User: Radhouane Aniba

gravatar for Radhouane Aniba
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750
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http://biocodershub.net
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5 years, 9 months ago
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8 years, 1 month ago
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1***@biostars.org

Posts by Radhouane Aniba

<prev • 111 results • page 1 of 12 • next >
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Comment: C: Gwas Traits Relationship
... Peixe, in case you will be interested to it, I think this tool is solving my problem since I am only interested in GWAS hits/traits, it is simply Hugenavigator (http://www.ncbi.nlm.nih.gov/pubmed/21610748) ...
written 6.0 years ago by Radhouane Aniba750 • updated 6.0 years ago by Istvan Albert ♦♦ 79k
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Answer: A: Gwas Traits Relationship
... Thank you Peixe, it helps certainly to have a general view on a Trait, I will keep looking for other ways of doing this and update this thread. Thanks Rad ...
written 6.0 years ago by Radhouane Aniba750
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Gwas Traits Relationship
... Hello, I was trying to find a clever and intelligent way to find a relationship between GWAS traits (related diseases), I found some useful resources but they are not really interactive, it is more for listing relationships (general) and ontologies, like Diseasome website for example. Is there a w ...
gwas ontology written 6.0 years ago by Radhouane Aniba750
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Gene Networks Intersection
... Hi, I am working on comparing two gene lists, I want to know if there is a fast way of representing these networks as Graphs (simple ones, may be like some cytoscape plugin are doing already, the ideal is a KEGG-like network), and highlighting common nodes between these graphs ? Any idea on an exi ...
written 6.1 years ago by Radhouane Aniba750 • updated 6.1 years ago by Rad800
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Answer: A: Multiple Computational Biology Faculty Positions At The University Of Maryland,
... I think the first link is wrong :) ...
written 6.1 years ago by Radhouane Aniba750
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Comment: C: Pairwise Snp Ld Scoring
... I have just a SNPlist, for CEU population where do I get genotypes and how to format this my data file they have in the example, how to format a per file ? what it contains ? ...
written 7.0 years ago by Radhouane Aniba750
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Comment: C: Is Plink Dead ?
... I don't know, even this example doesn't work plink --lookup rs1475515 ...
written 7.0 years ago by Radhouane Aniba750
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(Closed) Is Plink Dead ?
... Well the question is clear, despite a very rich documentation, looks for me like plink is dead, none of their example is working (especially annotation) and the links to sullivan's lab is dead as well ?! Anyone getting plink working ? Am I wrong ? Rad ...
plink written 7.0 years ago by Radhouane Aniba750 • updated 7.0 years ago by David Quigley11k
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Comment: C: Pairwise Snp Ld Scoring
... Well I tried SNP which is good because it allows to extend a SNP list, I am interested in CEU population, but the problem is that I want to use the same features but not for a predefined tagSNPs, I have my own list. ...
written 7.0 years ago by Radhouane Aniba750
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Pairwise Snp Ld Scoring
... Hello everyone, I have two lists of SNPs, List A and List B, I want to calculate r2 of each SNP in A with each SNP in B in a pairwise manner. None of the tools I know allow that, I can play with awk to create a single file with all pairwise pairs but then I am wondering which tool could be the bes ...
R snp written 7.0 years ago by Radhouane Aniba750 • updated 4.8 years ago by Biostar ♦♦ 20

Latest awards to Radhouane Aniba

Supporter 5.8 years ago, voted at least 25 times.
Centurion 5.8 years ago, created 100 posts.
Popular Question 7.1 years ago, created a question with more than 1,000 views. For Wig, Bigwig And Bedgraph, Any In Depth Description ?
Teacher 7.4 years ago, created an answer with at least 3 up-votes. For A: Which Chip Seq Peak Callers Do You Use?
Good Question 7.6 years ago, asked a question that was upvoted at least 5 times. For Are Bioconductor Packages Designed For Enrichment Analysis Affected By Kegg Privatization ?
Popular Question 7.6 years ago, created a question with more than 1,000 views. For Ucsc Tables : What Is The Difference Between Refgene And Xenorefgene Tables ?
Student 7.7 years ago, asked a question with at least 3 up-votes. For How To Measure Gene Enrichement (Go, Kegg) Using R And Ensembl Ids ?
Appreciated 7.7 years ago, created a post with more than 5 votes. For How To Measure Gene Enrichement (Go, Kegg) Using R And Ensembl Ids ?
Good Question 7.7 years ago, asked a question that was upvoted at least 5 times. For How To Measure Gene Enrichement (Go, Kegg) Using R And Ensembl Ids ?
Popular Question 7.7 years ago, created a question with more than 1,000 views. For How To Measure Gene Enrichement (Go, Kegg) Using R And Ensembl Ids ?
Student 7.7 years ago, asked a question with at least 3 up-votes. For Text Mining Tool For Gwas Papers
Student 7.7 years ago, asked a question with at least 3 up-votes. For Precalculated Ld Blocks

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