Moderator: _r_am

gravatar for _r_am
_r_am31k
Reputation:
30,590
Status:
Trusted
Location:
Baylor College of Medicine, Houston, TX
Scholar ID:
Google Scholar Page
Last seen:
18 minutes ago
Joined:
7 years, 4 months ago
Email:
r****@nyu.edu

Bioinformatician turned Microsoft technologies developer turned bioinformatician. I love messing with text. UNIX>R>Python>Perl programmer, Excel pro, master Googler, database expert. 

I'm an amateur biologist interested in translational human genetics and healthcare.

Posts by _r_am

<prev • 6,604 results • page 1 of 661 • next >
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Comment: C: Merging lots of csv files in on master one
... In that case, you can split the list into 3-4 chunks, but I don't think you'll use a lot of memory. If you're still particular about using bash, try `join` instead of `paste`. ...
written 38 minutes ago by _r_am31k
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Comment: C: Merging lots of csv files in on master one
... I'd recommend using R. You can then `list.files` to generate a list of the CSV files, then `lapply` the function `read.table` along this list to get a list of data frames, and at the end, use `Reduce(merge, list_of_data_frames)` to get a single data frame. ...
written 1 hour ago by _r_am31k
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Comment: C: opening fasta file in python3
... Please explain what you missed and how you solved it so your post can be useful to those making a similar mistake in the future. ...
written 2 hours ago by _r_am31k
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Comment: C: Differential analysis isoform lvl or gene lvl ?
... Please use full words - `level`, not `lvl`. Smalll things like these are the difference between being a professional and not being one. ...
written 19 hours ago by _r_am31k
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Comment: C: Error in grid.Call(C_stringMetric, as.graphicsAnnot(x$label))
... Please don't ask to be spoonfed each step. Just let us know if it worked or not. ...
written 21 hours ago by _r_am31k
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Comment: C: Filter per tile quality
... Please see https://www.biostars.org/p/309884/ to add your images properly. You need **the direct link to the image** or the **HTML embed code**, not the link to the webpage that has the image embedded (which is what you have used here) ...
written 1 day ago by _r_am31k
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Comment: C: Batch run in R
... The section vectorization has exactly what you need. Please read it more carefully. ...
written 1 day ago by _r_am31k
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Comment: C: Error in grid.Call(C_stringMetric, as.graphicsAnnot(x$label))
... > I tried to use `ggsave` to save the plot And what happened? Why use an eps device instead of, say, png or pdf? ...
written 1 day ago by _r_am31k
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Comment: C: Error in grid.Call(C_stringMetric, as.graphicsAnnot(x$label))
... Try using `ggsave` to write the plot to a file and then opening that file. This could be a problem with the graphical display device. ...
written 1 day ago by _r_am31k
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Comment: C: Why does annotate give an error?
... 1. Use nano/emacs/vim - not gedit. Learn to work on the command line, gedit is a graphical editor. 2. You can add to PATH on just `.bashrc`, there is no need to edit your `.profile` (whatever that file is - I've heard of `.bash_profile`, but not `.profile`) 3. **Do NOT** edit PATH to be just a singl ...
written 1 day ago by _r_am31k

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Scholar 18 days ago, created an answer that has been accepted. For A: Problem using a custom blast database in tblastx
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Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: how to add reference alleles to VCF?
Good Answer 8 weeks ago, created an answer that was upvoted at least 5 times. For A: Question about undertaking a Masters in Bioinformatics, with no work experience
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Scholar 8 weeks ago, created an answer that has been accepted. For A: SnpEff HGVS doesn't match to fields of ref and alt alleles
Scholar 9 weeks ago, created an answer that has been accepted. For A: SnpEff HGVS doesn't match to fields of ref and alt alleles
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For C: how to add reference alleles to VCF?
Scholar 9 weeks ago, created an answer that has been accepted. For A: SnpEff HGVS doesn't match to fields of ref and alt alleles
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