Moderator: Giovanni M Dall'Olio

Reputation:
24,680
Status:
Trusted
Location:
London, UK
Website:
http://bioinfoblog.it/
Twitter:
dalloliogm
Scholar ID:
Google Scholar Page
Last seen:
2 days ago
Joined:
7 years, 2 months ago
Email:
d*********@gmail.com

Research Associate at the King's College of London. Interested in human population genetics and cancer.

Posts by Giovanni M Dall'Olio

<prev • 1,358 results • page 1 of 136 • next >
1
vote
0
answers
108
views
0
answers
Comment: C: Why we need a distributed assembler based on MPI/Mapreduce when we can store Deb
... Who told you that you need a distributed assembler? As far as I know, there are very few tools based on Map Reduce available at the moment. ...
written 27 days ago by Giovanni M Dall'Olio25k
0
votes
5
answers
301
views
5
answers
Comment: C: Research advice needed
... Where are you based? Is there any local community of bioinformaticians that could help you? ...
written 6 weeks ago by Giovanni M Dall'Olio25k
0
votes
5
answers
237
views
5
answers
Answer: A: retriving barcodes from TCGA using r
... There is a bioconductor package called [tcgaBiolinks][1]. I've never used but it should have the function you are looking for. [1]: https://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/tcgaBiolinks.html ...
written 8 weeks ago by Giovanni M Dall'Olio25k
0
votes
0
answers
341
views
0
answers
Comment: C: Genomics tutor needed
... https://www.meetup.com/Bioinformatics-London ...
written 8 weeks ago by Giovanni M Dall'Olio25k
0
votes
0
answers
341
views
0
answers
Comment: C: Genomics tutor needed
... I would argue that BigQuery and HDFS are good file systems for genomics data, but unfortunately few NGS analysis tools support them, so there is currently not much advantage from using them. ...
written 8 weeks ago by Giovanni M Dall'Olio25k
0
votes
0
answers
341
views
0
answers
Comment: C: Genomics tutor needed
... There is a bioinformatics meetup group in London, next meeting is this Thursday (but I won't be able to come this time) ...
written 8 weeks ago by Giovanni M Dall'Olio25k
2
votes
4
answers
307
views
4
answers
Answer: A: Infer publication date by Pubmed ID
... Thanks everybody. Just for reference, I've decided to download the whole medline and parse the file locally, as I wanted to avoid making hundreds of thousands query updated. First, I've downloaded the files from ftp://ftp.ncbi.nlm.nih.gov/pubmed/baseline Since these are xml files, I've extracted ...
written 8 weeks ago by Giovanni M Dall'Olio25k
0
votes
4
answers
307
views
4
answers
Comment: C: Infer publication date by Pubmed ID
... I see! That's too bad, it means I really need to get a table then. ...
written 3 months ago by Giovanni M Dall'Olio25k
0
votes
4
answers
307
views
4
answers
Comment: C: Infer publication date by Pubmed ID
... That would be a possibility, but I need to do it basically for all the papers ever published! It would be a bit overkill, specially considering that with a SQL query I could simply calculate the max and min pmid per year. How would you structure such a query with the eutils? ...
written 3 months ago by Giovanni M Dall'Olio25k
3
votes
4
answers
307
views
5 follow
4
answers
Infer publication date by Pubmed ID
... I have a table of several thousands of pubmed ids, and I wonder if there is a smart way to infer the publication date for each of them. My first thought was to search for a table somewhere with a column of the pubmed id together with the publication date. However, since the pubmed ids are associat ...
year pmid pubmed written 3 months ago by Giovanni M Dall'Olio25k

Latest awards to Giovanni M Dall'Olio

Appreciated 2 days ago, created a post with more than 5 votes. For What Is Your Experience With The String (Interactions) Database?
Teacher 2 days ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Teacher 8 days ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Popular Question 13 days ago, created a question with more than 1,000 views. For A 'Logo' Or Symbol To Represent The Concept Of A "Folded Protein"?
Good Answer 15 days ago, created an answer that was upvoted at least 5 times. For A: Should Biostar Be Switched Over To The Stackexchange Network?
Good Answer 15 days ago, created an answer that was upvoted at least 5 times. For A: Should Biostar Be Switched Over To The Stackexchange Network?
Good Answer 19 days ago, created an answer that was upvoted at least 5 times. For A: Should Biostar Be Switched Over To The Stackexchange Network?
Popular Question 19 days ago, created a question with more than 1,000 views. For Which Genes Are Contained In The Alternate Reference Loci In Hg38?
Appreciated 22 days ago, created a post with more than 5 votes. For What Is Your Experience With The String (Interactions) Database?
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Great Question 11 weeks ago, created a question with more than 5,000 views. For The New Grch38 Human Genome Browser Has Arrived!
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Popular Question 3 months ago, created a question with more than 1,000 views. For Which Genes Are Contained In The Alternate Reference Loci In Hg38?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Scholar 4 months ago, created an answer that has been accepted. For A: How TCGA generanker works ?
Great Question 5 months ago, created a question with more than 5,000 views. For The New Grch38 Human Genome Browser Has Arrived!
Appreciated 5 months ago, created a post with more than 5 votes. For A: The Relationship Between Protein Abundance And Protein Function
Appreciated 5 months ago, created a post with more than 5 votes. For A: The Relationship Between Protein Abundance And Protein Function
Popular Question 6 months ago, created a question with more than 1,000 views. For Which Genes Are Contained In The Alternate Reference Loci In Hg38?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Automated Literature Search For List Of Genes
Scholar 7 months ago, created an answer that has been accepted. For A: How TCGA generanker works ?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1501 users visited in the last hour