Admin: Pierre Lindenbaum

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France/Nantes/Institut du Thorax - INSERM UMR1087
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yokofakun
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Posts by Pierre Lindenbaum

<prev • 8,477 results • page 1 of 848 • next >
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Answer: C: bwa job - error with file size
... what is your filesystem? fat32 ? you cannot write a file with size > 4 G : https://en.wikipedia.org/wiki/File_Allocation_Table#FAT32 > The maximum possible size for a file on a FAT32 volume is 4 GiB minus 1 byte or 4,294,967,295 (232 − 1) bytes. ...
written 3 hours ago by Pierre Lindenbaum120k
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Comment: C: Alignement of 2 fast files already aligned
... https://www.biostars.org/p/75548/ ...
written 17 hours ago by Pierre Lindenbaum120k
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Comment: C: Not a directory problem in ubuntu
... Hello thulani.m.hewavithana! We believe that this post does not fit the main topic of this site. not related to bioinformatics. just a basic linux problem. Furthermore, the error message is clear. For this reason we have closed your question. This allows us to keep the site focused on the topic ...
written 21 hours ago by Pierre Lindenbaum120k
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Answer: A: List of tools that use BED as input
... using **elixir**: [https://bio.tools/t?inputDataFormatID=%22format_3003%22][1] [1]: https://bio.tools/t?inputDataFormatID=%22format_3003%22 ...
written 22 hours ago by Pierre Lindenbaum120k
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Comment: C: Not-Merged Reads What to do?
... Hello las996! It appears that your post has been cross-posted to another site: http://seqanswers.com/forums/showthread.php?t=89795 This is typically not recommended as it runs the risk of annoying people in both communities. ...
written 1 day ago by Pierre Lindenbaum120k
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Answer: A: Automating the creation of IGV style histogram coverage maps
... I quickly wrote something like this using nextflow+ (samtools depth+R) a few weeks ago: https://gist.github.com/lindenb/0c3a0808adb3ba2e5287119e49c91051 I imagine I should add another param to 'smooth' the curves. https://twitter.com/yokofakun/status/1135879799287799814 ...
written 1 day ago by Pierre Lindenbaum120k
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Comment: C: GATK Error Message: Invalid argument value 'RealignerTargetCreator at position'
... show us the command line. ...
written 2 days ago by Pierre Lindenbaum120k
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Answer: A: What is the "-" option of samtools?
... '-' just means `stdin/standard input` > http://www.htslib.org/doc/samtools-1.2.html > > Samtools is designed to work on a stream. It regards an input file `-` as the standard input (stdin) and an output file `-` as the standard output (stdout). ...
written 2 days ago by Pierre Lindenbaum120k
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Comment: C: Removing homozygous reference genotypes from multi-sample vcf file
... as far as I undersand OP don't want ANY HOM_REF sample in the row. ...
written 3 days ago by Pierre Lindenbaum120k
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Comment: C: Removing homozygous reference genotypes from multi-sample vcf file
... I updated my answer. ...
written 3 days ago by Pierre Lindenbaum120k

Latest awards to Pierre Lindenbaum

Teacher 6 hours ago, created an answer with at least 3 up-votes. For A: Ncbi Tax Id For Draft Bacteria Genomes
Appreciated 20 hours ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Scholar 2 days ago, created an answer that has been accepted. For C: BED file : error in naming chromosome's column
Popular Question 2 days ago, created a question with more than 1,000 views. For samtools 1.0 'index' : CSI index vs BAI index ?
Teacher 3 days ago, created an answer with at least 3 up-votes. For A: Ncbi Tax Id For Draft Bacteria Genomes
Scholar 3 days ago, created an answer that has been accepted. For C: BED file : error in naming chromosome's column
Teacher 5 days ago, created an answer with at least 3 up-votes. For A: Ncbi Tax Id For Draft Bacteria Genomes
Teacher 5 days ago, created an answer with at least 3 up-votes. For A: Ncbi Tax Id For Draft Bacteria Genomes
Teacher 7 days ago, created an answer with at least 3 up-votes. For A: Ncbi Tax Id For Draft Bacteria Genomes
Great Question 7 days ago, created a question with more than 5,000 views. For Mapping Snps To Pathways
Appreciated 8 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Great Question 10 days ago, created a question with more than 5,000 views. For Mapping Snps To Pathways
Teacher 11 days ago, created an answer with at least 3 up-votes. For A: Ncbi Tax Id For Draft Bacteria Genomes
Appreciated 14 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Teacher 14 days ago, created an answer with at least 3 up-votes. For A: Search Motif In Raw Reads
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Scholar 15 days ago, created an answer that has been accepted. For C: BED file : error in naming chromosome's column
Scholar 20 days ago, created an answer that has been accepted. For A: Why do we need a .fai file and a .dict file of the reference during alignment an
Scholar 20 days ago, created an answer that has been accepted. For C: BED file : error in naming chromosome's column
Appreciated 20 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Scholar 20 days ago, created an answer that has been accepted. For C: BED file : error in naming chromosome's column
Scholar 20 days ago, created an answer that has been accepted. For C: BED file : error in naming chromosome's column
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