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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000genomes PLINK PCA
updated 9 months ago by • 0 • written 7.0 years ago by 89k
13
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9
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9.6k
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6 follow
Tutorial: STARsolo config for 10x Chromium v1, v2, v3
Chromium 10x STARsolo STAR
updated 12 months ago by 153k • written 5.0 years ago by 89k
0
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0
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758
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Answer: Answer: Met 500 data
12 months ago by Kevin Blighe 89k
0
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0
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1.2k
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Comment: Comment: How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
12 months ago by Kevin Blighe 89k
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0
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4.8k
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Comment: Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
12 months ago by Kevin Blighe 89k
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0
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1.0k
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Answer: Answer: 3 samples (control) vs 3 samples (condition) 100M coverage data
12 months ago by Kevin Blighe 89k
0
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0
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1.1k
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Answer: Answer: Explaining my heatmap for PC1 and my PC2 with gene list
12 months ago by Kevin Blighe 89k
1
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0
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1.1k
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Answer: Answer: How to deal with warnings from PLINK while performing QC using HAPMAP data ?
12 months ago by Kevin Blighe 89k
0
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0
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1.0k
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Answer: Answer: GWAS on traits non-normally distributed
12 months ago by Kevin Blighe 89k
0
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0
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3.0k
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Answer: Answer: DEseq2 on expected counts
12 months ago by Kevin Blighe 89k
0
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0
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830
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Answer: Answer: VCF files
12 months ago by Kevin Blighe 89k
1
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0
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706
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Answer: Answer: Values of relatedness matrix exceed 0 and 1
12 months ago by Kevin Blighe 89k
0
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1
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1.9k
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Answer: Answer: rna-seq heatmap z-score calculation - TPM?
12 months ago by Kevin Blighe 89k
0
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1
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4.8k
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Comment: Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
12 months ago by Kevin Blighe 89k
0
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1
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1.6k
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Comment: Comment: PLINK error doing a GWAS
12 months ago by Kevin Blighe 89k
0
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1
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1.5k
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Answer: Answer: Analyzing PCA Clustering from PLINK Output
12 months ago by Kevin Blighe 89k
0
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2
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4.8k
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Answer: Answer: Current best practive to liftOver many SNVs from hg19 to GRCh38
12 months ago by Kevin Blighe 89k
1
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1
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1.4k
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Answer: Answer: gene naming
12 months ago by Kevin Blighe 89k
0
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0
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1.1k
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Answer: Answer: Affymetrix microarray
12 months ago by Kevin Blighe 89k
0
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0
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900
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Answer: Answer: Why does 1 variant produce 3 genes as a result?
12 months ago by Kevin Blighe 89k
0
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0
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1.4k
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Answer: Answer: Batch correction in RNAseq
12 months ago by Kevin Blighe 89k
2
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0
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882
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Answer: Answer: WGCNA - dendogram: How to interpret alterations of clusters
12 months ago by Kevin Blighe 89k
0
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0
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1.1k
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Answer: Answer: Batch Effect Correction in RNA-seq Data Using SVA and DESeq2
12 months ago by Kevin Blighe 89k
8
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4
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4.9k
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Tutorial: Automated dbSNP lookup by rsID position, plus genome build liftover
rsid hg19 liftover hg38 dbsnp
updated 13 months ago by • 0 • written 3.1 years ago by 89k
0
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2
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1.4k
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Answer: Answer: Volcano plot with different font size for gene labels
updated 15 months ago by 45k • written 15 months ago by 89k
1
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1
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1.1k
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Comment: Comment: FDA approved Biomarker database access
15 months ago by Kevin Blighe 89k
0
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0
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1.3k
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Comment: Comment: Bulk rna sequencing
15 months ago by Kevin Blighe 89k
0
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0
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1.3k
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Comment: Comment: Bulk rna sequencing
15 months ago by Kevin Blighe 89k
0
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1
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1.1k
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Answer: Answer: FDA approved Biomarker database access
15 months ago by Kevin Blighe 89k
0
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0
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2.1k
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Answer: Answer: Heatmap and rna-seq
17 months ago by Kevin Blighe 89k
0
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0
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25k
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Comment: Comment: Clustering of DAVID gene enrichment results from gene expression studies
17 months ago by Kevin Blighe 89k
76
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72
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25k
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19 follow
Tutorial: Clustering of DAVID gene enrichment results from gene expression studies
enrichment david
17 months ago by Kevin Blighe 89k
1
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1
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994
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Comment: Comment: WGCNA
17 months ago by Kevin Blighe 89k
2
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1
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910
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Answer: Answer: Convert to ENTREZGENE
updated 17 months ago by 45k • written 17 months ago by 89k
10
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6
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6.2k
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Tutorial: CorLevelPlot - Visualise correlation results, e.g., clinical parameter correlations
correlation corlevelplot
updated 17 months ago by 45k • written 7.6 years ago by 89k
2
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1
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1.1k
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Answer: Answer: Microarray analysis using Limma
20 months ago by Kevin Blighe 89k
0
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1
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3.7k
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Comment: Comment: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
updated 20 months ago by 45k • written 20 months ago by 89k
0
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0
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2.2k
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Comment: Comment: Deseq2 returned the same p-adj for several genes
updated 20 months ago by 45k • written 20 months ago by 89k
0
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1
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2.2k
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Comment: Comment: Deseq2 returned the same p-adj for several genes
updated 20 months ago by 45k • written 20 months ago by 89k
0
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1
reply
2.2k
views
Comment: Comment: Deseq2 returned the same p-adj for several genes
updated 20 months ago by 45k • written 20 months ago by 89k
4
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1
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1.4k
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Answer: Answer: ICD9 versus ID10 in UK BRAP
20 months ago by Kevin Blighe 89k
1
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1
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2.2k
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Comment: Comment: Deseq2 returned the same p-adj for several genes
updated 20 months ago by 45k • written 20 months ago by 89k
1
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1
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2.2k
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Answer: Answer: Deseq2 returned the same p-adj for several genes
updated 20 months ago by 45k • written 20 months ago by 89k
0
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1
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2.3k
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Answer: Answer: Define enhancer regions
20 months ago by Kevin Blighe 89k
0
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0
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1.7k
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Comment: Comment: Log2 transformation is well used, but is there a good paper that can be used as
20 months ago by Kevin Blighe 89k
0
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1
reply
844
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Answer: Answer: Ideas to identify unique genes of each brain regions
20 months ago by Kevin Blighe 89k
1
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1
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1.4k
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Answer: Answer: filtering low expressed gene in microarray for WGCNA
20 months ago by Kevin Blighe 89k
1
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2
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1.6k
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Comment: Comment: Quantile normalisation on RNAseq with substantial differences on sample size
20 months ago by Kevin Blighe 89k
0
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1
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1.6k
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Comment: Comment: Can I remove all variants in a vcf file that have 0/0 for PRS calculation?
20 months ago by Kevin Blighe 89k
1
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0
replies
965
views
Answer: Answer: What is the expression value of GSE29609 in GEO database
20 months ago by Kevin Blighe 89k
9,861 results • Page 1 of 198
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