Admin: Pierre Lindenbaum
Pierre Lindenbaum ♦ 127k
- Reputation:
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- France/Nantes/Institut du Thorax - INSERM UMR1087
- Website:
- http://plindenbaum.blo...
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- Google Scholar Page
- Last seen:
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- Joined:
- 10 years, 1 month ago
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Posts by Pierre Lindenbaum
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Hello shangzhenhua08!
Questions similar to yours can already be found at:
snps causing protein change
We have closed your question to allow us to keep similar content in the same thread.
If you disagree with this please tell us why in a reply below. We'll be happy to talk about ...
written 8 hours ago by
Pierre Lindenbaum ♦ 127k
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Comment:
C: snps causing protein change
... if my previous answer was of help ( https://www.biostars.org/p/242104/ ) , you should validate+close it : (green mark on the left of my answer) ...
written 11 hours ago by
Pierre Lindenbaum ♦ 127k
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Comment:
C: snps causing protein change
... Hello shangzhenhua08!
We believe that this post does not fit the main topic of this site.
this question has been asked many times. eg: https://www.biostars.org/p/97524/ search this site for VEP and/or SNPEFF
For this reason we have closed your question. This allows us to keep the site focused
on ...
written 11 hours ago by
Pierre Lindenbaum ♦ 127k
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... use `bcftools merge` to combine your vcf at this position and extract the INFO/AF field with `bcftools query` ...
written 1 day ago by
Pierre Lindenbaum ♦ 127k
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41
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... duplicate: https://www.biostars.org/p/213008/ ...
written 2 days ago by
Pierre Lindenbaum ♦ 127k
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75
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Comment:
C: Snap aligner to Igv?
... > Yes, but like this: MN908947.3_Here_is_the_ref_genome_name... This could be the problem
I don't understand your answer, but try to write the correct contig name in IGV.... ...
written 4 days ago by
Pierre Lindenbaum ♦ 127k
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75
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Comment:
C: Snap aligner to Igv?
... do you see any read with `samtools view` in the region you're looking with IGV ? ...
written 4 days ago by
Pierre Lindenbaum ♦ 127k
0
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2
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71
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... using uniprot+SPARQL: https://sparql.uniprot.org/
PREFIX xsd:
PREFIX uniprotkb:
PREFIX uberon:
PREFIX taxon:
PREFIX sp:
PREFIX slm:
PREFIX skos:
PREFIX sio:
PREFIX sh:
PREFIX schema:
PREFIX rh:
PREFIX rdfs:
PREFIX rdf:
PREFIX pubm ...
written 4 days ago by
Pierre Lindenbaum ♦ 127k
0
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1
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103
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1
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... see https://www.biostars.org/p/5403/ ...
written 5 days ago by
Pierre Lindenbaum ♦ 127k
1
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142
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... awk '/^>/ {printf(">%s_%s\n",substr(FILENAME,1,length(FILENAME)-3),substr($1,2));next;} {print}' *.txt ...
written 5 days ago by
Pierre Lindenbaum ♦ 127k
Latest awards to Pierre Lindenbaum
Appreciated
2 days ago,
created a post with more than 5 votes.
For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
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4 days ago,
created a comment with at least 3 up-votes.
For C: BWA-MEM read groups usage
Good Answer
7 days ago,
created an answer that was upvoted at least 5 times.
For A: Plotting Density Of Snps On Chromosomes
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7 days ago,
created a post with more than 5 votes.
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8 days ago,
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For A: Extract coverage information from IGV
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For C: Introduction To Genomics For Non-Biologists Willing To Become Bioinformaticians
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For A: Extract coverage information from IGV
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For A: Extract coverage information from IGV
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16 days ago,
created an answer with at least 3 up-votes.
For A: Plotting Density Of Snps On Chromosomes
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16 days ago,
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For A: Extract coverage information from IGV
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16 days ago,
created an answer that has been accepted.
For A: How Complex It Is To Analyze Ngs Data ?
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17 days ago,
created an answer that was upvoted at least 5 times.
For A: Plotting Density Of Snps On Chromosomes
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22 days ago,
created a post with more than 5 votes.
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24 days ago,
created an answer that was upvoted at least 5 times.
For A: How To Merge Overlapping Two Or More Dna Sequence?
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26 days ago,
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For A: Extract coverage information from IGV
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27 days ago,
created an answer that has been accepted.
For A: Extract coverage information from IGV
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created a post with more than 5 votes.
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28 days ago,
created an answer that has been accepted.
For A: Extract coverage information from IGV
Scholar
29 days ago,
created an answer that has been accepted.
For A: Extract coverage information from IGV
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29 days ago,
created a post with more than 5 votes.
For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
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4 weeks ago,
created an answer that has been accepted.
For A: Extract coverage information from IGV
Scholar
4 weeks ago,
created an answer that has been accepted.
For A: Extract coverage information from IGV
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