Moderator: Kevin Blighe

gravatar for Kevin Blighe
Kevin Blighe21k
Reputation:
21,140
Status:
Trusted
Location:
University College London Cancer Institute
Website:
https://github.com/kev...
Last seen:
an hour ago
Joined:
9 months, 3 weeks ago
Email:
k**********@outlook.com

Irish bioinformatician and Senior Research Associate in Bioinformatics at University College London Cancer Institute.

Previously worked in USA, Italy, Malta, Brazil, UK, and Ireland.

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There are mountains in our way... but we climb a step every day...

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Nella fantasia, io vedo un mondo giusto; Lì, tutti vivono in pace e in onestà...
Io sogno d'anime che sono sempre libere

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Give me one moment in time, when I'm more than I thought I could be...

Posts by Kevin Blighe

<prev • 3,286 results • page 1 of 329 • next >
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Comment: C: GDC server down???
... What exact commands have you both tried? It's possible that the data has just shifted to a new location. The TCGA data is constantly being refined. Also, which R and package versions? ...
written 2 hours ago by Kevin Blighe21k
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Comment: C: String editing for output file name
... The user did indeed indicate that it worked: https://www.biostars.org/p/320699/#320940 Can you clarify, ttom? ...
written 4 hours ago by Kevin Blighe21k
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Comment: C: RNA BULK SEG ANALYSIS
... Good work dude! ...
written 4 hours ago by Kevin Blighe21k
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Comment: C: How to link "miRNA gene quantification" and "clinical- Patient" data retrieved f
... Yes, is everything now okay, in that case? ...
written 5 hours ago by Kevin Blighe21k
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Answer: A: How to link "miRNA gene quantification" and "clinical- Patient" data retrieved f
... > 1. How to link Patient ID from "miRNA gene quantification" data where it is TCGA-G9-6356-01A-11R-1788-13 with "clinical" file which contains > "TCGA-G9-6356" as Patient ID ? In the general basic clinical metadata, there is only 1 entry per individual. Each individual is identified by the ...
written 22 hours ago by Kevin Blighe21k
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Comment: C: SNP + INDEL Merging Guidelines
... Yes, I believe GATK's CombineVariants is the answer. ...
written 22 hours ago by Kevin Blighe21k
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Comment: C: fviz_nbclust (kmeans) with method "gap_stat" error: did not converge in 10 itera
... The error occurs when you attempt to perform operations on objects of unequal dimensions. For example: c(1, 2, 3, 4) * c(10, 10, 10) [1] 10 20 30 40 Warning message: In c(1, 2, 3, 4) * c(10, 10, 10) : longer object length is not a multiple of shorter object length c(1 ...
written 1 day ago by Kevin Blighe21k
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Comment: C: Parallel computing while using R packages
... That's weird. Which parallel package version have you used? The authors do advertise that the function is parallel processing enabled? I had to edit the clusGap function in order to make it parallelised. Took a day to figure it out: https://github.com/kevinblighe/clusGapKB The authors never advert ...
written 1 day ago by Kevin Blighe21k
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Comment: C: Cogena framework for RNA-seq / minimum sample size
... Calling Zhilong Jia ...
written 1 day ago by Kevin Blighe21k
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Comment: C: How to manage self loops in gene coexpression network constructed from RNA-seq d
... Good point, zx8754 ...
written 1 day ago by Kevin Blighe21k

Latest awards to Kevin Blighe

Teacher 2 hours ago, created an answer with at least 3 up-votes. For A: Compare two columns of same file as paired rows
Scholar 6 hours ago, created an answer that has been accepted. For A: Cuffcompare output: thousands of novel transcripts
Scholar 1 day ago, created an answer that has been accepted. For A: Cuffcompare output: thousands of novel transcripts
Teacher 1 day ago, created an answer with at least 3 up-votes. For A: Cuffcompare output: thousands of novel transcripts
Scholar 1 day ago, created an answer that has been accepted. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Good Answer 2 days ago, created an answer that was upvoted at least 5 times. For A: Complex Heatmap: Changing order of clusters
Commentator 3 days ago, created a comment with at least 3 up-votes. For C: DESEQ analysis contain rlog formation?
Scholar 4 days ago, created an answer that has been accepted. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Appreciated 6 days ago, created a post with more than 5 votes. For Network plot from expression data in R using igraph
Commentator 7 days ago, created a comment with at least 3 up-votes. For C: bash and awk code
Appreciated 7 days ago, created a post with more than 5 votes. For Network plot from expression data in R using igraph
Scholar 7 days ago, created an answer that has been accepted. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Teacher 7 days ago, created an answer with at least 3 up-votes. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Teacher 8 days ago, created an answer with at least 3 up-votes. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Scholar 8 days ago, created an answer that has been accepted. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Teacher 8 days ago, created an answer with at least 3 up-votes. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Teacher 10 days ago, created an answer with at least 3 up-votes. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Scholar 11 days ago, created an answer that has been accepted. For A: Compare two columns of same file as paired rows
Appreciated 12 days ago, created a post with more than 5 votes. For Network plot from expression data in R using igraph
Teacher 12 days ago, created an answer with at least 3 up-votes. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Scholar 12 days ago, created an answer that has been accepted. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Teacher 13 days ago, created an answer with at least 3 up-votes. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Appreciated 13 days ago, created a post with more than 5 votes. For Network plot from expression data in R using igraph
Teacher 13 days ago, created an answer with at least 3 up-votes. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?
Teacher 13 days ago, created an answer with at least 3 up-votes. For A: How to use bcftools to calculate AF INFO field from AC and AN in VCF?

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