Moderator: RamRS

gravatar for RamRS
RamRS30k
Reputation:
29,750
Status:
Trusted
Location:
Baylor College of Medicine, Houston, TX
Twitter:
@_RamRS
Scholar ID:
Google Scholar Page
Last seen:
2 hours ago
Joined:
7 years, 2 months ago
Email:
r****@nyu.edu

Bioinformatician turned Microsoft technologies developer turned bioinformatician. I love messing with text. UNIX>R>Python>Perl programmer, Excel pro, master Googler, database expert. 

I'm an amateur biologist interested in translational human genetics and healthcare.

Posts by RamRS

<prev • 6,418 results • page 1 of 642 • next >
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Comment: C: Reverse complement a fasta sequences based on the coordinates given in csv file?
... Did you write the awk script from scratch? At what stage of writing the script did it stop working and give you the error? ...
written 2 days ago by RamRS30k
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Comment: C: PHATE Clustering Error
... Are you sure the `phate(tumor)` line ran successfully? What is the output of `summary(tumor_PHATE)`? ...
written 2 days ago by RamRS30k
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Comment: C: content negotiation for the ontobee sparql endpoint
... How is this related to bioinformatics? ...
written 2 days ago by RamRS30k
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Comment: C: CADD, SIFT, Polyphen-2, GERPRS scores
... Try PredictSNP, not PredictSNP2: https://loschmidt.chemi.muni.cz/predictsnp1/ and pay attention to individual results, not just PredictSNP's consensus prediction. ...
written 2 days ago by RamRS30k
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Comment: C: CADD, SIFT, Polyphen-2, GERPRS scores
... The best you can do is use a consensus predictor like PredictSNP and see what each individual tool says. These tools have a ton of false positives - they can state that a change affects a protein more than it actually does in reality. You can trust their "benign" predictions, but take their "pathoge ...
written 2 days ago by RamRS30k
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Answer: A: conversion gene id to ensemble id
... Use `as.character` to convert the integer vector to a character vector and it'll work. ...
written 3 days ago by RamRS30k
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Comment: C: How to show significance value (P value) in heatmap cells generated with pheatma
... You should look at the corrplot package. It produces heatmaps based on correlation matrices, and has a lot of customization options. ...
written 3 days ago by RamRS30k
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Comment: C: Creating Interactive Volcano Plots with R and Plot.ly
... Like Kevin said, please tidy up your code. Also, why did you add this as an answer? ...
written 4 days ago by RamRS30k
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Comment: C: Error in reading expression matrix
... If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they work. This will help future users that might find this post find the right answer. ![Upvote|Bookmark|Accept][1] [1]: https://image.ibb.c ...
written 5 days ago by RamRS30k
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Comment: C: Extracting rows on basis of specific column values in R
... If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they work. This will help future users that might find this post find the right answer. ![Upvote|Bookmark|Accept][1] [1]: https://image.ibb.c ...
written 5 days ago by RamRS30k

Latest awards to RamRS

Scholar 3 days ago, created an answer that has been accepted. For A: SnpEff HGVS doesn't match to fields of ref and alt alleles
Teacher 7 days ago, created an answer with at least 3 up-votes. For C: how to add reference alleles to VCF?
Scholar 7 days ago, created an answer that has been accepted. For A: SnpEff HGVS doesn't match to fields of ref and alt alleles
Teacher 7 days ago, created an answer with at least 3 up-votes. For C: how to add reference alleles to VCF?
Appreciated 8 days ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Teacher 9 days ago, created an answer with at least 3 up-votes. For C: sethiyap/fastaR --> faSomeRecords was not found
Scholar 9 days ago, created an answer that has been accepted. For A: Convert article title to pubmed ID
Teacher 14 days ago, created an answer with at least 3 up-votes. For C: sethiyap/fastaR --> faSomeRecords was not found
Teacher 17 days ago, created an answer with at least 3 up-votes. For C: sethiyap/fastaR --> faSomeRecords was not found
Scholar 17 days ago, created an answer that has been accepted. For A: Convert article title to pubmed ID
Scholar 28 days ago, created an answer that has been accepted. For A: Convert article title to pubmed ID
Scholar 29 days ago, created an answer that has been accepted. For A: Convert article title to pubmed ID
Popular Question 29 days ago, created a question with more than 1,000 views. For Meta: Should accepting your own answers multiple times get you points each time?
Scholar 4 weeks ago, created an answer that has been accepted. For A: Convert article title to pubmed ID
Great Question 4 weeks ago, created a question with more than 5,000 views. For Beware the differences between /bin/sh and /bin/bash
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: sethiyap/fastaR --> faSomeRecords was not found
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: sethiyap/fastaR --> faSomeRecords was not found
Scholar 5 weeks ago, created an answer that has been accepted. For A: Convert article title to pubmed ID
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: sethiyap/fastaR --> faSomeRecords was not found
Scholar 5 weeks ago, created an answer that has been accepted. For A: Convert article title to pubmed ID

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