User: KVC_bioinfo

gravatar for KVC_bioinfo
KVC_bioinfo200
Reputation:
200
Status:
Trusted
Location:
PA, USA
Last seen:
10 hours ago
Joined:
2 months, 3 weeks ago
Email:
k**@temple.edu

Posts by KVC_bioinfo

<prev • 153 results • page 1 of 16 • next >
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Answer: A: Minimap2 algorithm : seed-chain-align
... I found the answer. "With normal k-mer, the k-mer size is specified on the command line. It varies with presets." ...
written 5 days ago by KVC_bioinfo200
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Comment: C: Minimap2 algorithm : seed-chain-align
... Sure. Thank you. I will take care of next time. ...
written 5 days ago by KVC_bioinfo200
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Comment: C: Minimap2 algorithm : seed-chain-align
... Yes, In the interest of understanding it I have reached there. If this is not allowed I will close the question. Thank you. ...
written 5 days ago by KVC_bioinfo200
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Comment: C: Minimap2 warming message
... Thank you for putting the reference here. ...
written 5 days ago by KVC_bioinfo200
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Minimap2 algorithm : seed-chain-align
... Hello all, I am trying to understand the algorithm of [Minimap2][1]. Here, so far I understand follows a typical seed-chain-align procedure. However, I did not understand for seeding how the k-mers are selected and how long are they? Could someone help me understand it? [1]: https://arxiv.or ...
minimap2 aligner ont written 5 days ago by KVC_bioinfo200
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Comment: C: Looking for publicly available dataset.
... Thank you so much. I will look into it. ...
written 6 days ago by KVC_bioinfo200
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Comment: C: Looking for publicly available dataset.
... No. But I will definitely look into it. ...
written 6 days ago by KVC_bioinfo200
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Looking for publicly available dataset.
... Hello All, I am trying to find a gene expression dataset which is publicly available? I am looking for gene counts coming from HTSeq like tools for different genes. This is not specific to any genes. It can be from human/mouse. I want the dataset only to test few statistical tests. The purpose of ...
dataset public written 6 days ago by KVC_bioinfo200 • updated 5 days ago by mark.ziemann1000
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Comment: C: Selecting fastq sequences
... Have you looked into biopython? ...
written 6 days ago by KVC_bioinfo200
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Answer: A: Minimap2 warming message
... I have got help from the authors of minimap2. I downloaded the reference from [here][1] which is very confusing. when Replaced the reference [with this][2] Minimap2 works fine. [1]: http://%20ftp://ftp.ensembl.org/pub/release-77/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.toplevel.fa.gz ...
written 7 days ago by KVC_bioinfo200

Latest awards to KVC_bioinfo

Scholar 5 days ago, created an answer that has been accepted. For A: Minimap2 warming message
Commentator 6 days ago, created a comment with at least 3 up-votes. For C: Selecting fastq sequences
Appreciated 8 days ago, created a post with more than 5 votes. For Tutorials for Library Normalization in DESeq2 and EdgeR
Centurion 6 weeks ago, created 100 posts.
Supporter 8 weeks ago, voted at least 25 times.
Rising Star 9 weeks ago, created 50 posts within first three months of joining.

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