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1.1k
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190
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37k
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104 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software Forum
updated 10 weeks ago by ▴ 830 • written 10.3 years ago by 20k
606
votes
156
replies
69k
views
92 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
handbook tutorial training News
updated 18 days ago by 170 • written 4.6 years ago by 88k
344
votes
80
replies
125k
views
32 follow
Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
tools parallel next-gen ngs Tool
7 months ago by ole.tange ★ 4.0k
342
votes
57
replies
45k
views
43 follow
Recommend Your Favorite Bioinformatics Books
books education
written 11.4 years ago by 88k
318
votes
53
replies
49k
views
44 follow
What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
visualization genome
updated 3 months ago by ▴ 70 • written 11.4 years ago by 23k
310
votes
65
replies
18k
views
48 follow
Your Favorite Bioinformatics Blogs (March 2010)
subjective
updated 3.1 years ago by ▴ 590 • written 11.4 years ago by 27k
298
votes
77
replies
177k
views
49 follow
Tools To Calculate Average Coverage For A Bam File?
coverage bam sequencing
updated 3.0 years ago by 45k • written 10.5 years ago by 4.8k
290
votes
55
replies
11k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 4 weeks ago by 34k • written 8.2 years ago by 8.6k
288
votes
115
replies
18k
views
29 follow
Mean Length Of Fasta Sequences
code fasta sequence codegolf
updated 3 months ago by ▴ 70 • written 11.0 years ago by 11k
283
votes
64
replies
15k
views
44 follow
Bioinformatics "Cheat Sheet"
written 10.4 years ago by 21k
279
votes
69
replies
16k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective Forum
updated 6.1 years ago by ▴ 10 • written 10.0 years ago by ▴ 160
276
votes
26
replies
35k
views
31 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing Forum papers Tutorial
3.6 years ago by CandiceChuDVM ★ 2.2k
258
votes
47
replies
17k
views
35 follow
Forum: Bioinformatics courses, workshops or training
Training Workshop Tutorial Courses Forum
3.2 years ago by Deepak Tanwar ★ 4.1k
257
votes
40
replies
131k
views
29 follow
Tutorial: How to download raw sequence data from GEO/SRA
GEO SRA fastq bam download Tutorial
updated 5 weeks ago by 34k • written 6.9 years ago by 19k
249
votes
36
replies
26k
views
27 follow
How Do You Manage Your Files & Directories For Your Projects ?
file
updated 8 weeks ago by ★ 6.0k • written 11.3 years ago by 137k
243
votes
36
replies
6.7k
views
32 follow
Forum: Good Habit for Bioinformatics Analyst or Scientist
Habit Analyst Scientist Forum
4.5 years ago by Shicheng Guo ★ 8.7k
232
votes
32
replies
70k
views
22 follow
Tutorial: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
coordinates tutorial Tutorial
updated 5 months ago by ▴ 10 • written 7.8 years ago by 19k
232
votes
45
replies
66k
views
34 follow
What Is The Best Pipeline For Human Whole Exome Sequencing?
next-gen sequencing illumina exome human
updated 6.5 years ago by ▴ 40 • written 11.2 years ago by 4.8k
231
votes
29
replies
196k
views
23 follow
How To Filter Mapped Reads With Samtools
samtools
updated 3 months ago by • 0 • written 8.7 years ago by ▴ 530
229
votes
175
replies
70k
views
72 follow
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
RNA-Seq TCGA Survival Tutorial
updated 4 months ago by 34k • written 6.0 years ago by ★ 4.4k
222
votes
38
replies
266k
views
31 follow
Gene Id Conversion Tool
mapping conversion
updated 17 months ago by ▴ 90 • written 11.8 years ago by ▴ 620
205
votes
31
replies
115k
views
24 follow
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
genome coordinates conversion liftover ensembl Tool
updated 3 months ago by ▴ 200 • written 8.4 years ago by 19k
202
votes
41
replies
21k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics Forum cram gatk galaxy
updated 6.7 years ago by 88k • written 6.7 years ago by ★ 4.9k
201
votes
55
replies
35k
views
30 follow
Forum: Will Python Take The Place Of R?
