User: sapuizait

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sapuizait0
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Posts by sapuizait

<prev • 8 results • page 1 of 1 • next >
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Answer: A: RNASeq user experience with Novogene?
... Thanks everyone for the feedback , i m weighing the decision of sending my precious samples for shotgun metagenomics to novogene or not. My issue is that I have had very very very very bad experience with bgi. my previous lab worked extensively with them and i cannot stretch enough how bad the commu ...
written 10 weeks ago by sapuizait0
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Comment: C: RNASeq user experience with Novogene?
... damn, what sequencing did you do? was it 16S? RNAseq? did you find out why the difference? was there a quality issue? or samples got contaminated? ...
written 10 weeks ago by sapuizait0
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diamond (blast) exit codes
... Does anyone know where I can find what the exit codes mean? is there a list or a website? Trying to run a $diamond blastp and I am getting an exit code -6 and I have no idea what this means. I also looked around and I cant find anything, cant believe I am the only one I ve ever gotten this error. C ...
exit codes diamond written 6 months ago by sapuizait0
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Comment: A: Shotgun rarefactions - metagenomics (microbiome), MetaPhlAn2
... Thanks for this post robert.kwapich, this is a critical step if u wanna compare groups of samples that have been shotgun-metagenome sequenced! My intitial instinct was to rarefy based on single copy housekeeping bacterial genes or the ykaryotic contamination but i dont wanna reinvent the wheel if th ...
written 7 months ago by sapuizait0
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Comment: A: How/Where do I find mapped GO terms in EggNOG (preferably via FTP download)?
... Thank you, I ve been looking for that for some time now and it was driving me crazy! still cannot find the KEGG identifiers, they mention that it should be there but I cant see it - it could be that its right in front of me and I dont see :) thanks again ...
written 8 months ago by sapuizait0 • updated 6 weeks ago by zx87549.6k
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Answer: A: Has anyone heard the term data warehousing in genomics before?
... Thank you both, you guys have been extremely helpful! ...
written 22 months ago by sapuizait0
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Comment: C: Has anyone heard the term data warehousing in genomics before?
... ok I see, I also saw some videos on youtube about biomart. It is thus not so different from other sites that they are "normal" databases. Is the only difference the bigger amount of data and the multiple databases? ...
written 22 months ago by sapuizait0
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Has anyone heard the term data warehousing in genomics before?
... There is a job opening that I want to apply for and they mention among other skills "data warehousing knowledge". The job description says that the job has to do with gathering and managing genomics data from hospitals related to cancer but I am not sure what do they mean with the "data warehouse" t ...
warehouse data written 22 months ago by sapuizait0

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