Moderator: Giovanni M Dall'Olio

Reputation:
24,440
Status:
Trusted
Location:
London, UK
Website:
http://bioinfoblog.it/
Twitter:
dalloliogm
Scholar ID:
Google Scholar Page
Last seen:
12 hours ago
Joined:
7 years, 1 month ago
Email:
d*********@gmail.com

Research Associate at the King's College of London. Interested in human population genetics and cancer.

Posts by Giovanni M Dall'Olio

<prev • 1,357 results • page 1 of 136 • next >
0
votes
5
answers
231
views
5
answers
Comment: C: Research advice needed
... Where are you based? Is there any local community of bioinformaticians that could help you? ...
written 10 days ago by Giovanni M Dall'Olio24k
0
votes
5
answers
196
views
5
answers
Answer: A: retriving barcodes from TCGA using r
... There is a bioconductor package called [tcgaBiolinks][1]. I've never used but it should have the function you are looking for. [1]: https://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/tcgaBiolinks.html ...
written 24 days ago by Giovanni M Dall'Olio24k
0
votes
0
answers
294
views
0
answers
Comment: C: Genomics tutor needed
... https://www.meetup.com/Bioinformatics-London ...
written 24 days ago by Giovanni M Dall'Olio24k
0
votes
0
answers
294
views
0
answers
Comment: C: Genomics tutor needed
... I would argue that BigQuery and HDFS are good file systems for genomics data, but unfortunately few NGS analysis tools support them, so there is currently not much advantage from using them. ...
written 25 days ago by Giovanni M Dall'Olio24k
0
votes
0
answers
294
views
0
answers
Comment: C: Genomics tutor needed
... There is a bioinformatics meetup group in London, next meeting is this Thursday (but I won't be able to come this time) ...
written 25 days ago by Giovanni M Dall'Olio24k
2
votes
4
answers
257
views
4
answers
Answer: A: Infer publication date by Pubmed ID
... Thanks everybody. Just for reference, I've decided to download the whole medline and parse the file locally, as I wanted to avoid making hundreds of thousands query updated. First, I've downloaded the files from ftp://ftp.ncbi.nlm.nih.gov/pubmed/baseline Since these are xml files, I've extracted ...
written 25 days ago by Giovanni M Dall'Olio24k
0
votes
4
answers
257
views
4
answers
Comment: C: Infer publication date by Pubmed ID
... I see! That's too bad, it means I really need to get a table then. ...
written 9 weeks ago by Giovanni M Dall'Olio24k
0
votes
4
answers
257
views
4
answers
Comment: C: Infer publication date by Pubmed ID
... That would be a possibility, but I need to do it basically for all the papers ever published! It would be a bit overkill, specially considering that with a SQL query I could simply calculate the max and min pmid per year. How would you structure such a query with the eutils? ...
written 9 weeks ago by Giovanni M Dall'Olio24k
3
votes
4
answers
257
views
5 follow
4
answers
Infer publication date by Pubmed ID
... I have a table of several thousands of pubmed ids, and I wonder if there is a smart way to infer the publication date for each of them. My first thought was to search for a table somewhere with a column of the pubmed id together with the publication date. However, since the pubmed ids are associat ...
year pmid pubmed written 9 weeks ago by Giovanni M Dall'Olio24k
2
votes
3
answers
426
views
3
answers
Comment: C: How to add tophat and bowtie to the path?
... No because the paths in the PATH variable will be duplicated: $HOME/bin:/home/name/bin:/home/name/bin:$PATH ...
written 10 weeks ago by Giovanni M Dall'Olio24k

Latest awards to Giovanni M Dall'Olio

Teacher 6 days ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Teacher 18 days ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Great Question 6 weeks ago, created a question with more than 5,000 views. For The New Grch38 Human Genome Browser Has Arrived!
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Which Genes Are Contained In The Alternate Reference Loci In Hg38?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Scholar 3 months ago, created an answer that has been accepted. For A: How TCGA generanker works ?
Great Question 4 months ago, created a question with more than 5,000 views. For The New Grch38 Human Genome Browser Has Arrived!
Appreciated 4 months ago, created a post with more than 5 votes. For A: The Relationship Between Protein Abundance And Protein Function
Appreciated 4 months ago, created a post with more than 5 votes. For A: The Relationship Between Protein Abundance And Protein Function
Popular Question 4 months ago, created a question with more than 1,000 views. For Which Genes Are Contained In The Alternate Reference Loci In Hg38?
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Scholar 6 months ago, created an answer that has been accepted. For A: How TCGA generanker works ?
Scholar 6 months ago, created an answer that has been accepted. For A: How TCGA generanker works ?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: Unable to install SIFT in Ubuntu
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Appreciated 7 months ago, created a post with more than 5 votes. For A: How to convert old entrez id to updated-entrez id in R?
Scholar 7 months ago, created an answer that has been accepted. For A: How TCGA generanker works ?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: Computing Number Of Nucleotide And Genes On Each Chromosome

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 870 users visited in the last hour