Moderator: Egon Willighagen

gravatar for Egon Willighagen
Reputation:
5,260
Status:
Trusted
Location:
Maastricht
Website:
http://egonw.github.com/
Twitter:
egonwillighagen
Scholar ID:
Google Scholar Page
Last seen:
1 day, 11 hours ago
Joined:
10 years, 9 months ago
Email:
e***************@gmail.com

Post-doc working on Open Data, Open Source, and Open Standards in cheminformatics, chemometrics and bioinformatics. Projects I work on include the CDK, Bioclipse, WikiPathways, the Blue Obelisk Data Repository, and much more.

ORCID: https://orcid.org/0000-0001-7542-0286

Posts by Egon Willighagen

<prev • 396 results • page 1 of 40 • next >
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Comment: C: Obtaining directionality of pathways
... Not really an answer, just a pointer: https://bioconductor.org/packages/release/bioc/html/rWikiPathways.html ...
written 1 day ago by Egon Willighagen5.3k
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Comment: C: How to convert metabolite name/KEGG compound ID to gene ID?
... Can you explain your question? Metabolites and genes are different things. You cannot convert their identifiers. ...
written 8 weeks ago by Egon Willighagen5.3k
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Comment: C: How to analysis metabolomics data with pathway? Why library doesn't require my d
... What does your data look like? Do you have metabolite identifiers? From which database? ...
written 8 weeks ago by Egon Willighagen5.3k
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Job: Scientific programmer supporting COVID-19 WikiPathways project (Maastricht, The Netherlands, Europe)
... We are looking for a scientific programmer interested in joining the fight against COVID-19 and supporting us within the project “WikiPathways as a platform for COVID-19 pathway models” recently granted by the Dutch ZonMw funds. We focus on identifying underlying mechanisms explaining the difference ...
java job R pathvisio wikipathways xml written 3 months ago by Egon Willighagen5.3k
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Answer: A: cheminformatics and molecular docking
... Some pointers: - http://www.glycanstructure.org/ - https://www.genome.jp/kegg/glycan/ - https://www.ncbi.nlm.nih.gov/glycans/ - https://glytoucan.org/ ...
written 3 months ago by Egon Willighagen5.3k
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Answer: C: pathway analysis for metabolites
... For an overview of R packages, check out this open access book: https://rformassspectrometry.github.io/metaRbolomics-book/ For ID mapping, check out [BridgeDbR][1]. [1]: https://www.bioconductor.org/packages/release/bioc/html/BridgeDbR.html ...
written 3 months ago by Egon Willighagen5.3k
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Answer: A: PubChem RDF subjects doesn't have rdf:type predicates which doesn't make sense
... I've asked Evan Bolton and he [reminded][1] me that when [PubChem RDF was designed][2] that because of the size of PubChem, every triple constitutes a significant amount of network traffic, so a minimal model was created. [1]: https://twitter.com/EvanBolton/status/1290686243840327681 [2]: http ...
written 4 months ago by Egon Willighagen5.3k
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Answer: A: PubChem RDF subjects doesn't have rdf:type predicates which doesn't make sense
... I actually do not remember why we don't have a rdf:type to give the type, and only use it to link it to, for example, ChEBI [1]. But compounds with CIDs but no rdf:type can still be used: they still have a SMILES, InChI, etc. 0. Fu, G., Batchelor, C., Dumontier, M. et al. PubChemRDF: towards the se ...
written 4 months ago by Egon Willighagen5.3k
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Job: Postdoctoral researcher on COVID-19 molecular pathways in Maastricht / Netherlands
... We are looking for a postdoctoral researcher interested in joining the fight against COVID-19 and contributing to the project “WikiPathways as a platform for COVID-19 pathway models” recently granted by the [Dutch ZonMw funds][1]. We focus on identifying underlying mechanisms explaining the differen ...
postdoc covid-19 wikipathways netherlands job written 4 months ago by Egon Willighagen5.3k
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Comment: C: Junior researcher or post-doctoral researcher for the Food Nutrition Security Cl
... Link to vacancy page will be added tomorrow. ...
written 10 months ago by Egon Willighagen5.3k

Latest awards to Egon Willighagen

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