User: dago

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dago2.3k
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Posts by dago

<prev • 411 results • page 1 of 42 • next >
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Comment: C: NCBI: dowload all genomes obtained from soil/marine/host associated bacteria/org
... I guess you answers are too inscrutable for me to understand! :) ...
written 17 days ago by dago2.3k
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Comment: C: NCBI: dowload all genomes obtained from soil/marine/host associated bacteria/org
... Hi Pierre, thanks very much for the answer. So I looked into it and that's how far I got. Starting from a biosample I can get the link to the assembly for example: esearch -db biosample -query "SAMN06971996" | elink -target assembly assembly NCID_1_14264864_130.14.22.215_9001_ ...
written 26 days ago by dago2.3k
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NCBI: dowload all genomes obtained from soil/marine/host associated bacteria/organisms
... Let's say I would like to download from NCBI all genomes obtained for marine bacterial (or soil or gut associated). I figured that [e-utilities][1] could work for me. Now, to get the information concerning the environmental source I should check the biosample. So I would do something like: ese ...
genome sequence database next-gen written 26 days ago by dago2.3k • updated 16 days ago by Charles Plessy2.1k
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Answer: A: GO enrichment analysis. Non-model organism.
... I think this problem has been discussed before here. Try to use the search function on the Biostarts home page. I found few posts already, see ![here][1] Good luck! [1]: https://ibb.co/kXaXcv ...
written 6 weeks ago by dago2.3k
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Comment: C: Transcription factor enrichment analysis
... oups. Now it should work. ...
written 6 weeks ago by dago2.3k
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Answer: A: Transcription factor enrichment analysis
... I have been using [RSAT][1]. It contains quite some different tools, and you can work with Chip-seq as well. [1]: http://www.rsat.eu/ ...
written 6 weeks ago by dago2.3k
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Answer: A: Bionformatics training courses and workshops in Europa?
... On this platform there are many curators of the courses provided by [Physalia][1]. Give it a look. [1]: https://www.physalia-courses.org/ ...
written 6 weeks ago by dago2.3k
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Comment: C: Recognizing an organism which is combination of other organisms
... I am sorry, but I cannot really understand. You have an organism (bacterium, yest, human) you take samples and extract the mRNA. Unless there are some contaminations the: > genome is made up of part of other genomes doesn't make sense. If you do not have only one organism but a mix (e.g. a mi ...
written 6 weeks ago by dago2.3k
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Comment: C: Recognizing an organism which is combination of other organisms
... What does it mean > "organism which is combination of other organisms" Are you talking about metatranscriptome? ...
written 6 weeks ago by dago2.3k
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Comment: C: Learning Python: list of resources
... Hi, thanks for the comments. I think that every person has a different way of learning, so there could be some resources I really like, but you will find them nasty. Thus I do not really think that a ranking would be appropriate, at least not a ranking based on the judgement of one person. Maybe, wh ...
written 7 weeks ago by dago2.3k

Latest awards to dago

Great Question 12 days ago, created a question with more than 5,000 views. For COG assignment using COGNITOR (COGsoft)
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: scatter plot tool
Popular Question 7 weeks ago, created a question with more than 1,000 views. For What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2015?
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Cluster proteins according to their domain architecture
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Cluster proteins according to their domain architecture
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Cluster proteins according to their domain architecture
Popular Question 3 months ago, created a question with more than 1,000 views. For Cluster proteins according to their domain architecture
Popular Question 3 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Scholar 3 months ago, created an answer that has been accepted. For A: GO enrichment analysis using non model organism
Popular Question 4 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Great Question 4 months ago, created a question with more than 5,000 views. For Available pipelines for functional annotaiton (COG, KEGG, GO) of genomes
Popular Question 4 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Popular Question 5 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Popular Question 5 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Student 6 months ago, asked a question with at least 3 up-votes. For Map gene gain and loss in phylogenetic tree
Popular Question 7 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Popular Question 7 months ago, created a question with more than 1,000 views. For Map gene gain and loss in phylogenetic tree
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: scatter plot tool
Popular Question 8 months ago, created a question with more than 1,000 views. For Cluster proteins according to their domain architecture
Scholar 8 months ago, created an answer that has been accepted. For A: GO enrichment analysis using non model organism
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: scatter plot tool
Popular Question 8 months ago, created a question with more than 1,000 views. For Cluster proteins according to their domain architecture
Scholar 9 months ago, created an answer that has been accepted. For A: GO enrichment analysis using non model organism

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