Moderator: Michael Dondrup

gravatar for Michael Dondrup
Reputation:
40,220
Status:
Trusted
Location:
Bergen, Norway
Website:
https://licebase.org/
Last seen:
2 hours ago
Joined:
6 years, 12 months ago
Email:
m*******@gmail.com

 

PhD in bioinformatics. Currently Researcher at the Sea Lice Research Centre, responsible for LiceBase, an infrastructure for genomic resources of sea lice, and analysis of genomics data from emerging genomes.

Posts by Michael Dondrup

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Comment: C: How to compare my phylogenetic trees ??
... Please help me understand what you are in fact trying to do! - Please convince me that your tree is optimal, why do you think one of your trees is optimal? If you already knew it was optimal for some reason, then you wouldn't need to validate. If you have a well known Species Tree (your 'optimal tr ...
written 15 hours ago by Michael Dondrup40k
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Comment: C: oligonucleotide designing for microrna
... I deleted the other question. On the topic: - what makes you sure an anti(sense)-sequence will in fact block miRNA? Any published work doing the same, there is little sense in trying something computationally when the biology doesn't play as we want. - how to deliver a single stranded RNA to a c ...
written 16 hours ago by Michael Dondrup40k
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Comment: C: SOFTWARE/TOOLS FOR ANTI OLIGONCLEOTIDE DESIGN AGAINST MICRORNAS
... Just edit (using the 'edit' link) your question and make it more readable, then I will re-open it. ...
written 16 hours ago by Michael Dondrup40k
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Comment: C: Please Help with pathway database !!!
... Please use an informative title, please help is not very informative. In addition your question is lacking context: - Which species are we talking? - how did you infer proteome profile (mass spec? predicted proteins, something else?) - what kind of searches do you want to perform exactly (Blast, ...
written 16 hours ago by Michael Dondrup40k
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Comment: C: SOFTWARE/TOOLS FOR ANTI OLIGONCLEOTIDE DESIGN AGAINST MICRORNAS
... Hello bhagyashreemohanty0! We believe that this post does not fit the main topic of this site. Please don't use all caps! For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in ...
written 16 hours ago by Michael Dondrup40k
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Comment: C: Assigning values in dataframe based on matching columns between 2 different data
... Hello pratyush.pati.24! We believe that this post does not fit the main topic of this site. Not a bioinformatics question. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in ...
written 1 day ago by Michael Dondrup40k
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Comment: C: High throughput RNA secondary structure predictor
... Have you tried RNAfold? A local install should be able to handle this size of problems. ...
written 1 day ago by Michael Dondrup40k
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Comment: C: how to calculate all atom to all atom distances for less than 5 angstrom
... Hello python! Questions similar to yours can already be found at: how to extract coordinates from Two PDB files and how to calculate all atom to all atom distances We have closed your question to allow us to keep similar content in the same thread. If you disagree with this ...
written 1 day ago by Michael Dondrup40k
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Comment: C: Comparing two columns and replace in R Package
... Hello bwczech! We believe that this post does not fit the main topic of this site. Not a bioinformatics question. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a reply ...
written 2 days ago by Michael Dondrup40k
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Comment: C: What genes from Tuberculosis WGS to select for building a phylogenetic tree?
... Hello vassialk! We believe that this post does not fit the main topic of this site. Not a real question For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a reply below, we' ...
written 2 days ago by Michael Dondrup40k

Latest awards to Michael Dondrup

Commentator 2 days ago, created a comment with at least 3 up-votes. For C: Why Don'T We Use Binary Format?
Teacher 4 days ago, created an answer with at least 3 up-votes. For A: Heat Map With Two Color Scales
Scholar 4 days ago, created an answer that has been accepted. For A: mirDeep2 using bowtie vs. bwa - why do more aligned reads yield less miRNA
Teacher 17 days ago, created an answer with at least 3 up-votes. For A: Heat Map With Two Color Scales
Commentator 20 days ago, created a comment with at least 3 up-votes. For C: Why Don'T We Use Binary Format?
Scholar 5 weeks ago, created an answer that has been accepted. For A: In R, how do I apply regexes to specific parts of a string that contains a patte
Commentator 7 weeks ago, created a comment with at least 3 up-votes. For C: Why Don'T We Use Binary Format?
Scholar 10 weeks ago, created an answer that has been accepted. For A: In R, how do I apply regexes to specific parts of a string that contains a patte
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Heat Map With Two Color Scales
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Heat Map With Two Color Scales
Appreciated 3 months ago, created a post with more than 5 votes. For How To Define Percent-Identity From A Cigar String/ A Bam/Sam File?
Scholar 3 months ago, created an answer that has been accepted. For A: mirDeep2 using bowtie vs. bwa - why do more aligned reads yield less miRNA
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How To Run Bfast In Cluster Computing
Scholar 3 months ago, created an answer that has been accepted. For A: mirDeep2 using bowtie vs. bwa - why do more aligned reads yield less miRNA
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How To Run Bfast In Cluster Computing
Scholar 3 months ago, created an answer that has been accepted. For A: Remove rows in a matrix containing Hamming distance less than a set value
Appreciated 3 months ago, created a post with more than 5 votes. For C: How To Extracting Fastq Sequence For Given Fastq Ids And Fastq File
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: How To Extracting Fastq Sequence For Given Fastq Ids And Fastq File
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Can We Have A Collection Of Interesting Research Topics For Thesis At Different
Appreciated 4 months ago, created a post with more than 5 votes. For C: How To Extracting Fastq Sequence For Given Fastq Ids And Fastq File
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Can We Have A Collection Of Interesting Research Topics For Thesis At Different
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Can We Have A Collection Of Interesting Research Topics For Thesis At Different
Appreciated 4 months ago, created a post with more than 5 votes. For How To Define Percent-Identity From A Cigar String/ A Bam/Sam File?
Appreciated 4 months ago, created a post with more than 5 votes. For How To Detect And Query Poly-Allelic Snps?

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