Question: Your Favorite Bioinformatics Blogs (March 2010)
40
gravatar for Giovanni M Dall'Olio
4.1 years ago by
London, UK
Giovanni M Dall'Olio17k wrote:

I think that for a professional is very important to follow blogs focused on his own speciality, it is a good way to learn without too much effort and to stay updated. Which bioinformatics-related blogs do you usually read?

note: there is a similar question posted on stackoverflow.

Note:

ADD COMMENTlink modified 10 months ago • written 4.1 years ago by Giovanni M Dall'Olio17k
1

ok, I have changed the title to the plural form: "blogs" instead of "blog". So, provide us all your favorite links! :-)

ADD REPLYlink written 3.1 years ago by Giovanni M Dall'Olio17k

Why is this tagged off-topic? Can somebody explain this, please.

ADD REPLYlink written 2.2 years ago by Michael Dondrup27k
32
gravatar for Giovanni M Dall'Olio
4.1 years ago by
London, UK
Giovanni M Dall'Olio17k wrote:

Blogs:

Moreover, I also find useful to follow the blogs from many bioinformatics services or databases:

ADD COMMENTlink modified 4.1 years ago • written 4.1 years ago by Giovanni M Dall'Olio17k
21
gravatar for Pierre Lindenbaum
4.1 years ago by
France
Pierre Lindenbaum58k wrote:

mine of course ! :-) http://plindenbaum.blogspot.com

See also: Bioinformatics blogs on Nature-blogs: http://blogs.nature.com/blogs?tags=bioinformatics

And the life-scientists group on FriendFeed: http://friendfeed.com/the-life-scientists

ADD COMMENTlink written 4.1 years ago by Pierre Lindenbaum58k
19
gravatar for Thomas Schwarzl
2.8 years ago by
Thomas Schwarzl190 wrote:

There are so many great blogs out there, I love Openhelix blog, and many others already listed. But reading all blogs takes ages, though I have everything fed into my Google Reader.

That's the reason why last week we started our new community-based project biotricks.net, which is a meta-blog linking out to interesting tips, tricks, and tools for bioinformaticians but also hosts own articles, scripts, code lines, etc.

At the moment it is quite basic, but like BioStar it will become more interesting the more people are using it.

So please support and contribute to this project. Thanks.

http://www.biotricks.net

ADD COMMENTlink modified 2.8 years ago • written 2.8 years ago by Thomas Schwarzl190

I linked it on the bioinformatics subreddit (http://redd.it/i64rn). Hopefully it will get some exposure there. Success with the project!

ADD REPLYlink written 2.8 years ago by Jeroen Van Goey1.8k

Good one. Bookmarked it.

ADD REPLYlink written 2.8 years ago by Woa2.1k

Great, Jeroen. Thanks for that. Thumbs up for you guys. Thanks for the support.

ADD REPLYlink written 2.8 years ago by Thomas Schwarzl190
18
gravatar for Jeroen Van Goey
4.1 years ago by
Jeroen Van Goey1.8k
Antwerp, Belgium
Jeroen Van Goey1.8k wrote:

Shameless plug for the bioinformatics subreddit (of which I am a moderator).

ADD COMMENTlink written 4.1 years ago by Jeroen Van Goey1.8k

Since this was chosen as the top answer, I've added a link to BioStar in the sidebar of the bioinformatics subreddit.

ADD REPLYlink written 4.1 years ago by Jeroen Van Goey1.8k

Thank you that's really nice.

ADD REPLYlink written 4.1 years ago by Istvan Albert ♦♦ 39k
13
gravatar for Alex
4.1 years ago by
Alex190
Alex190 wrote:

http://biostar.stackexchange.com

ADD COMMENTlink written 4.1 years ago by Alex190

eheh :-) this sounds familiar...

ADD REPLYlink written 4.1 years ago by Giovanni M Dall'Olio17k

Hi everyone, slightly unrelated note. Remember to vote on posts, questions if you like them. That is the way to accumulate reputation that in the end allows the users to moderate content (see FAQ for more info). Also it is recommended to select the best answer for a question.

