User: dago
dago • 2.3k
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Posts by dago
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... I guess you answers are too inscrutable for me to understand! :) ...
written 10 weeks ago by
dago • 2.3k
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... Hi Pierre, thanks very much for the answer. So I looked into it and that's how far I got.
Starting from a biosample I can get the link to the assembly for example:
esearch -db biosample -query "SAMN06971996" | elink -target assembly
assembly
NCID_1_14264864_130.14.22.215_9001_ ...
written 11 weeks ago by
dago • 2.3k
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... Let's say I would like to download from NCBI all genomes obtained for marine bacterial (or soil or gut associated).
I figured that [e-utilities][1] could work for me.
Now, to get the information concerning the environmental source I should check the biosample.
So I would do something like:
ese ...
written 11 weeks ago by
dago • 2.3k
• updated
10 weeks ago by
Charles Plessy • 2.2k
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... I think this problem has been discussed before here. Try to use the search function on the Biostarts home page. I found few posts already, see ![here][1]
Good luck!
[1]: https://ibb.co/kXaXcv ...
written 3 months ago by
dago • 2.3k
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... oups. Now it should work. ...
written 3 months ago by
dago • 2.3k
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... I have been using [RSAT][1]. It contains quite some different tools, and you can work with Chip-seq as well.
[1]: http://www.rsat.eu/ ...
written 3 months ago by
dago • 2.3k
1
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... On this platform there are many curators of the courses provided by [Physalia][1]. Give it a look.
[1]: https://www.physalia-courses.org/ ...
written 3 months ago by
dago • 2.3k
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... I am sorry, but I cannot really understand. You have an organism (bacterium, yest, human) you take samples and extract the mRNA. Unless there are some contaminations the:
> genome is made up of part of other genomes
doesn't make sense. If you do not have only one organism but a mix (e.g. a mi ...
written 3 months ago by
dago • 2.3k
1
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260
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... What does it mean
> "organism which is combination of other organisms"
Are you talking about metatranscriptome? ...
written 3 months ago by
dago • 2.3k
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... Hi, thanks for the comments. I think that every person has a different way of learning, so there could be some resources I really like, but you will find them nasty. Thus I do not really think that a ranking would be appropriate, at least not a ranking based on the judgement of one person. Maybe, wh ...
written 3 months ago by
dago • 2.3k
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