User: Woa

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Woa2.7k
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Posts by Woa

<prev • 281 results • page 1 of 29 • next >
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Answer: A: Functional enrichment tool
... http://amp.pharm.mssm.edu/Enrichr/ ...
written 2.3 years ago by Woa2.7k
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Answer: A: PCA plot Fig software
... Not a 3D plot, however there are lot good pics/plots  of PCA results and accompanying R code/Data from the supplement of this paper:   "Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes" http://www.nature.com/ncomms/2015/150109/ncomms6901/fu ...
written 3.1 years ago by Woa2.7k
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Answer: A: The quest for the perfect gene-set analysis software
... This is a good review: "Methods and approaches in the topology-based analysis of biological pathways" http://journal.frontiersin.org/article/10.3389/fphys.2013.00278/abstract ...
written 3.2 years ago by Woa2.7k
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Answer: A: The quest for the perfect gene-set analysis software
... http://www.advaitabio.com/ipathwayguide.html#page=page-1 ...
written 3.2 years ago by Woa2.7k
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Comment: C: Lior Pachter's Blog
... I guess you're right ...
written 3.3 years ago by Woa2.7k
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Blog: Lior Pachter's Blog
... I wonder why I didn't come across Lior Pachter's Blog earlier https://liorpachter.wordpress.com/ There was a big war going on with two network biology papers: https://liorpachter.wordpress.com/2014/02/10/the-network-nonsense-of-albert-laszlo-barabasi/ https://liorpachter.wordpress.com/2014/02/11 ...
blog written 3.3 years ago by Woa2.7k
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Comment: C: How to get protein expression data from MaxQuant
... Check the original paper. I think its iBAQ intensity they used because its  Absolute Quantification unlike LFQ(label free quantification) , which is relative quantification.  ...
written 3.5 years ago by Woa2.7k
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Answer: A: How to get protein expression data from MaxQuant
... Check the files containing  iBAQ intensity data in it, the iBAQ intensity is the measure for  Protein abundance or expression ...
written 3.5 years ago by Woa2.7k
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Comment: C: Center of mass of a Protein
... The x,y,z co-ords of the Center  of mass can be found out using the x,y,z co-ords of all the heavy atoms of the protein using that equation. That equation provides the CM as a position vector. Use this formula to invidually calculate the X,Y,Z co-ord of the CM: http://formulas.tutorvista.com/physics ...
written 3.5 years ago by Woa2.7k
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Answer: A: Center of mass of a Protein
... For finding the CM taking uniform mass for each heavy atom ( non hydrogen atom) is OK. Which equation you're talking about?  ...
written 3.5 years ago by Woa2.7k

Latest awards to Woa

Great Question 5 months ago, created a question with more than 5,000 views. For Refseq Mrna To Cds Sequence
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Popular Question 8 months ago, created a question with more than 1,000 views. For Lior Pachter's Blog
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Teacher 9 months ago, created an answer with at least 3 up-votes. For A: State Of Biostar - Future Directions (January 2013)
Popular Question 11 months ago, created a question with more than 1,000 views. For Gene Ontology Like Term Clustering
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Great Question 15 months ago, created a question with more than 5,000 views. For How To Calculate Fold Change And Its Significance In Quantitative Proteomics
Student 16 months ago, asked a question with at least 3 up-votes. For How Many Human Pathways Exist In Kegg Database?
Popular Question 18 months ago, created a question with more than 1,000 views. For Go Terms Redundancy Remover
Great Question 20 months ago, created a question with more than 5,000 views. For Program For Finding Orf And Corresponding Reading Frame
Great Question 23 months ago, created a question with more than 5,000 views. For Genbank,Ncbi Refseq Or Uniprot Protein Sequences
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Popular Question 2.2 years ago, created a question with more than 1,000 views. For Genbank,Ncbi Refseq Or Uniprot Protein Sequences
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Popular Question 2.2 years ago, created a question with more than 1,000 views. For Gene Ontology: Shortest Path From Root To Node
Scholar 2.2 years ago, created an answer that has been accepted. For A: GO Term Enrichment Tutorial/Guide?
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Genbank,Ncbi Refseq Or Uniprot Protein Sequences
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: State Of Biostar - Future Directions (January 2013)

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