Moderator: Ram

gravatar for Ram
Ram11k
Reputation:
11,060
Status:
Trusted
Location:
New York
Twitter:
@_RamRS
Scholar ID:
Google Scholar Page
Last seen:
3 hours ago
Joined:
3 years, 9 months ago
Email:
r****@nyu.edu

Bioinformatician turned Microsoft technologies developer turned bioinformatician. I love messing with text. UNIX/Perl/Python/R programmer, Excel pro, master Googler, database expert. 

I'm an amateur biologist interested in translational human genetics and healthcare.

Twitter: @_ramrs

Posts by Ram

<prev • 2,364 results • page 1 of 237 • next >
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Comment: C: BioPython Error Messaging
... This is a programming question - it concerns loops and conditions. I'm not convinced it qualifies as bioinformatics just because it involves BioPython. I'd redirect you to SO but that place is hell. My $0.02 - create a dict of IDs and check against that. Or you know, use bioawk if you're not partic ...
written 18 hours ago by Ram11k
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Comment: C: BioPython Error Messaging
... I don't see how this is bioinformatics - this is purely programming. ...
written 19 hours ago by Ram11k
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Comment: C: Error in raw count file of .sam after alignment on HGCh38
... Why download the GRCh38 indexes and use them with the GRCh37 gtf file? Am I missing something here? ...
written 8 days ago by Ram11k
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Answer: C: Problem with vcftools comparison, results dont make sense
... Your second file is not a VCF file - it needs a header. Try copying all the `^[#]` lines from your principal VCF file and then compare, you should see results that make sense. ...
written 9 days ago by Ram11k
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Comment: C: How can i use my own data set in an existing github code using R language
... Hello Tano! We believe that this post does not fit the main topic of this site. This is not a bioinformatics question. You have already asked StackOverflow, which is the right place to go for these questions. For this reason we have closed your question. This allows us to keep the site focused o ...
written 9 days ago by Ram11k
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Comment: C: SNP for RNA-Seq
... >I am working on mouse model, Illumina HiSeq 2500, STAR aligner and reference based alignment. Please edit your question and add the above information to it. That way, people need not read through comments to get all relevant information. ...
written 9 days ago by Ram11k
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Comment: C: SNP for RNA-Seq
... You mean to ask if you can use the `samtools mpileup` utility, surely? The command can be used anywhere you want :) What kind of RNAseq data do you have? What organism is it for, and are you aligning it to a reference or assembling it de novo? ...
written 9 days ago by Ram11k
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Comment: C: How can i use my own data set in an existing github code using R language
... This is not "software error". If the code has good separation of concerns - that is, it is not tightly coupled to the data, switching out the dataset should be a relatively trivial task. We are going to need more details if you would like a more relevant answer. ...
written 10 days ago by Ram11k
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Comment: C: Read a text file into a list
... Hmm, it does fall on the border, but this is more CS than actual bioinformatics. Anyway, I'll reopen the question. ...
written 12 days ago by Ram11k
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Comment: C: Read a text file into a list
... Hello Assa Yeroslaviz! We believe that this post does not fit the main topic of this site. Not a bioinformatics question. Please ask StackOverflow For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagr ...
written 12 days ago by Ram11k

Latest awards to Ram

Teacher 29 days ago, created an answer with at least 3 up-votes. For A: Problem using a custom blast database in tblastx
Appreciated 6 weeks ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Good Answer 6 weeks ago, created an answer that was upvoted at least 5 times. For A: bash loop for alignment RNA-seq data
Commentator 8 weeks ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
Scholar 11 weeks ago, created an answer that has been accepted. For A: Problem using a custom blast database in tblastx
Appreciated 12 weeks ago, created a post with more than 5 votes. For Meta: Markdown in Biostars (now enabled)
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Problem using a custom blast database in tblastx
Popular Question 3 months ago, created a question with more than 1,000 views. For Duplicate @Sq Lines In Sam File Header
Scholar 3 months ago, created an answer that has been accepted. For A: Problem using a custom blast database in tblastx
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Problem using a custom blast database in tblastx
Popular Question 3 months ago, created a question with more than 1,000 views. For Duplicate @Sq Lines In Sam File Header
Popular Question 3 months ago, created a question with more than 1,000 views. For Duplicate @Sq Lines In Sam File Header
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Cuffdiff input error
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Scholar 5 months ago, created an answer that has been accepted. For A: How do I ask a question on Biostars?
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: Next Generation Sequencing
Scholar 5 months ago, created an answer that has been accepted. For A: How do I ask a question on Biostars?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: How do I ask a question on Biostars?
Popular Question 6 months ago, created a question with more than 1,000 views. For Check if REF allele is minor allele in any variant
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Commentator 6 months ago, created a comment with at least 3 up-votes. For C: Next Generation Sequencing
Scholar 7 months ago, created an answer that has been accepted. For A: How do I ask a question on Biostars?

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