User: dago
dago • 2.6k
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Posts by dago
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... I did not think about this. I guess I an getting used to have open source tools/db. Thanks ...
written 4 months ago by
dago • 2.6k
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... ah right, that is maybe why I could not find any tool doing that! ...
written 4 months ago by
dago • 2.6k
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... That is actually great! But I am not sure there are compounds here, just name of genes. No? ...
written 4 months ago by
dago • 2.6k
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... I saw this question has been asked here and there before.
However, I could not find a tool that does the job for me.
I want to download all pathways from KEGG including KO and compounds using R.
I would imagine creating an R object like:
$Path_1
...KO
...Compounds
$Path_2
...KO ...
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... Thank you @Amar, I appreciate your suggestions. I tried what you said as well 20.0, 20, 20.00. Always the same. I personally believe that there is an issue with Java. ...
written 12 months ago by
dago • 2.6k
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... Sorry, I did that as well, but I still get the same error. I edit my post now ...
written 12 months ago by
dago • 2.6k
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... I also posted this issue on the gatk github, sorry for the double posting ...
written 12 months ago by
dago • 2.6k
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... Thanks for your comment. I jsut tried and it gives me the same error. ...
written 12 months ago by
dago • 2.6k
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... Dear all I have problem with filtering the SNPs called with gatk v4.1.4.0.
I have a vcf file that looks like this:
contig00001 8227 . A G 40.68 . AC=1;AF=0.100;AN=10;BaseQRankSum=-0.861;ClippingRankSum=0.000;DP=88;FS=13.035;MLEAC=1;MLEAF=0.100;MQ=60.00;M ...
written 12 months ago by
dago • 2.6k
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... I think there are different approaches to asses the alignments:
[A statistical score for assessing the quality of multiple sequence alignments][1]
[Automatic assessment of alignment quality][2]
However, I personally never really dug too much into it. For two main reasons:
1. I am often familiar ...
written 13 months ago by
dago • 2.6k
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