Moderator: Ram

gravatar for Ram
Ram11k
Reputation:
10,740
Status:
Trusted
Location:
New York
Twitter:
@_RamRS
Scholar ID:
Google Scholar Page
Last seen:
an hour ago
Joined:
3 years, 7 months ago
Email:
r****@nyu.edu

Bioinformatician turned Microsoft technologies developer turned bioinformatician. I love messing with text. UNIX/Perl/Python/R programmer, Excel pro, master Googler, database expert. 

I'm an amateur biologist interested in translational human genetics and healthcare.

Twitter: @_ramrs

Posts by Ram

<prev • 2,296 results • page 1 of 230 • next >
0
votes
1
answer
5.2k
views
1
answers
Comment: C: bash loop for alignment RNA-seq data
... How well did you understand/customize the script? The `cut` operates on exact character numbering, and might not be suitable to your case. If you cut the first 13 characters of a long path name, you might end up with a character string that doesn't mean much. Have fun with bash! :) ...
written 20 hours ago by Ram11k
1
vote
1
answer
122
views
1
answers
Comment: C: extracting targe genes of a list of TFs
... WDC, her points have not gone up, I agree. Prior to the incident, she and another user had a circular upvote thing going, plus she had multiple Scholar trophies (+10 points each) from answering her own questions in immediately after asking them. I look out for such behavior, and unlike the last time ...
written 21 hours ago by Ram11k
0
votes
1
answer
122
views
1
answers
Comment: C: extracting targe genes of a list of TFs
... I am sorry, but I will believe that you're not gaming the system when I don't see gaming behavior. Right now, this one time doesn't prove anything either way, but I weighed your past activities plus detailed the current circumstance (see below) to alert admins to this. ...
written 21 hours ago by Ram11k
1
vote
1
answer
5.2k
views
1
answers
Comment: C: bash loop for alignment RNA-seq data
... This script is customized to OP's situation. You may want to modify it to fit your use case. Given the script involves a `ls *.fastq`, you'll need to either run a valid version of it in the dir with the fastq files, or change the `ls` part of the script suitably. ...
written 1 day ago by Ram11k
0
votes
1
answer
122
views
1
answers
Comment: C: extracting targe genes of a list of TFs
... Hey https://www.biostars.org/u/15530/ , given you did not mention the existence of the list `listof35TFs`, you have a pattern of answering and accepting your own answers only, and you answered this literally 1 hour after you asked it, I have to conclude you're gaming the system. Please do not repeat ...
written 1 day ago by Ram11k
1
vote
1
answer
122
views
1
answers
Comment: C: extracting targe genes of a list of TFs
... Hey https://www.biostars.org/u/2/ , I think this person is gaming the system again. We should really try and set the points to "answer your own question" to 0. ...
written 1 day ago by Ram11k
2
votes
2
answers
126
views
2
answers
Comment: C: Converting Uniprot File to a Fasta File in Perl
... Use BioPerl so each feature can be accessed without having to parse plain text. ...
written 4 days ago by Ram11k
0
votes
0
answers
74
views
0
answers
Comment: C: genes close to random genomic locations
... Try the UCSC Genome Browser's mysql databases? ...
written 4 days ago by Ram11k
1
vote
1
answer
78
views
1
answers
Comment: C: Calculate the b allele frequency from a VCF file
... What's the GT FORMAT? That information would help a lot in figuring out what the genotype value you've given us means. ...
written 4 days ago by Ram11k
0
votes
0
answers
70
views
0
answers
Comment: C: bioperl MapTiling error
... I'd print out to stdout the query that's causing this error, then examine a GUI based BLAST output to check on the HSPs. ...
written 4 days ago by Ram11k

Latest awards to Ram

Commentator 2 days ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
Scholar 21 days ago, created an answer that has been accepted. For A: Problem using a custom blast database in tblastx
Appreciated 4 weeks ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Problem using a custom blast database in tblastx
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Duplicate @Sq Lines In Sam File Header
Scholar 6 weeks ago, created an answer that has been accepted. For A: Problem using a custom blast database in tblastx
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: Problem using a custom blast database in tblastx
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Duplicate @Sq Lines In Sam File Header
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Duplicate @Sq Lines In Sam File Header
Commentator 10 weeks ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
Commentator 10 weeks ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
Commentator 11 weeks ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
Cylon 3 months ago, received 1,000 up votes.
Scholar 3 months ago, created an answer that has been accepted. For A: How do I ask a question on Biostars?
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Next Generation Sequencing
Scholar 3 months ago, created an answer that has been accepted. For A: How do I ask a question on Biostars?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How do I ask a question on Biostars?
Popular Question 4 months ago, created a question with more than 1,000 views. For Check if REF allele is minor allele in any variant
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How do I ask a question on Biostars?
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Next Generation Sequencing
Scholar 5 months ago, created an answer that has been accepted. For A: How do I ask a question on Biostars?
Popular Question 6 months ago, created a question with more than 1,000 views. For Check if REF allele is minor allele in any variant
Popular Question 7 months ago, created a question with more than 1,000 views. For Unbelievably rapid NGS analysis by Churchill

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 827 users visited in the last hour