Moderator: Rm

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Rm7.7k
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Bioinformatics Staff Scientist

Weis Center for Research | Geisinger Health System

Posts by Rm

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Comment: C: Is there an API for querying the Exac database?
... looks like [http://exac.hms.harvard.edu/][1] is down for quite some time [1]: http://exac.hms.harvard.edu/ ...
written 5 weeks ago by Rm7.7k
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Comment: A: Has someone any experience with hmmvar and hmmvar-func?
... write to authors about it or here https://github.com/mmcat/hmmvar-func/issues ...
written 8 months ago by Rm7.7k
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Comment: C: GTEx: Genotypes specifc differential gene expression plot for an RSID?
... Thanks, thats the link i was missing...need to apply for access. ...
written 23 months ago by Rm7.7k
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Comment: C: GTEx: Genotypes specifc differential gene expression plot for an RSID?
... I could not find the Genotype information links to expression ; can you direct me to those files in GTEx ...
written 23 months ago by Rm7.7k
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GTEx: Genotypes specifc differential gene expression plot for an RSID?
... Manually through GTEx Portal we can access this for QTLs. Is there a way to get it locally or through any api or R ? For example: rs1998081, rs2567617, and rs2144940 genotypes are associated with differential THBD gene expression in whole blood. [Figure 2][1] ![enter image description here] ...
R api gtex written 23 months ago by Rm7.7k • updated 23 months ago by WouterDeCoster30k
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Comment: C: Reproduction GTex Box plot
... @Giovanni M Dall'Olio How to generate genotype specific plots for an RSID Say rs1998081 or rs 2567619 as done in this ![enter image description here][1] [1]: http://d3md5dngttnvbj.cloudfront.net/content/bloodjournal/127/15/1923/F2.large.jpg?width=800&height=600&carousel=1 ...
written 23 months ago by Rm7.7k
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Comment: C: Significance of PLINK epistasis p-values
... try [LAMP][1] algorithm or [lamplink][2] tool directly; [1]: http://a-terada.github.io/lamp/ [2]: http://a-terada.github.io/lamplink/ ...
written 2.1 years ago by Rm7.7k
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Comment: C: Transcript support level in Gencode gtf v19
... Hi Emily/Denise: Does TSL information included in GTFs yet?  I tried GRCH37.82 GTFs could not find them ...
written 2.4 years ago by Rm7.7k
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Job: Postdoctoral Fellow (Genetics & Bioinformatics) (#24714) @ Geisinger Health System -- Danville, PA (US)
... BACKGROUND: Postdoctoral Fellow Cluster Hire We are seeking highly motivated individuals with a background in Human Genetics, Genetic Epidemiology, Statistical Genetics, Population Genetics, and/or Bioinformatics for postdoctoral positions at Geisinger Health System in the Department of Biomedical ...
ngs next-gen jobs germline written 2.6 years ago by Rm7.7k
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Answer: A: Download link to ensembl human GRCH37 transcript support level (TSL) flags infor
... Finally found one for hg19 from gencode V19:  http://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/wgEncodeGencodeTranscriptionSupportLevelV19.txt.gz ...
written 2.6 years ago by Rm7.7k

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Great Question 5 months ago, created a question with more than 5,000 views. For How To Export Normalized Counts From Edger
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