ADD REPLYlink written 4.1 years ago by Istvan Albert ♦♦ 39k
13
gravatar for Suk211
4.1 years ago by
Suk211940
state college
Suk211940 wrote:

A friend of mine is a very active blogger in bioinformatics. This is his blog site

Fisheye Perspective

He has also complied a list of bioinformatics and chemo informatics blogs which are very popular. some of you might be interested in it.

30+ Blogs about Bioinformatics and Chemoinformatics Programming

ADD COMMENTlink written 4.1 years ago by Suk211940

Abhishek's is one of the bests :-)

ADD REPLYlink written 4.1 years ago by Giovanni M Dall'Olio17k

That is a good list

ADD REPLYlink written 4.1 years ago by Michael Barton1.7k
12
gravatar for Istvan Albert
4.1 years ago by
Istvan Albert ♦♦ 39k
University Park, USA
Istvan Albert ♦♦ 39k wrote:

Here is one that I follow, but I'm interested in adding more blogs to my feed:

ADD COMMENTlink written 4.1 years ago by Istvan Albert ♦♦ 39k
1

Second that. Good one for python

ADD REPLYlink written 4.1 years ago by Michael Barton1.7k

agreed, brad does interesting stuff.

ADD REPLYlink written 4.0 years ago by brentp17k
11
gravatar for Zach Stednick
4.0 years ago by
Zach Stednick520
Seattle, WA
Zach Stednick520 wrote:

Getting genetics done, covers more than just bioinformatics and is a bit heavy on the GWAS but overall is a well-done blog.

ADD COMMENTlink written 4.0 years ago by Zach Stednick520
9
gravatar for Michael Barton
4.1 years ago by
Michael Barton1.7k
Akron, Ohio, United States
Michael Barton1.7k wrote:

Very large list of bioinformatics blogs from the now defunct Nodalpoint wiki

ADD COMMENTlink written 4.1 years ago by Michael Barton1.7k
9
gravatar for Treylathe
3.6 years ago by
Treylathe890
San Francisco
Treylathe890 wrote:

Shameless plug for the OpenHelix blog. We talk about databases and resources in genomics/bioinformatics for the end user/experimental biologist, have tips of the week, etc.

In addition to some mentioned above, I like business|bytes|genes|molecules

ADD COMMENTlink written 3.6 years ago by Treylathe890

Very useful for graduate students (and bioinformatics librarians)

ADD REPLYlink written 3.6 years ago by Natalie0

Jap, it's also my favourite too

ADD REPLYlink written 3.6 years ago by Markus Krupp80
8
gravatar for Darked89
4.1 years ago by
Darked893.5k
Barcelona, Spain
Darked893.5k wrote:

Maybe not The Greatest but these few are covering next gen sequencing:

http://www.massgenomics.org/

http://www.fejes.ca/labels/DNA.html

http://omicsomics.blogspot.com/

ADD COMMENTlink modified 2.9 years ago • written 4.1 years ago by Darked893.5k

For bioinformatics for cancer research, Dan's blog is very up to date and presented extremely well.

ADD REPLYlink modified 21 months ago • written 21 months ago by Vivek380
7
gravatar for Bongsoo Park
3.6 years ago by
Bongsoo Park70
Pennsylvania, USA
Bongsoo Park70 wrote:

I like the OpenHelix Blog. :D

http://blog.openhelix.eu/

ADD COMMENTlink written 3.6 years ago by Bongsoo Park70
6
gravatar for Manuel Corpas
4.1 years ago by
Manuel Corpas620
Cambridge
Manuel Corpas620 wrote:

http://manuelcorpas.com/

ADD COMMENTlink written 4.1 years ago by Manuel Corpas620

Your blog has been voted among the top 15 Bioinformatics blogs in 2010. Congrats!

