Moderator: Rm

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Rm7.6k
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Bioinformatics Staff Scientist

Weis Center for Research | Geisinger Health System

Posts by Rm

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Comment: C: GTEx: Genotypes specifc differential gene expression plot for an RSID?
... Thanks, thats the link i was missing...need to apply for access. ...
written 15 months ago by Rm7.6k
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Comment: C: GTEx: Genotypes specifc differential gene expression plot for an RSID?
... I could not find the Genotype information links to expression ; can you direct me to those files in GTEx ...
written 15 months ago by Rm7.6k
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GTEx: Genotypes specifc differential gene expression plot for an RSID?
... Manually through GTEx Portal we can access this for QTLs. Is there a way to get it locally or through any api or R ? For example: rs1998081, rs2567617, and rs2144940 genotypes are associated with differential THBD gene expression in whole blood. [Figure 2][1] ![enter image description here] ...
R api gtex written 15 months ago by Rm7.6k • updated 15 months ago by WouterDeCoster23k
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Comment: C: Reproduction GTex Box plot
... @Giovanni M Dall'Olio How to generate genotype specific plots for an RSID Say rs1998081 or rs 2567619 as done in this ![enter image description here][1] [1]: http://d3md5dngttnvbj.cloudfront.net/content/bloodjournal/127/15/1923/F2.large.jpg?width=800&height=600&carousel=1 ...
written 15 months ago by Rm7.6k
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Comment: C: Significance of PLINK epistasis p-values
... try [LAMP][1] algorithm or [lamplink][2] tool directly; [1]: http://a-terada.github.io/lamp/ [2]: http://a-terada.github.io/lamplink/ ...
written 17 months ago by Rm7.6k
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Comment: C: Transcript support level in Gencode gtf v19
... Hi Emily/Denise: Does TSL information included in GTFs yet?  I tried GRCH37.82 GTFs could not find them ...
written 21 months ago by Rm7.6k
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Job: Postdoctoral Fellow (Genetics & Bioinformatics) (#24714) @ Geisinger Health System -- Danville, PA (US)
... BACKGROUND: Postdoctoral Fellow Cluster Hire We are seeking highly motivated individuals with a background in Human Genetics, Genetic Epidemiology, Statistical Genetics, Population Genetics, and/or Bioinformatics for postdoctoral positions at Geisinger Health System in the Department of Biomedical ...
ngs next-gen jobs germline written 23 months ago by Rm7.6k
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Answer: A: Download link to ensembl human GRCH37 transcript support level (TSL) flags infor
... Finally found one for hg19 from gencode V19:  http://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/wgEncodeGencodeTranscriptionSupportLevelV19.txt.gz ...
written 23 months ago by Rm7.6k
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Download link to ensembl human GRCH37 transcript support level (TSL) flags information?
... Where to find the Human GRCH37 transcript support level flags information for bulk download from ensembl For human GRCH38 we can find them here    ...
ensembl tsl written 23 months ago by Rm7.6k
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Comment: C: Filtering transcripts by transcript support level (TSL)
... Filtering out TSL4 or 5 seems reasonable   ...
written 23 months ago by Rm7.6k

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