Moderator: Fred Fleche

gravatar for Fred Fleche
Fred Fleche4.1k
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Location:
Paris, France
Website:
http://www.bioinformat...
Twitter:
fredericfleche
Last seen:
9 months, 2 weeks ago
Joined:
7 years, 6 months ago
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f**************@gmail.com

Bioinformatician @ Sanofi

Main interest is data integration of cancer related information.

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Posts by Fred Fleche

<prev • 198 results • page 1 of 20 • next >
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Comment: C: Retrieving only ENST ids linked to an ENSG ids using the Ensembl REST API
... Thanks for this nice workaround. Even if it would be nicer to have a lighter way to have these transcripts IDs. ...
written 3.2 years ago by Fred Fleche4.1k
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Comment: C: Retrieving only ENST ids linked to an ENSG ids using the Ensembl REST API
... Thanks for you answers. That's a pity that this simple feature is not available through the REST API. Do you know if improvement are planned concerning the REST API. ...
written 3.2 years ago by Fred Fleche4.1k
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Retrieving only ENST ids linked to an ENSG ids using the Ensembl REST API
... Hi, Let's say that I want to programmatically retrieve in json format the 4 Ensembl transcripts IDs that are linked to the Ensembl gene ENSG00000133703 (KRAS) that are listed on the following webpage : http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000133703;r=12:25357723-2540387 ...
rest ensembl api written 3.2 years ago by Fred Fleche4.1k • updated 3.2 years ago by Emily_Ensembl13k
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Comment: C: Discrimination Between Germline And Somatic Mutations In Tumor Without The Avail
... Thanks a lot for sharing your experience. Really appreciate. Fred ...
written 4.6 years ago by Fred Fleche4.1k
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Discrimination Between Germline And Somatic Mutations In Tumor Without The Availability Of The Normal Paired Sample
... Hi, Let's say that I get whole-exome-sequencing data file that has been created without the availability of a normal sample related to the tumor sample sequenced. Is there a way to make the disctinction bewteen germline and somatic variants. I was thinking of comparing the variants against the COSM ...
somatic mutation written 4.6 years ago by Fred Fleche4.1k • updated 4.6 years ago by Stefano Berri3.9k
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Comment: C: Quickest Way To Get Human Gene Symbols From Refseq Build 37
... Thanks a lot Pierre. In the meantime I was looking in the ftp directory at NCBI without finding a nice tab delimited file that would fit my needs. Very sincerely. Fred ...
written 4.6 years ago by Fred Fleche4.1k
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Quickest Way To Get Human Gene Symbols From Refseq Build 37
... Hello, I was wondering what is the quickest way to get a listing of the human Gene Symbols from Refseq Build 37. Thannks in advance for your suggestions. Fred ...
gene refseq human written 4.6 years ago by Fred Fleche4.1k • updated 10 months ago by Rashedul Islam160
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Answer: A: Getting Protein Information From Mrna Refseq Id
... So after looking into NCBI E-utilities I was able to get the protein information I was looking for using 3 of the 8 E-utilities : ESearch (to get the mRNA uid from the mRNA acc): this url : http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nucleotide&term=NM_004985 gave me an xml o ...
written 5.0 years ago by Fred Fleche4.1k
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Comment: C: Getting Protein Information From Mrna Refseq Id
... Hi Pierre, Thanks for your answer. Actually I am planning to do the svg using the Highcharts library but what I am really looking for is the protein related information using the mRNA refseq Id. May be through the E-utilities. So any url instance would be helpfull even if I am looking into it in the ...
written 5.0 years ago by Fred Fleche4.1k
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Getting Protein Information From Mrna Refseq Id
... Hello, I would like to create an SVG similar to the figure below whiche is from COSMIC. I would need the length of the protein and the start-end of the related protein domain. My input would be the the refseq mRNA ID. So I would like to know if it is feasible to get the protein related information ...
refseq protein written 5.0 years ago by Fred Fleche4.1k

Latest awards to Fred Fleche

Great Question 11 months ago, created a question with more than 5,000 views. For Problem To Understand Copy-Number Values Per Gene Provided By The Broad Institute
Appreciated 11 months ago, created a post with more than 5 votes. For C: Wrong Taxonomic Information On Ncbi
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Is It Possible To Get Uniprot Ft Features Without Using The Available Flat Files
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Web Resources To Find Cancer Indication Where A Given Gene Is Amplified
Good Question 3.2 years ago, asked a question that was upvoted at least 5 times. For How To Retrieve Human Proteins Sequence Containing A Given Domain
Popular Question 3.2 years ago, created a question with more than 1,000 views. For How To Get A List Of All The Genes On The Human Chromosome Y
Teacher 3.2 years ago, created an answer with at least 3 up-votes. For A: Database Of Databases?
Appreciated 3.2 years ago, created a post with more than 5 votes. For A: How To Get All The Mrna Or Protein Sequences In A Pathway For Fruitfly?
Popular Question 3.2 years ago, created a question with more than 1,000 views. For How To Retrieve Human Proteins Sequence Containing A Given Domain
Scholar 3.2 years ago, created an answer that has been accepted. For A: Identified Potential Non-Coding Rna, And Then?
Good Answer 3.2 years ago, created an answer that was upvoted at least 5 times. For A: How To Get All The Mrna Or Protein Sequences In A Pathway For Fruitfly?
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Quickest Way To Get Human Gene Symbols From Refseq Build 37
Teacher 3.2 years ago, created an answer with at least 3 up-votes. For A: Which Sites Are Useful To Find Or Advertise Masters And Graduate Programs In Bio
Appreciated 3.2 years ago, created a post with more than 5 votes. For C: Wrong Taxonomic Information On Ncbi
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Looking For A Database With Gene Expression Data For Monkey
Popular Question 3.2 years ago, created a question with more than 1,000 views. For How To Filter Affymetrix Probes Related To Murine Genes Encoding Membran Proteins
Popular Question 3.2 years ago, created a question with more than 1,000 views. For How To Retrieve Human Proteins Sequence Containing A Given Domain
Popular Question 3.3 years ago, created a question with more than 1,000 views. For How To Retrieve Human Proteins Sequence Containing A Given Domain
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Web Resources To Find Cancer Indication Where A Given Gene Is Amplified
Popular Question 3.4 years ago, created a question with more than 1,000 views. For How To Retrieve Human Proteins Sequence Containing A Given Domain
Guru 3.5 years ago, received more than 100 upvotes.
Student 3.5 years ago, asked a question with at least 3 up-votes. For Who Wants To Share Bookmarks Between Bioinformaticians

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