreciated 11 days ago, created a post with more than 5 votes. For R functions edited for parallel processing
Scholar 11 days ago, created an answer that has been accepted. For A: extract dendrogram cluster from pheatmap
Scholar 11 days ago, created an answer that has been accepted. For A: extract dendrogram cluster from pheatmap
Teacher 11 days ago, created an answer with at least 3 up-votes. For A: cox proportional hazard model
Teacher 16 days ago, created an answer with at least 3 up-votes. For A: cox proportional hazard model
Scholar 16 days ago, created an answer that has been accepted. For A: extract dendrogram cluster from pheatmap
Teacher 16 days ago, created an answer with at least 3 up-votes. For A: cox proportional hazard model
Good Answer 16 days ago, created an answer that was upvoted at least 5 times. For A: cox proportional hazard model
Good Answer 17 days ago, created an answer that was upvoted at least 5 times. For A: cox proportional hazard model
Good Answer 19 days ago, created an answer that was upvoted at least 5 times. For A: cox proportional hazard model

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