r python biopython statistics Forum
updated 3.7 years ago by ★ 11k • written 8.2 years ago by 8.9k
195
votes
27
replies
25k
views
20 follow
Bioinformatic Cartoon
bioinformatics
updated 7.4 years ago by 20 • written 9.6 years ago by ★ 2.3k
187
votes
89
replies
12k
views
25 follow
Forum: Petition to demand that the Federal German Government release all genomic data on SARS-COV-2
GISAID Forum
updated 26 days ago by ▴ 40 • written 16 months ago by 88k
184
votes
45
replies
27k
views
27 follow
How To Organize A Pipeline Of Small Scripts Together?
general pipeline
updated 3.0 years ago by 20 • written 11.4 years ago by 27k
183
votes
46
replies
62k
views
30 follow
Tutorial: Analysing Microarray Data In Bioconductor
tutorial bioconductor microarray analysis tutorial Tutorial
updated 14 months ago by • 0 • written 8.8 years ago by 19k
183
votes
43
replies
72k
views
29 follow
Drawing Chromosome Ideograms With Data
chromosome visualization ideogram
updated 3.7 years ago by ★ 3.1k • written 11.4 years ago by ★ 1.6k
179
votes
51
replies
14k
views
26 follow
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen sequencing galaxy
updated 8.0 years ago by ▴ 600 • written 10.7 years ago by 137k
177
votes
50
replies
59k
views
39 follow
How To Remove The Same Sequences In The Fasta Files?
fasta sequence duplicates
updated 2.7 years ago by ▴ 60 • written 10.8 years ago by ▴ 290
171
votes
26
replies
5.3k
views
12 follow
How Do You Acknowledge Biostar And Its Contributors In Your Research Output?
biostar meta
updated 9.2 years ago by 16k • written 10.4 years ago by 3.2k
170
votes
34
replies
20k
views
29 follow
Recommend Your Favorite Introductory "R In Bioinformatics" Books And Resources
r bioconductor books
updated 6.7 years ago by ★ 1.5k • written 11.3 years ago by 49k
166
votes
30
replies
81k
views
17 follow
What Is The Best Method To Find Orthologous Genes Of A Species?
orthologues
updated 6.8 years ago by ★ 2.5k • written 10.3 years ago by ▴ 560
162
votes
73
replies
48k
views
34 follow
How To Efficiently Parse A Huge Fastq File?
next-gen sequencing fastq parsing
updated 6.9 years ago by • 0 • written 10.0 years ago by ★ 1.7k
156
votes
21
replies
14k
views
17 follow
Forum: Advice For Newcomers To The Bioinformatics Field
bioinformatics Forum
updated 3.0 years ago by • 0 • written 8.1 years ago by 8.9k
153
votes
27
replies
8.2k
views
21 follow
The Best Question To Ask In A Bioinformatics Seminar
subjective
updated 10.5 years ago by ★ 1.1k • written 10.6 years ago by 27k
152
votes
32
replies
5.9k
views
23 follow
Picking A Programming Language And Where To Begin
programming next-gen sequencing c subjective
updated 9.5 years ago by ▴ 60 • written 10.0 years ago by ★ 2.8k
151
votes
17
replies
21k
views
13 follow
What Are The Big Questions That Bioinformatics And Computational Biology Will Be Answering In The Next Few Years?
6.3 years ago by Sean Davis 26k
151
votes
19
replies
141k
views
9 follow
Forward And Reverse Strand Conventions
sequence strand
updated 10.5 years ago by 49k • written 10.7 years ago by ★ 2.7k
151
votes
44
replies
23k
views
29 follow
Which Bioinformatic Friendly Pipeline Building Framework?
scripting
2.8 years ago by Carlos Borroto ★ 1.9k
150
votes
39
replies
20k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics Forum
updated 3.8 years ago by 75k • written 8.5 years ago by 3.0k
150
votes
59
replies
58k
views
34 follow
Selecting Random Pairs From Fastq?
random fastq sequence illumina code
updated 5.3 years ago by ▴ 40 • written 10.4 years ago by 4.1k
149
votes
42
replies
162k
views
22 follow
How Do I Draw A Heatmap In R With Both A Color Key And Multiple Color Side Bars?
