User: Woa
Woa • 2.7k
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Posts by Woa
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... **MFUZZ**
[MFUZZ: Soft clustering of time series gene expression data][1]
[1]: https://bioconductor.org/packages/release/bioc/html/Mfuzz.html ...
written 6 weeks ago by
Woa • 2.7k
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Answer:
A: Functional enrichment tool
... http://amp.pharm.mssm.edu/Enrichr/
...
written 3.0 years ago by
Woa • 2.7k
0
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6
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6
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Answer:
A: PCA plot Fig software
... Not a 3D plot, however there are lot good pics/plots of PCA results and accompanying R code/Data from the supplement of this paper:
"Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes"
http://www.nature.com/ncomms/2015/150109/ncomms6901/fu ...
written 3.8 years ago by
Woa • 2.7k
2
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6
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... This is a good review:
"Methods and approaches in the topology-based analysis of biological pathways"
http://journal.frontiersin.org/article/10.3389/fphys.2013.00278/abstract
...
written 4.0 years ago by
Woa • 2.7k
2
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6
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6
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... http://www.advaitabio.com/ipathwayguide.html#page=page-1
...
written 4.0 years ago by
Woa • 2.7k
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Blog:
Lior Pachter's Blog
... I wonder why I didn't come across Lior Pachter's Blog earlier
https://liorpachter.wordpress.com/
There was a big war going on with two network biology papers:
https://liorpachter.wordpress.com/2014/02/10/the-network-nonsense-of-albert-laszlo-barabasi/
https://liorpachter.wordpress.com/2014/02/11 ...
written 4.0 years ago by
Woa • 2.7k
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1
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... Check the original paper. I think its iBAQ intensity they used because its Absolute Quantification unlike LFQ(label free quantification) , which is relative quantification.
...
written 4.2 years ago by
Woa • 2.7k
1
vote
1
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3.4k
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... Check the files containing iBAQ intensity data in it, the iBAQ intensity is the measure for Protein abundance or expression
...
written 4.2 years ago by
Woa • 2.7k
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2.9k
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Comment:
C: Center of mass of a Protein
... The x,y,z co-ords of the Center of mass can be found out using the x,y,z co-ords of all the heavy atoms of the protein using that equation. That equation provides the CM as a position vector. Use this formula to invidually calculate the X,Y,Z co-ord of the CM:
http://formulas.tutorvista.com/physics ...
written 4.2 years ago by
Woa • 2.7k
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