ADD REPLYlink written 4.1 years ago by Istvan Albert ♦♦ 39k

Many thanks! Manuel

ADD REPLYlink written 4.1 years ago by Manuel Corpas620
5
gravatar for Larry_Parnell
3.6 years ago by
Larry_Parnell15k
Boston, MA USA
Larry_Parnell15k wrote:

A lot has been written above, so I'll add something different. One reason to follow a blog is to be a part of the conversation or simply to "listen in." This is why we go to conferences. And so, I think that one should also be on Twitter in order to do the same - listen and add to the conversation. Clearly, Twitter and a blog are different formats and come to you in different ways, but they are both useful tools in getting you connected to other people and their ideas, as well as putting yourself into the conversation.

@larry_parnell varigenome.blogspot.com

ADD COMMENTlink written 3.6 years ago by Larry_Parnell15k
5
gravatar for Casey Bergman
2.9 years ago by
Casey Bergman14k
Manchester, UK
Casey Bergman14k wrote:

A few not mentioned yet here that are in my google reader are:

http://saaientist.blogspot.com/

http://researchremix.wordpress.com/

http://duncan.hull.name/

http://larsjuhljensen.wordpress.com/

ADD COMMENTlink written 2.9 years ago by Casey Bergman14k
5
gravatar for Luca Cerone
2.8 years ago by
Luca Cerone50
Luca Cerone50 wrote:

Hi, I found some interesting posts on http://www.biotricks.net/ The blog is quite new, and there are many interesting guides, for beginners and the curious. Definitively will keep following it!

ADD COMMENTlink written 2.8 years ago by Luca Cerone50
4
gravatar for Rm
3.6 years ago by
Rm6.5k
US
Rm6.5k wrote:

RNA-Seq Blog

Weblog on Bioinformatics, Genome Science, Next Generation Sequencing

ADD COMMENTlink written 3.6 years ago by Rm6.5k
4
gravatar for Ajene
3.1 years ago by
Ajene70
Barcelona
Ajene70 wrote:

Well, more than "favourite" blog I can list the ones I like (this is, the ones that passed the filter and I'm still following). Apart from Giovanni's and Pierre's, and other more technical blogs already mentioned, I'm interested in the sequencing technologies, personal genomes and publication ethics. This is then my small list:

http://nsaunders.wordpress.com/ - Bioinformatics and other stuff

http://cameronneylon.net/ - On communicating science

http://www.genomesunzipped.org/ - On personalized Genomics

Can't help to add a shameless plug to our group's blog on Computational OncoGenomics: http://bg.upf.edu/blog/

ADD COMMENTlink written 3.1 years ago by Ajene70

thank you Alba!! I saw your blog a while ago but I didn't notice that now you have started blogging on it actively. I will add it to my rss feeder :-)

ADD REPLYlink written 3.1 years ago by Giovanni M Dall'Olio17k
3
gravatar for Mary
3.6 years ago by
Mary9.2k
Boston MA area
Mary9.2k wrote:

I just remembered this--there's a good thread on blogs in this arena from the SEQanswers forum:

http://seqanswers.com/forums/showthread.php?t=5024

ADD COMMENTlink written 3.6 years ago by Mary9.2k
3
gravatar for Egon Willighagen
3.6 years ago by
Maastricht
Egon Willighagen4.6k wrote:

I am quite keen of some of the in-depth blogs about metabolomics, such as this blog by Gilleain around metabolite identification.

ADD COMMENTlink written 3.6 years ago by Egon Willighagen4.6k
3
gravatar for Fred Fleche
3.1 years ago by
Fred Fleche3.7k
Paris, France
Fred Fleche3.7k wrote:

My little contribution to the Bioinformatics Field: http://www.bioinformatics.fr

ADD COMMENTlink written 3.1 years ago by Fred Fleche3.7k
3
gravatar for Woa
2.9 years ago by
Woa2.1k
United States
Woa2.1k wrote:

Macromolecular Modeling Blog

Python for Bioinformatics

ADD COMMENTlink written 2.9 years ago by Woa2.1k

http://jeffreyliu99.blogspot.com : A good blog for proteomics

ADD REPLYlink written 2.9 years ago by Woa2.1k

http://bridgecrest.blogspot.com/

ADD REPLYlink written 2.0 years ago by Woa2.1k
2
gravatar for Nir London
2.9 years ago by
Nir London210
Nir London210 wrote:

As WoA Nicely put: the Macromolecular Modeling Blog other related blogs I read (but don't write at): sort of ranked by relevance to structural bioinformatics:

Some update more routinely than others.. What other computational structural biology blogs you know ?

