Moderator: Ram

gravatar for Ram
Ram32k
Reputation:
32,040
Status:
Trusted
Location:
Baylor College of Medicine, Houston, TX
Scholar ID:
Google Scholar Page
Last seen:
8 hours ago
Joined:
7 years, 7 months ago
Email:
r****@nyu.edu

Bioinformatician turned Microsoft technologies developer turned bioinformatician. I love messing with plain text. UNIX>R>Python>Perl programmer, Excel pro, master Googler, database expert. 

I'm an amateur biologist interested in promoting better software development and database management practices to ease data usage in a biological context.

Posts by Ram

<prev • 7,034 results • page 1 of 704 • next >
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Comment: C: How to insert records in a mysql database with click path?
... Hello projetoic! It appears that your post has been cross-posted to another site: https://bioinformatics.stackexchange.com/questions/15438/ This is typically not recommended as it runs the risk of annoying people in both communities. ...
written 12 hours ago by Ram32k
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Comment: C: How to select a "representative" transcript in multiple transcript variants from
... I don't think so. The closest I've gotten is with the canonical transcript option in VEP. ...
written 12 hours ago by Ram32k
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Comment: C: How to convert the position of probes into Gene symbol or Entrez_id(Platform GPL
... Ahh, I'm guessing you're in China/Iran - users there have reported problems with certain website features. Sorry for my curt comment and please let me know if I can help some more. ...
written 13 hours ago by Ram32k
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Comment: C: How to convert the position of probes into Gene symbol or Entrez_id(Platform GPL
... I just cleaned up your post. Please don't separate "tags" using spaces, use Enter/Return instead. ...
written 21 hours ago by Ram32k
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Comment: C: Cytoscape - long list of proteins, very messy result
... Please see https://www.biostars.org/p/309884/ to add your images properly. You need **the direct link to the image** or the **HTML embed code**, not the link to the webpage that has the image embedded (which is what you have used here) ...
written 1 day ago by Ram32k
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Comment: C: Cytoscape - long list of proteins, very messy result
... This post is a duplicate of https://www.biostars.org/p/493339/ and has been closed. ...
written 1 day ago by Ram32k
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Comment: C: Does the countToFPKM package work for single end RNA seq or its only for paired
... So you searched for "get RPKM from counts" and the only thing you see is the countToFPKM package? ...
written 2 days ago by Ram32k
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Comment: C: Does the countToFPKM package work for single end RNA seq or its only for paired
... What have you tried? Have you searched online for "get RPKM from raw counts"? ...
written 2 days ago by Ram32k
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Comment: C: Does the countToFPKM package work for single end RNA seq or its only for paired
... Does the FPKM metric apply to SE data? What would be the difference between RPKM and FPKM in the context of SE data? ...
written 2 days ago by Ram32k
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Comment: C: change the header of fasta sequence
... This is not a complete answer, and belongs as a comment. "Use tools A and B" are suggestions, not solutions. ...
written 3 days ago by Ram32k

Latest awards to Ram

Scholar 21 days ago, created an answer that has been accepted. For A: Convert article title to pubmed ID
Popular Question 26 days ago, created a question with more than 1,000 views. For HGVS representation of intronic variants
Appreciated 5 weeks ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Scholar 6 weeks ago, created an answer that has been accepted. For C: merging multiple vcfs by column in Picard
Great Question 7 weeks ago, created a question with more than 5,000 views. For PI_HAT and Z-values for relationships (PLINK IBD calculation)
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For C: how to add reference alleles to VCF?
Scholar 8 weeks ago, created an answer that has been accepted. For C: merging multiple vcfs by column in Picard
Good Answer 9 weeks ago, created an answer that was upvoted at least 5 times. For A: Question about undertaking a Masters in Bioinformatics, with no work experience
Scholar 10 weeks ago, created an answer that has been accepted. For C: merging multiple vcfs by column in Picard
Good Answer 11 weeks ago, created an answer that was upvoted at least 5 times. For A: Question about undertaking a Masters in Bioinformatics, with no work experience
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For C: how to add reference alleles to VCF?
Scholar 11 weeks ago, created an answer that has been accepted. For A: SnpEff HGVS doesn't match to fields of ref and alt alleles
Appreciated 3 months ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Scholar 3 months ago, created an answer that has been accepted. For A: Problem using a custom blast database in tblastx
Appreciated 3 months ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Teacher 4 months ago, created an answer with at least 3 up-votes. For C: how to add reference alleles to VCF?
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Question about undertaking a Masters in Bioinformatics, with no work experience
Appreciated 4 months ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Scholar 4 months ago, created an answer that has been accepted. For A: SnpEff HGVS doesn't match to fields of ref and alt alleles
Scholar 5 months ago, created an answer that has been accepted. For A: SnpEff HGVS doesn't match to fields of ref and alt alleles
Teacher 5 months ago, created an answer with at least 3 up-votes. For C: how to add reference alleles to VCF?
Scholar 5 months ago, created an answer that has been accepted. For A: SnpEff HGVS doesn't match to fields of ref and alt alleles
Teacher 5 months ago, created an answer with at least 3 up-votes. For C: how to add reference alleles to VCF?
Commentator 5 months ago, created a comment with at least 3 up-votes. For A: What are the 2 main justifications (or types of experiments) for collecting RNA-

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