Moderator: Ram

gravatar for Ram
Ram12k
Reputation:
11,980
Status:
Trusted
Location:
New York
Twitter:
@_RamRS
Scholar ID:
Google Scholar Page
Last seen:
8 hours ago
Joined:
4 years, 2 months ago
Email:
r****@nyu.edu

Bioinformatician turned Microsoft technologies developer turned bioinformatician. I love messing with text. UNIX>R>Python>Perl programmer, Excel pro, master Googler, database expert. 

I'm an amateur biologist interested in translational human genetics and healthcare.

Twitter: @_ramrs

Posts by Ram

<prev • 2,524 results • page 1 of 253 • next >
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Comment: C: blastn blastdbcheck errors
... Please format your code so it's easier to read. Use the 101010 button you see near the double quotes on the formatting bar to format your code. ...
written 14 hours ago by Ram12k
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Comment: C: Removing running backlash from my fasta sequences
... What's the advantage of `seqkit` over `sed` here? ...
written 23 hours ago by Ram12k
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Answer: A: Removing running backlash from my fasta sequences
... sed 's#\\##g' fasta_file.fa >fasta_cleaned.fa. ...
written 1 day ago by Ram12k
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Comment: C: GeneMapper 4.XXX Online Activation
... Why do you ask specifically about online activation/registration? ...
written 1 day ago by Ram12k
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Comment: C: Useful Bash Commands To Handle Fasta Files
... 1. Save all these quick scripts in a file under, say, `~/.myShellScripts/fasta_utils.sh` 2. Add `source ~/.myShellScripts/fasta_utils.sh` to `~/.${SHELL}rc` 3. Better modular maintenance :-) I also save everything in `~/.zshrc`, but I love how oh-my-zsh does stuff. They complicate it too much ...
written 2 days ago by Ram12k
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Comment: C: Where can I download Clinical or Medical Exome?
... Gene names and Excel ... just be a bit careful: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1044-7 ...
written 2 days ago by Ram12k
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Comment: C: Where can I download Clinical or Medical Exome?
... >94% of HGMD AKA exonic variants. SMH ...
written 3 days ago by Ram12k
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Comment: C: Where can I download Clinical or Medical Exome?
... My thoughts exactly. ...
written 3 days ago by Ram12k
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Comment: C: Where can I download Clinical or Medical Exome?
... I was wondering if CES is somehow a subset of WES. Not sure how anyone got the 3000 number. Ideally, one would go (by how confident one is) fro a targeted gene capture -> whole exome -> whole genome. Maybe the targeted part is what's being called the CES? In which case, CES would refer to the ...
written 3 days ago by Ram12k
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Answer: A: Bioinformatics M.S. from NYC Tandon School of Engineering online
... I have a Masters from NYU Tandon School of Engineering (back from when it was Polytechnic School of Engineering). The best part of NYU SoE (I refuse to call it Tandon) is that you can take courses from other NYU schools. See if you have access to that in the online program. Is Prof. Brathwaite sti ...
written 4 days ago by Ram12k

Latest awards to Ram

Commentator 29 days ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
Good Answer 3 months ago, created an answer that was upvoted at least 5 times. For A: bash loop for alignment RNA-seq data
Scholar 4 months ago, created an answer that has been accepted. For A: Problem using a custom blast database in tblastx
Appreciated 4 months ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Appreciated 4 months ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Problem using a custom blast database in tblastx
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Problem using a custom blast database in tblastx
Scholar 5 months ago, created an answer that has been accepted. For A: Problem using a custom blast database in tblastx
Scholar 5 months ago, created an answer that has been accepted. For A: Problem using a custom blast database in tblastx
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Problem using a custom blast database in tblastx
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Problem using a custom blast database in tblastx
Appreciated 7 months ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Good Answer 7 months ago, created an answer that was upvoted at least 5 times. For A: bash loop for alignment RNA-seq data
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
Scholar 8 months ago, created an answer that has been accepted. For A: Problem using a custom blast database in tblastx
Appreciated 8 months ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Problem using a custom blast database in tblastx
Popular Question 9 months ago, created a question with more than 1,000 views. For Duplicate @Sq Lines In Sam File Header
Scholar 9 months ago, created an answer that has been accepted. For A: Problem using a custom blast database in tblastx
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Problem using a custom blast database in tblastx

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