User: dago

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dago2.4k
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Posts by dago

<prev • 417 results • page 1 of 42 • next >
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Comment: C: error bar in bar plot ggplot2
... if you want to have a boxplot, are you aware that ggplot2 has a function called `geom_boxplot`? ...
written 2 days ago by dago2.4k
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Comment: C: Recommendations of Linux distros for beginners in bioinformatics
... Yes you are right, but practically speaking they both offer many bioinfo packages and programs, offering a solution biologist-friendly for informatic problem potentially time consuming and frustrating. ...
written 6 days ago by dago2.4k
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Comment: C: Recommendations of Linux distros for beginners in bioinformatics
... I think so, I am planning to update my system and try Bioconda. It looks really well planned and updated! ...
written 6 days ago by dago2.4k
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Answer: A: Recommendations of Linux distros for beginners in bioinformatics
... Hi personally think that the distro does not really matter. I would choose a well supported one which is mainly compatible with the majority of Bioinfo programs. I like the Devian-based one, like Ubuntu. Besides [Biolinux][1], I would strongly suggest you to take a look to [Bioconda][2]. In that t ...
written 6 days ago by dago2.4k
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Comment: C: Survey: Science and Communication
... Thanks to all of you taht participated. The survey will be up and running for some more days. We will share the results on Figshare on some similar platform. We hope to reach a significant number of participant. People working in #microbiology are particularly encouraged to participate. :) ...
written 10 days ago by dago2.4k
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Forum: Survey:Interested in how scientists communicate their work?This is how you can contribute!
... Dear all, I hope you all had a productive and successful year. I am involved in a small project to investigate the way scientists communicate their work and are engaged in social media. We have created a small survey, which you can find following the link below. https://goo.gl/forms/kK5NeluU6aXfIi ...
communication survey forum sequencing written 11 days ago by dago2.4k
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Comment: C: NCBI: dowload all genomes obtained from soil/marine/host associated bacteria/org
... I guess you answers are too inscrutable for me to understand! :) ...
written 4 months ago by dago2.4k
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Comment: C: NCBI: dowload all genomes obtained from soil/marine/host associated bacteria/org
... Hi Pierre, thanks very much for the answer. So I looked into it and that's how far I got. Starting from a biosample I can get the link to the assembly for example: esearch -db biosample -query "SAMN06971996" | elink -target assembly assembly NCID_1_14264864_130.14.22.215_9001_ ...
written 4 months ago by dago2.4k
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NCBI: dowload all genomes obtained from soil/marine/host associated bacteria/organisms
... Let's say I would like to download from NCBI all genomes obtained for marine bacterial (or soil or gut associated). I figured that [e-utilities][1] could work for me. Now, to get the information concerning the environmental source I should check the biosample. So I would do something like: ese ...
genome sequence database next-gen written 4 months ago by dago2.4k • updated 4 months ago by Charles Plessy2.3k
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Answer: A: GO enrichment analysis. Non-model organism.
... I think this problem has been discussed before here. Try to use the search function on the Biostarts home page. I found few posts already, see ![here][1] Good luck! [1]: https://ibb.co/kXaXcv ...
written 5 months ago by dago2.4k

Latest awards to dago

Commentator 1 day ago, created a comment with at least 3 up-votes. For C: Survey: Science and Communication
Popular Question 7 weeks ago, created a question with more than 1,000 views. For What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2015?
Great Question 4 months ago, created a question with more than 5,000 views. For COG assignment using COGNITOR (COGsoft)
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: scatter plot tool
Popular Question 5 months ago, created a question with more than 1,000 views. For What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2015?
Popular Question 5 months ago, created a question with more than 1,000 views. For Cluster proteins according to their domain architecture
Popular Question 5 months ago, created a question with more than 1,000 views. For Cluster proteins according to their domain architecture
Popular Question 6 months ago, created a question with more than 1,000 views. For Cluster proteins according to their domain architecture
Popular Question 6 months ago, created a question with more than 1,000 views. For Cluster proteins according to their domain architecture
Popular Question 7 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Scholar 7 months ago, created an answer that has been accepted. For A: GO enrichment analysis using non model organism
Popular Question 8 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Great Question 8 months ago, created a question with more than 5,000 views. For Available pipelines for functional annotaiton (COG, KEGG, GO) of genomes
Popular Question 8 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Popular Question 9 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Popular Question 9 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Student 10 months ago, asked a question with at least 3 up-votes. For Map gene gain and loss in phylogenetic tree
Popular Question 10 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Popular Question 11 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: scatter plot tool
Popular Question 12 months ago, created a question with more than 1,000 views. For Cluster proteins according to their domain architecture
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: scatter plot tool
Scholar 12 months ago, created an answer that has been accepted. For A: GO enrichment analysis using non model organism

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