User: Woa

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Woa2.8k
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Posts by Woa

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Answer: A: monoisotopic mass determination and charge state assignment of a full MS1 spectr
... Can you manage with python? If so, this one looks good and I guess its actively developed: https://mobiusklein.github.io/ms_deisotope/docs/_build/html/ ...
written 13 months ago by Woa2.8k
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Answer: A: Question: Is there any software for finding or generating a small peptide ligand
... I second Mensur. You may look for some denovo ligand design software which can build peptides for you.However I would first try tools from Baker lab as suggested. If you're interested , one such old example is "Emplics", but may be of little or no value now. https://www.ncbi.nlm.nih.gov/pubmed ...
written 14 months ago by Woa2.8k
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Comment: C: Calculating pI from structural information rather than sequences
... Also, https://en.wikipedia.org/wiki/Protein_pKa_calculations#Using_the_Poisson%E2%80%93Boltzmann_equation ...
written 16 months ago by Woa2.8k
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Answer: A: Calculating pI from structural information rather than sequences
... This article might give you something to start with: https://www.pnas.org/content/98/22/12473 The first author of the article seems to be active in this research group and possibly can help http://www.northeastern.edu/org/ ...
written 16 months ago by Woa2.8k
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Answer: A: Gene expression profile analysis
... **MFUZZ** [MFUZZ: Soft clustering of time series gene expression data][1] [1]: https://bioconductor.org/packages/release/bioc/html/Mfuzz.html ...
written 21 months ago by Woa2.8k
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Answer: A: Functional enrichment tool
... http://amp.pharm.mssm.edu/Enrichr/ ...
written 4.6 years ago by Woa2.8k
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Answer: A: PCA plot Fig software
... Not a 3D plot, however there are lot good pics/plots of PCA results and accompanying R code/Data from the supplement of this paper: [**Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes**](http://www.nature.com/ncomms/2015/150109/ncomms6901/fu ...
written 5.4 years ago by Woa2.8k • updated 14 months ago by _r_am32k
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Answer: A: The quest for the perfect gene-set analysis software
... This is a good review: "Methods and approaches in the topology-based analysis of biological pathways" http://journal.frontiersin.org/article/10.3389/fphys.2013.00278/abstract ...
written 5.6 years ago by Woa2.8k
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Answer: A: The quest for the perfect gene-set analysis software
... http://www.advaitabio.com/ipathwayguide.html#page=page-1 ...
written 5.6 years ago by Woa2.8k
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Comment: C: Lior Pachter's Blog
... I guess you're right ...
written 5.6 years ago by Woa2.8k

Latest awards to Woa

Appreciated 4 months ago, created a post with more than 5 votes. For A: Translation Of Est Sequences To Protein
Epic Question 4 months ago, created a question with more than 10,000 views. For Genbank,Ncbi Refseq Or Uniprot Protein Sequences
Great Question 10 months ago, created a question with more than 5,000 views. For Genbank,Ncbi Refseq Or Uniprot Protein Sequences
Popular Question 10 months ago, created a question with more than 1,000 views. For Refseq Error: Insufficient Same-Species Transcript Support
Great Question 10 months ago, created a question with more than 5,000 views. For Go Terms Redundancy Remover
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: State Of Biostar - Future Directions (January 2013)
Popular Question 14 months ago, created a question with more than 1,000 views. For Finding The Source Article For Springer Images
Great Question 16 months ago, created a question with more than 5,000 views. For Go Terms Redundancy Remover
Great Question 16 months ago, created a question with more than 5,000 views. For How Many Human Pathways Exist In Kegg Database?
Appreciated 16 months ago, created a post with more than 5 votes. For A: Translation Of Est Sequences To Protein
Popular Question 18 months ago, created a question with more than 1,000 views. For Lior Pachter's Blog
Great Question 20 months ago, created a question with more than 5,000 views. For Refseq Mrna To Cds Sequence
Popular Question 20 months ago, created a question with more than 1,000 views. For Lior Pachter's Blog
Great Question 23 months ago, created a question with more than 5,000 views. For Genbank,Ncbi Refseq Or Uniprot Protein Sequences
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Lior Pachter's Blog
Great Question 2.5 years ago, created a question with more than 5,000 views. For How To Calculate Fold Change And Its Significance In Quantitative Proteomics
Appreciated 2.8 years ago, created a post with more than 5 votes. For A: Translation Of Est Sequences To Protein
Great Question 2.8 years ago, created a question with more than 5,000 views. For How To Calculate Fold Change And Its Significance In Quantitative Proteomics
Great Question 2.8 years ago, created a question with more than 5,000 views. For Refseq Mrna To Cds Sequence
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Problem Fetching Genomic Sequence From Ddbj
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Lior Pachter's Blog
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: State Of Biostar - Future Directions (January 2013)
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Go Terms Redundancy Remover
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Gene Ontology Like Term Clustering
Popular Question 3.4 years ago, created a question with more than 1,000 views. For How To Calculate Fold Change And Its Significance In Quantitative Proteomics

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