Moderator: Kevin Blighe
Kevin Blighe ♦ 30k
- Reputation:
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- Last seen:
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- Joined:
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Visiting Professor and Consultant Bioinformatician.
Incrocio le dita e spero.
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Developer / Maintainer of Bioconductor packages:
Posts by Kevin Blighe
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... Kia ora bro / dudette! ...
written 6 hours ago by
Kevin Blighe ♦ 30k
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Comment:
C: how to de-aggregate a table in R
... Hey lessismore, if other answers helped, then you can upvote / accept those, too. Please take a look at Chirag's ...
written 6 hours ago by
Kevin Blighe ♦ 30k
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C: how to de-aggregate a table in R
... Great work as usual, cpad. Enjoy your weekend. ...
written 6 hours ago by
Kevin Blighe ♦ 30k
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... When you use DESeq2, the differential expression analysis will be performed on the normalised, un-transformed counts. One then uses the variance-stabilising or regularised log transformation for downstream analyses, like PCA, MDS, hierarchical clustering / heatmap generation, *et cetera*. ...
written 1 day ago by
Kevin Blighe ♦ 30k
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... No - it does not really make it more understood at all. Can you please try a little harder? ...
written 1 day ago by
Kevin Blighe ♦ 30k
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... Thank you. Have you not done anything else in terms of QC? Are you literally paused here because you feel that there is an issue with the quality of the samples? You should at least proceed with your further analyses and then decide later if there may have been some problem. ...
written 1 day ago by
Kevin Blighe ♦ 30k
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... Ah, look at you, your own Moderator! :)
Try: `source("https://bioconductor.org/biocLite.R")`
(without ***www***)
If that still does not work, then try: `source("http://bioconductor.org/biocLite.R")`
(without ***http***)
If that does not work, then you can post on Stack Exchange ...
written 1 day ago by
Kevin Blighe ♦ 30k
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... There are many microarrays that specifically target copy number. Also, there is a long-running project, called AROMA, that has developed methods to derive copy number from SNP arrays. In this case, the user is indeed referring to a cDNA microarray that aims to measure gene expression. ...
written 1 day ago by
Kevin Blighe ♦ 30k
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... VCFtools has long been superseded by BCFtools. Please use that. If you have other questions, you may open your own question. ...
written 1 day ago by
Kevin Blighe ♦ 30k
1
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... Perhaps open a new question, and show that it has a definitive relationship to bioinformatics. ...
written 1 day ago by
Kevin Blighe ♦ 30k
Latest awards to Kevin Blighe
Scholar
1 day ago,
created an answer that has been accepted.
For A: How to change conditions in DESeq2
Appreciated
1 day ago,
created a post with more than 5 votes.
For A: How to change conditions in DESeq2
Teacher
2 days ago,
created an answer with at least 3 up-votes.
For A: How to change conditions in DESeq2
Good Answer
3 days ago,
created an answer that was upvoted at least 5 times.
For A: cox proportional hazard model
Scholar
3 days ago,
created an answer that has been accepted.
For A: How to change conditions in DESeq2
Scholar
5 days ago,
created an answer that has been accepted.
For A: How to change conditions in DESeq2
Appreciated
6 days ago,
created a post with more than 5 votes.
For A: How to change conditions in DESeq2
Scholar
6 days ago,
created an answer that has been accepted.
For A: How to change conditions in DESeq2
Appreciated
6 days ago,
created a post with more than 5 votes.
For A: How to change conditions in DESeq2
Appreciated
8 days ago,
created a post with more than 5 votes.
For R functions edited for parallel processing
Good Answer
8 days ago,
created an answer that was upvoted at least 5 times.
For A: cox proportional hazard model
Scholar
9 days ago,
created an answer that has been accepted.
For A: extract dendrogram cluster from pheatmap
Teacher
9 days ago,
created an answer with at least 3 up-votes.
For A: cox proportional hazard model
Teacher
10 days ago,
created an answer with at least 3 up-votes.
For A: cox proportional hazard model
Scholar
10 days ago,
created an answer that has been accepted.
For A: extract dendrogram cluster from pheatmap
Appreciated
11 days ago,
created a post with more than 5 votes.
For R functions edited for parallel processing
Scholar
11 days ago,
created an answer that has been accepted.
For A: extract dendrogram cluster from pheatmap
Scholar
11 days ago,
created an answer that has been accepted.
For A: extract dendrogram cluster from pheatmap
Teacher
11 days ago,
created an answer with at least 3 up-votes.
For A: cox proportional hazard model
Teacher
16 days ago,
created an answer with at least 3 up-votes.
For A: cox proportional hazard model
Scholar
16 days ago,
created an answer that has been accepted.
For A: extract dendrogram cluster from pheatmap
Teacher
16 days ago,
created an answer with at least 3 up-votes.
For A: cox proportional hazard model
Good Answer
16 days ago,
created an answer that was upvoted at least 5 times.
For A: cox proportional hazard model
Good Answer
17 days ago,
created an answer that was upvoted at least 5 times.
For A: cox proportional hazard model
Good Answer
19 days ago,
created an answer that was upvoted at least 5 times.
For A: cox proportional hazard model
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