User: Woa
Woa • 2.8k
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Posts by Woa
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... Can you manage with python? If so, this one looks good and I guess its actively developed:
https://mobiusklein.github.io/ms_deisotope/docs/_build/html/ ...
written 6 months ago by
Woa • 2.8k
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... I second Mensur. You may look for some denovo ligand design software which can build peptides for you.However I would first try tools from Baker lab as suggested.
If you're interested , one such old example is "Emplics", but may be of little or no value now.
https://www.ncbi.nlm.nih.gov/pubmed ...
written 7 months ago by
Woa • 2.8k
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... Also,
https://en.wikipedia.org/wiki/Protein_pKa_calculations#Using_the_Poisson%E2%80%93Boltzmann_equation ...
written 9 months ago by
Woa • 2.8k
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... This article might give you something to start with:
https://www.pnas.org/content/98/22/12473
The first author of the article seems to be active in this research group and possibly can help
http://www.northeastern.edu/org/ ...
written 9 months ago by
Woa • 2.8k
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... **MFUZZ**
[MFUZZ: Soft clustering of time series gene expression data][1]
[1]: https://bioconductor.org/packages/release/bioc/html/Mfuzz.html ...
written 14 months ago by
Woa • 2.8k
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Answer:
A: Functional enrichment tool
... http://amp.pharm.mssm.edu/Enrichr/
...
written 4.1 years ago by
Woa • 2.8k
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Answer:
A: PCA plot Fig software
... Not a 3D plot, however there are lot good pics/plots of PCA results and accompanying R code/Data from the supplement of this paper:
[**Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes**](http://www.nature.com/ncomms/2015/150109/ncomms6901/fu ...
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... This is a good review:
"Methods and approaches in the topology-based analysis of biological pathways"
http://journal.frontiersin.org/article/10.3389/fphys.2013.00278/abstract
...
written 5.0 years ago by
Woa • 2.8k
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... http://www.advaitabio.com/ipathwayguide.html#page=page-1
...
written 5.0 years ago by
Woa • 2.8k
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