Moderator: Michael Dondrup

gravatar for Michael Dondrup
Reputation:
39,750
Status:
Trusted
Location:
Bergen, Norway
Website:
https://licebase.org/
Last seen:
3 minutes ago
Joined:
6 years, 11 months ago
Email:
m*******@gmail.com

 

PhD in bioinformatics. Currently Researcher at the Sea Lice Research Centre, responsible for LiceBase, an infrastructure for genomic resources of sea lice, and analysis of genomics data from emerging genomes.

Posts by Michael Dondrup

<prev • 4,028 results • page 1 of 403 • next >
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Comment: C: RNA-Seq And Genome Annotation file (GFF/GTF)
... Good you provided more information! Assuming we are talking about Zika virus (ssRNA virus), there is a reference genome here as a genbank file: https://www.ncbi.nlm.nih.gov/nuccore/NC_012532.1?report=gbwithparts&log$=seqview If you can't find a GFF/GTF file you can convert the Genbank file to G ...
written 3 hours ago by Michael Dondrup40k
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Comment: C: RNA-Seq And Genome Annotation file (GFF/GTF)
... What have you tried? Please provide a concrete example of your organism and setup. ...
written 4 hours ago by Michael Dondrup40k
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Comment: C: creating an MSA file for 20+ million reads whith non-directional sequences
... genomax is right, but in addition I wonder why you are having a reference sequence of 30bp. I therefore think you are trying to do something odd. ...
written 18 hours ago by Michael Dondrup40k
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Comment: C: how to perl module install
... Hello vigneshnivas09! We believe that this post does not fit the main topic of this site. Not a bioinformatics question. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a ...
written 18 hours ago by Michael Dondrup40k
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Comment: C: Illumina Short Reads Simulator
... Maybe time to close. ...
written 23 hours ago by Michael Dondrup40k
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Comment: C: Illumina Short Reads Simulator
... Then you should have found many similar questions. https://www.biostars.org/p/151501/ For example. Please do some research before posting. ...
written 23 hours ago by Michael Dondrup40k
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Comment: C: Illumina Short Reads Simulator
... What have you tried? Have you searched? ...
written 23 hours ago by Michael Dondrup40k
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Comment: C: How to plot "normalized read density" vs "insert size"
... Sometimes this happens if the the Add button is pressed twice, the Add process is in need of a semaphore preventing more than a single post per click. The delete option is found under "moderate". ...
written 1 day ago by Michael Dondrup40k
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Comment: C: gene expression heat map
... Hello hateprotoss! We believe that this post does not fit the main topic of this site. Closing this post as 'multiplicate' (duplicate implying only 2 ;). Suggesting to choose from one the 160 related threads, see my comment above, or otherwise make the question much more specific so we know what ...
written 2 days ago by Michael Dondrup40k
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Comment: C: gene expression heat map
... Please refer to any of these questions, many of these contain example code: https://www.biostars.org/t/heatmap/?sort=views&limit=all%20time&q= There are about 160 questions tagged heat map on Biostars, I believe that number is very sufficient. Most answers use R, but there many more overvi ...
written 2 days ago by Michael Dondrup40k

Latest awards to Michael Dondrup

Commentator 24 days ago, created a comment with at least 3 up-votes. For C: Why Don'T We Use Binary Format?
Scholar 6 weeks ago, created an answer that has been accepted. For A: In R, how do I apply regexes to specific parts of a string that contains a patte
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: Heat Map With Two Color Scales
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: Heat Map With Two Color Scales
Appreciated 9 weeks ago, created a post with more than 5 votes. For How To Define Percent-Identity From A Cigar String/ A Bam/Sam File?
Scholar 10 weeks ago, created an answer that has been accepted. For A: mirDeep2 using bowtie vs. bwa - why do more aligned reads yield less miRNA
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: How To Run Bfast In Cluster Computing
Scholar 11 weeks ago, created an answer that has been accepted. For A: mirDeep2 using bowtie vs. bwa - why do more aligned reads yield less miRNA
Teacher 12 weeks ago, created an answer with at least 3 up-votes. For A: How To Run Bfast In Cluster Computing
Scholar 12 weeks ago, created an answer that has been accepted. For A: Remove rows in a matrix containing Hamming distance less than a set value
Appreciated 12 weeks ago, created a post with more than 5 votes. For C: How To Extracting Fastq Sequence For Given Fastq Ids And Fastq File
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: How To Extracting Fastq Sequence For Given Fastq Ids And Fastq File
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Can We Have A Collection Of Interesting Research Topics For Thesis At Different
Appreciated 3 months ago, created a post with more than 5 votes. For C: How To Extracting Fastq Sequence For Given Fastq Ids And Fastq File
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Can We Have A Collection Of Interesting Research Topics For Thesis At Different
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Can We Have A Collection Of Interesting Research Topics For Thesis At Different
Appreciated 3 months ago, created a post with more than 5 votes. For How To Define Percent-Identity From A Cigar String/ A Bam/Sam File?
Appreciated 3 months ago, created a post with more than 5 votes. For How To Detect And Query Poly-Allelic Snps?
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Errors In A Bioperl Script, Please Help Me To Have A Check, Thanks In Advance!
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Rna-Seq Pipeline
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Rna-Seq Pipeline
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Rna-Seq Pipeline

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