Moderator: RamRS

gravatar for RamRS
RamRS21k
Reputation:
20,840
Status:
Trusted
Location:
Houston, TX
Twitter:
@_RamRS
Scholar ID:
Google Scholar Page
Last seen:
3 hours ago
Joined:
5 years, 9 months ago
Email:
r****@nyu.edu

Bioinformatician turned Microsoft technologies developer turned bioinformatician. I love messing with text. UNIX>R>Python>Perl programmer, Excel pro, master Googler, database expert. 

I'm an amateur biologist interested in translational human genetics and healthcare.

Posts by RamRS

<prev • 4,440 results • page 1 of 444 • next >
0
votes
0
answers
33
views
0
answers
Comment: C: little discrepancies gnomAD DB vs. website
... I think this is a known discrepancy. Maybe someone more familiar with gnomAD can explain exactly why this happens. ...
written 6 hours ago by RamRS21k
0
votes
1
answer
101
views
1
answers
Comment: C: Extract the match content and merge them
... You don't need to add `all.y=FALSE`, it's programmed to be set to `FALSE` unless you explicitly set it to `TRUE` > > ?merge > ... > ... > ... > ## S3 method for class 'data.frame' > merge(x, y, by = intersect(names(x), names(y)), > by.x = ...
written 6 hours ago by RamRS21k
0
votes
1
answer
101
views
1
answers
Comment: C: Extract the match content and merge them
... `grep -Fxf` is the way to go, as long as OP knows what they're doing and the edge cases where it could fail. ...
written 9 hours ago by RamRS21k
0
votes
1
answer
101
views
1
answers
Comment: C: Extract the match content and merge them
... That is not possible - your output does not have `V1`-style headers, but has proper headers. Either your command is wrong or your output is. ...
written 11 hours ago by RamRS21k
0
votes
0
answers
88
views
0
answers
Comment: C: VarScan warning and exit after Invalid format for pileup at line 1
... Looks like a partial VCF file. Maybe a BCF file? ...
written 13 hours ago by RamRS21k
1
vote
0
answers
51
views
0
answers
Comment: C: TARGET bulk download
... If you solved the question, please add an answer explaining how you solved it so it can help others facing a similar problem in the future. Even if it was a typo or some other "silly" mistake, state it in that answer - those type of mistakes are more common than anyone can imagine. ...
written 1 day ago by RamRS21k
1
vote
0
answers
88
views
0
answers
Comment: C: VarScan warning and exit after Invalid format for pileup at line 1
... You should also add the `samtools` command that you used to generate the pileup, because from the error message it seems like the problem lies there. ...
written 1 day ago by RamRS21k
0
votes
0
answers
88
views
0
answers
Comment: C: VarScan warning and exit after Invalid format for pileup at line 1
... Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (`text` becomes `text`), or select a chunk of text and use the highlighted button to format it as a code block. I've done it for you this time. ...
written 1 day ago by RamRS21k
1
vote
0
answers
126
views
0
answers
Comment: C: Python Script to map reads to reference sequence
... Like genomax said, this sort of task makes no sense. If someone truly wanted you to learn bioinformatics, they would not ask you to solve a complex, high-volume-processing problem that has already been solved dozens of times using a tool that is the opposite of what you should be using (unless they ...
written 2 days ago by RamRS21k
0
votes
0
answers
62
views
0
answers
Comment: C: R Version problems
... What's your R version? Also, these are just warnings and can be ignored unless you encounter problems. Also, please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (`text` becomes `text`), or select a chunk of text and use the ...
written 5 days ago by RamRS21k

Latest awards to RamRS

Teacher 9 days ago, created an answer with at least 3 up-votes. For A: bash loop for alignment RNA-seq data
Scholar 9 days ago, created an answer that has been accepted. For A: "Update" Genotype fields from one VCF file to another
Popular Question 14 days ago, created a question with more than 1,000 views. For Benefit of platinum genomes in WGS experiment
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: bash loop for alignment RNA-seq data
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: bash loop for alignment RNA-seq data
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Benefit of platinum genomes in WGS experiment
Scholar 9 weeks ago, created an answer that has been accepted. For A: "Update" Genotype fields from one VCF file to another
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: bash loop for alignment RNA-seq data
Appreciated 9 weeks ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Commentator 9 weeks ago, created a comment with at least 3 up-votes. For C: Help with RNA-seq analysis
Commentator 9 weeks ago, created a comment with at least 3 up-votes. For C: Help with RNA-seq analysis
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: bash loop for alignment RNA-seq data
Scholar 11 weeks ago, created an answer that has been accepted. For A: "Update" Genotype fields from one VCF file to another
Commentator 12 weeks ago, created a comment with at least 3 up-votes. For C: Help with RNA-seq analysis
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Help with RNA-seq analysis
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Help with RNA-seq analysis
Popular Question 3 months ago, created a question with more than 1,000 views. For Benefit of platinum genomes in WGS experiment
Appreciated 3 months ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: bash loop for alignment RNA-seq data
Scholar 3 months ago, created an answer that has been accepted. For A: bash loop for alignment RNA-seq data
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Help with RNA-seq analysis
Appreciated 3 months ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Help with RNA-seq analysis
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: bash loop for alignment RNA-seq data
Scholar 3 months ago, created an answer that has been accepted. For A: bash loop for alignment RNA-seq data

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1127 users visited in the last hour