heatmap r
updated 2.1 years ago by • 0 • written 9.4 years ago by 19k
147
votes
24
replies
56k
views
19 follow
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
splicing tools rna-seq alternative-splicing
updated 3.3 years ago by ★ 3.6k • written 8.4 years ago by 9.5k
146
votes
39
replies
65k
views
24 follow
Multiline Fasta To Single Line Fasta
sequence fasta
updated 3.5 years ago by ▴ 30 • written 10.1 years ago by ▴ 220
145
votes
34
replies
51k
views
31 follow
Tutorial: Tools For Metagenomic Data Analysis
metagenomics next-gen tutorial Tutorial
updated 4 months ago by ▴ 120 • written 8.7 years ago by ★ 1.6k
145
votes
56
replies
6.6k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostar Forum
updated 8.2 years ago by 49k • written 8.3 years ago by 88k
145
votes
52
replies
98k
views
28 follow
Fastq Convert To Fasta
perl
updated 21 months ago by ▴ 50 • written 7.7 years ago by ★ 1.3k
144
votes
62
replies
8.0k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
biostar meta statistics Forum
updated 4.1 years ago by 49k • written 10.4 years ago by ★ 2.9k
93,678 results • Page 1 of 1874
Recent Votes
C: Is indel realigning necessary for INDEL discovery?
A: Is indel realigning necessary for INDEL discovery?
Enhanced Volcano removal of labels
A: Enhanced Volcano removal of labels
Answer: What does that dip in the density plot mean from a single cell data analysis?
Comment: What does that dip in the density plot mean from a single cell data analysis?
Answer: What does that dip in the density plot mean from a single cell data analysis?
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Recent Replies
Comment: gene expression of specifics gene by Bioinformatics1 • 0
I have log2(Fold Change) for two groups. Is there any instruction/pipelines I can use for gene expression using log2(Fold Change) in R? M…
Answer: use a list of id to extract sequence from different genomics by Pierre Lindenbaum 137k
[linearize][1] and extract the ID at the same time, sort both list, join, restore the fasta: join -t $'\t' -1 1 -2 1 \ <…
Comment: use a list of id to extract sequence from different genomics by LZH289 • 0
thank you!
Comment: What does betaPrior do in DESEQ? by i.sudbery 12k
Those DE genes - is that after a log fold change cut off?
Comment: How to filter VEP results of "missing values" by Yiming • 0
Thank you so much! I found an error with my code. And this works: filter_vep -i VEP_annotated.vcf -o VEP_filtered.vcf --format vcf --fo…
Comment: use a list of id to extract sequence from different genomics by GenoMax 104k
Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. <br /> <img src="…
Comment: gnomaAD exome and genome AF differences by humzakhan340 • 0
The point that genomes are much larger and more computationally intensive to work with is well-taken. However, promoter information is not…
Comment: ERROR [mem_sam_pe] paired reads have different names -- during binning in metaW by swbarnes2 10k
Do you understand what the problem is? Have you figured out which step introduced it?
Comment: gene expression of specifics gene by Bioinformatics1 • 0
Thanks Hyper-Odin
Comment: inquiry related to snpsift by rheab1230 • 0
I have one question related to earlier step where you are formating the .vcf file. You are removing white space and removing format tags ex…
Comment: inquiry related to snpsift by rheab1230 • 0
Hey Kevin, its working now. Earlier I use conda to install the software. But that is not working. So I went to bcftools site and downloaded…
Comment: What does that dip in the density plot mean from a single cell data analysis? by m.sadman.sakib ▴ 100
Thank you very much for the great explanation! Really appreciate it!
Comment: Which method is the best for using in "dba.count" in Diffbind R package by m.sadman.sakib ▴ 100
Thank you very much, Rory!
Comment: How to merge folders that have similar (not the same) names, in a folder keeping by cpad0112 16k
**Before** ``` $ tree . . ├── 123_S1_R1_001 │   └── 123_S1_R1_001.fastq.gz ├── 123_S1_R2_001 │   └── 123_S1_R2_001.fastq.gz ├── 456_S25_R1…
Comment: SNP density plot of aedes genome using bed file by Hamid Ghaedi ★ 1.7k
There is no figure to look at that!
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