Moderator: Egon Willighagen
Egon Willighagen ♦ 5.2k
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Post-doc working on Open Data, Open Source, and Open Standards in cheminformatics, chemometrics and bioinformatics. Projects I work on include the CDK, Bioclipse, WikiPathways, the Blue Obelisk Data Repository, and much more.
Posts by Egon Willighagen
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Job:
Scientific programmer supporting COVID-19 WikiPathways project (Maastricht, The Netherlands, Europe)
... We are looking for a scientific programmer interested in joining the fight against COVID-19 and supporting us within the project “WikiPathways as a platform for COVID-19 pathway models” recently granted by the Dutch ZonMw funds. We focus on identifying underlying mechanisms explaining the difference ...
written 4 weeks ago by
Egon Willighagen ♦ 5.2k
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... Some pointers:
- http://www.glycanstructure.org/
- https://www.genome.jp/kegg/glycan/
- https://www.ncbi.nlm.nih.gov/glycans/
- https://glytoucan.org/ ...
written 7 weeks ago by
Egon Willighagen ♦ 5.2k
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... For an overview of R packages, check out this open access book: https://rformassspectrometry.github.io/metaRbolomics-book/
For ID mapping, check out [BridgeDbR][1].
[1]: https://www.bioconductor.org/packages/release/bioc/html/BridgeDbR.html ...
written 7 weeks ago by
Egon Willighagen ♦ 5.2k
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... I've asked Evan Bolton and he [reminded][1] me that when [PubChem RDF was designed][2] that because of the size of PubChem, every triple constitutes a significant amount of network traffic, so a minimal model was created.
[1]: https://twitter.com/EvanBolton/status/1290686243840327681
[2]: http ...
written 7 weeks ago by
Egon Willighagen ♦ 5.2k
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... I actually do not remember why we don't have a rdf:type to give the type, and only use it to link it to, for example, ChEBI [1]. But compounds with CIDs but no rdf:type can still be used: they still have a SMILES, InChI, etc.
0. Fu, G., Batchelor, C., Dumontier, M. et al. PubChemRDF: towards the se ...
written 7 weeks ago by
Egon Willighagen ♦ 5.2k
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... We are looking for a postdoctoral researcher interested in joining the fight against COVID-19 and contributing to the project “WikiPathways as a platform for COVID-19 pathway models” recently granted by the [Dutch ZonMw funds][1]. We focus on identifying underlying mechanisms explaining the differen ...
written 7 weeks ago by
Egon Willighagen ♦ 5.2k
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... Link to vacancy page will be added tomorrow. ...
written 8 months ago by
Egon Willighagen ♦ 5.2k
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Job:
Junior researcher or post-doctoral researcher for the Food Nutrition Security Cloud, Maastricht/NL
... The research position is part of the European FNS (Food Nutrition Security)-Cloud project. FNS-Cloud (http://www.fns-cloud.eu/) will overcome fragmentation problems by integrating existing FNS data, which is essential for high-end, pan-European FNS research, addressing FNS, diet, health, and consume ...
written 8 months ago by
Egon Willighagen ♦ 5.2k
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... Since you mention metabolomics, you can also have a look at this recent paper: https://www.mdpi.com/2218-1989/9/10/200 ...
written 9 months ago by
Egon Willighagen ♦ 5.2k
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... Nanotechnologies are increasing our ability to improve our quality of life. Whether is it innovative medicine, ingredients in new beneficial products, or reducing the cost of smartphones, nanomaterials have found their way into our society. However, like any chemical of natural or synthetic source, ...
written 10 months ago by
Egon Willighagen ♦ 5.2k
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