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User: Jessica_bioinfo

gravatar for Jessica_bioinfo
Reputation:
10
Status:
New User
Location:
Texas, USA
Last seen:
14 hours ago
Joined:
4 weeks ago
Email:
k**@temple.edu

Posts by Jessica_bioinfo

<prev • 63 results • page 1 of 7 • next >
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Comment: C: Error while installing RSeQC
... I am using ubuntu for installation of the software ...
written 1 day ago by Jessica_bioinfo • 10
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Comment: C: Error while installing RSeQC
... Thanks! I tried that before posting here. It did not work. Still, have the sam error. ...
written 1 day ago by Jessica_bioinfo • 10
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Error while installing RSeQC
... Hello, I am trying to install RSeQC in Linux machine from source. I am constantly getting following error: ImportError: No module named bx.bitset Can someone help me? Thanks in advance. ...
rnaseq qc rseqc written 1 day ago by Jessica_bioinfo • 10 • updated 1 day ago by WouterDeCoster ♦ 21k
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Comment: C: Post alignment QC of RNA-seq data
... Yes. I have used STAR aligner. It gave all the statistics in the log.final file. What is the next QC step I should perform? ...
written 1 day ago by Jessica_bioinfo • 10
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Comment: C: Error while aligning with OSA
... I am using the free version for students. Yes, I will contact them. ...
written 1 day ago by Jessica_bioinfo • 10
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Error while aligning with OSA
... Hello, I am aligning RNA-seq data to the human genome using OSA aligner. I am not using the already built reference provided by OSA. I built the reference using [this][1] script. And for mapping, I used [this][2] script. However. when I run the command I am getting following error: ---------- E ...
#aligner #osa #oshell written 2 days ago by Jessica_bioinfo • 10
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Comment: C: Post alignment QC of RNA-seq data
... Could you suggest a publication where such parameters are described? Or the QC of RNA-seq (pre and post analysis) is described ...
written 3 days ago by Jessica_bioinfo • 10
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Comment: C: Post alignment QC of RNA-seq data
... I am using STAR aligner ...
written 3 days ago by Jessica_bioinfo • 10
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Comment: C: Post alignment QC of RNA-seq data
... I read in the manual for FASTQC that it takes the SAM and BAM input. ...
written 3 days ago by Jessica_bioinfo • 10
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Post alignment QC of RNA-seq data
... Hello, I have aligned the RNA-seq data to the human genome and I used FASTQC for the pre-processing data. Can I use FASTQC for post alignment QC also? Or is there a better way of doing it? Thank you in advance. ...
qc fastqc written 3 days ago by Jessica_bioinfo • 10 • updated 3 days ago by Brian Bushnell ♦ 14k

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Rising Star 4 days ago, created 50 posts within first three months of joining.
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