User: Woa

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Woa2.6k
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Posts by Woa

<prev • 281 results • page 1 of 29 • next >
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Answer: A: Functional enrichment tool
... http://amp.pharm.mssm.edu/Enrichr/ ...
written 17 months ago by Woa2.6k
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Answer: A: PCA plot Fig software
... Not a 3D plot, however there are lot good pics/plots  of PCA results and accompanying R code/Data from the supplement of this paper:   "Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes" http://www.nature.com/ncomms/2015/150109/ncomms6901/fu ...
written 2.2 years ago by Woa2.6k
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Answer: A: The quest for the perfect gene-set analysis software
... This is a good review: "Methods and approaches in the topology-based analysis of biological pathways" http://journal.frontiersin.org/article/10.3389/fphys.2013.00278/abstract ...
written 2.4 years ago by Woa2.6k
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Answer: A: The quest for the perfect gene-set analysis software
... http://www.advaitabio.com/ipathwayguide.html#page=page-1 ...
written 2.4 years ago by Woa2.6k
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Comment: C: Lior Pachter's Blog
... I guess you're right ...
written 2.4 years ago by Woa2.6k
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Blog: Lior Pachter's Blog
... I wonder why I didn't come across Lior Pachter's Blog earlier https://liorpachter.wordpress.com/ There was a big war going on with two network biology papers: https://liorpachter.wordpress.com/2014/02/10/the-network-nonsense-of-albert-laszlo-barabasi/ https://liorpachter.wordpress.com/2014/02/11 ...
blog written 2.4 years ago by Woa2.6k
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Comment: C: How to get protein expression data from MaxQuant
... Check the original paper. I think its iBAQ intensity they used because its  Absolute Quantification unlike LFQ(label free quantification) , which is relative quantification.  ...
written 2.6 years ago by Woa2.6k
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Answer: A: How to get protein expression data from MaxQuant
... Check the files containing  iBAQ intensity data in it, the iBAQ intensity is the measure for  Protein abundance or expression ...
written 2.6 years ago by Woa2.6k
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Comment: C: Center of mass of a Protein
... The x,y,z co-ords of the Center  of mass can be found out using the x,y,z co-ords of all the heavy atoms of the protein using that equation. That equation provides the CM as a position vector. Use this formula to invidually calculate the X,Y,Z co-ord of the CM: http://formulas.tutorvista.com/physics ...
written 2.7 years ago by Woa2.6k
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Answer: A: Center of mass of a Protein
... For finding the CM taking uniform mass for each heavy atom ( non hydrogen atom) is OK. Which equation you're talking about?  ...
written 2.7 years ago by Woa2.6k

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Appreciated 13 months ago, created a post with more than 5 votes. For A: Best Graphics Gallery Or Blogs For Bioinformatics Use
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