ADD COMMENTlink written 2.9 years ago by Nir London210
2
gravatar for Jun
2.8 years ago by
Jun20
Jun20 wrote:

http://www.biotricks.net/ is definitely worthwhile to try.

ADD COMMENTlink written 2.8 years ago by Jun20
2
gravatar for Anuraj Nayarisseri
2.6 years ago by
Indore
Anuraj Nayarisseri620 wrote:

http://www.bioinformatics.fr/

ADD COMMENTlink written 2.6 years ago by Anuraj Nayarisseri620
2
gravatar for Homologus
2.5 years ago by
Homologus20
Homologus20 wrote:

We started a blog at http://www.homolog.us to write on transcriptomics and next-gen sequencing. Here is a brief description of our objectives.

ADD COMMENTlink written 2.5 years ago by Homologus20
2
gravatar for cba
23 months ago by
cba20
cba20 wrote:

This one has just started but contains interesting media files and source code:

http://bio-tools.org/

ADD COMMENTlink written 23 months ago by cba20
1
gravatar for Sptaylor
3.3 years ago by
Sptaylor90
Los Angeles
Sptaylor90 wrote:

I like Getting Genetics Done available here: http://gettinggeneticsdone.blogspot.com/

ADD COMMENTlink written 3.3 years ago by Sptaylor90
1
gravatar for Amit Vikram Singh
2.9 years ago by
Amit Vikram Singh10 wrote:

Every thing and anything related to Bioinformatics ...Jobs in Bioinformatics, Bio Java, Bio Ruby, Sequencing, Free Downloads, Video tutorials http://amitvikram-bioinformatics.blogspot.com/

ADD COMMENTlink written 2.9 years ago by Amit Vikram Singh10
1
gravatar for Radhouane Aniba
2.9 years ago by
Radhouane Aniba720 wrote:

Biocoders.net is actually mine, additionnaly to a being a blog i am using it as a strong online collaboration tool, synchronizing my social networks with it, it is :

Facebook Linkedin Twitter Github Sourcefoge

Like all in one web app.

Rad

ADD COMMENTlink modified 2.8 years ago • written 2.9 years ago by Radhouane Aniba720
1
gravatar for Charles Warden
10 months ago by
Charles Warden2.2k
Los Angeles, CA
Charles Warden2.2k wrote:

Here is what I read on a regular basis:

http://core-genomics.blogspot.com - "personal blog written by James Hadfield who runs a Genomics core facility Cambridge" - lots of interesting technical details about next-generation sequencing

http://massgenomics.org - medical genomics blog by Dan Koboldt, a staff scientist at the Genome Institute at Washington University

http://www.genomesunzipped.org - popular blog run by several genomics researchers

http://blog.openhelix.eu - as mentioned in other responses, this covers tutorials and FAQs for common bioinformatics tools

http://gettinggeneticsdone.blogspot.com - as mentioned in other responses, a well-maintained blog written mostly by Stephen Turner (Bioinformatics Core director at University of Virginia)

Also, I am baised, but I also have my own blog:

http://cdwscience.blogspot.com - My Biomedical Informatics Blog

ADD COMMENTlink written 10 months ago by Charles Warden2.2k

Thank you for your links. Note that we did another version of this discussion in 2011 (Your favorite bioinformatics blogs (October 2011) ). Maybe we should do another for 2013.

ADD REPLYlink written 10 months ago by Giovanni M Dall'Olio17k

Ok, thanks - I have copied and modified this post for the 2013 edition:

Your Favorite Bioinformatics Blog(s) (2013 edition)

ADD REPLYlink written 10 months ago by Charles Warden2.2k

This is mine, Bio <> Chem http://cdsouthan.blogspot.se/

ADD REPLYlink written 10 months ago by cdsouthan840
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