User: KVC_bioinfo

gravatar for KVC_bioinfo
KVC_bioinfo300
Reputation:
300
Status:
Trusted
Location:
WA, USA
Last seen:
5 hours ago
Joined:
6 months ago
Email:
k**************@gmail.com

Posts by KVC_bioinfo

<prev • 257 results • page 1 of 26 • next >
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Comment: C: Difficult using Nanoplot
... Thank you very much! ...
written 1 day ago by KVC_bioinfo300
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Comment: C: Difficult using Nanoplot
... Thanks! It just stopped after 2:30 hours and gave results. Worked very fine. Thanks. ...
written 1 day ago by KVC_bioinfo300
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Difficult using Nanoplot
... Hello all, I am using [NanoPlot][1] for generating the plot form ONT data. I am using the following command: NanoPlot --bam trim.sort.bam -o /path/out/ The input bam file is ~1GB [1]: https://gigabaseorgigabyte.wordpress.com/2017/06/01/example-gallery-of-nanoplot/ I have started running ...
nanoplot ont written 1 day ago by KVC_bioinfo300
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Comment: C: 1D^2: Oxford nanopre technology
... yes. I haven't seen ow the output from 2D looks like. Hence, I am confused. I have only seen how the output from 1D looks like. ...
written 3 days ago by KVC_bioinfo300
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Comment: C: 1D^2: Oxford nanopre technology
... Thanks! I will try there. ...
written 3 days ago by KVC_bioinfo300
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1D^2: Oxford nanopre technology
... Hello all, Recently, ONT introduced 1D^2 sequencing kit. I was wondering if someone has tried it. I want to know how different the fastq files look? Do we get 2 fastq files per sample (one per strand)? or it is one long file with improved accuracy? TIA ...
1d2 ont written 3 days ago by KVC_bioinfo300
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Comment: C: Saving plots in R
... Perfect. Thank you so much! ...
written 7 days ago by KVC_bioinfo300
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Saving plots in R
... Hello All, I am trying to save plot which I generated using ggplot in R. I saved with .jpeg, .pdf, .png formats. But none of them look good when I try to resize it for putting it on a presentation slide. Could someone suggest what is the best format to save those plots in order to look good on slid ...
R ggplot written 7 days ago by KVC_bioinfo300 • updated 7 days ago by jared.andrews07640
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Comment: C: Total counts(TC) normalization by R
... I want to perform it because i want to compare different normalization methods. ...
written 14 days ago by KVC_bioinfo300
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Total counts(TC) normalization by R
... Hello All., I am trying to find an R package or R script which can perform total count (TC) normalization in R? Could someone help me out here? ...
totalcount rna-seq normalization written 14 days ago by KVC_bioinfo300

Latest awards to KVC_bioinfo

Voter 3 months ago, voted more than 100 times.
Scholar 3 months ago, created an answer that has been accepted. For A: Minimap2 warming message
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Selecting fastq sequences
Appreciated 3 months ago, created a post with more than 5 votes. For Tutorials for Library Normalization in DESeq2 and EdgeR
Centurion 4 months ago, created 100 posts.
Supporter 5 months ago, voted at least 25 times.
Rising Star 5 months ago, created 50 posts within first three months of joining.

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