Admin: Pierre Lindenbaum

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France/Nantes/Institut du Thorax - INSERM UMR1087
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Posts by Pierre Lindenbaum

<prev • 9,097 results • page 1 of 910 • next >
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Comment: C: how to find out protein changes from SNPs
... Hello shangzhenhua08! Questions similar to yours can already be found at: snps causing protein change We have closed your question to allow us to keep similar content in the same thread. If you disagree with this please tell us why in a reply below. We'll be happy to talk about ...
written 8 hours ago by Pierre Lindenbaum127k
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Comment: C: snps causing protein change
... if my previous answer was of help ( https://www.biostars.org/p/242104/ ) , you should validate+close it : (green mark on the left of my answer) ...
written 11 hours ago by Pierre Lindenbaum127k
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Comment: C: snps causing protein change
... Hello shangzhenhua08! We believe that this post does not fit the main topic of this site. this question has been asked many times. eg: https://www.biostars.org/p/97524/ search this site for VEP and/or SNPEFF For this reason we have closed your question. This allows us to keep the site focused on ...
written 11 hours ago by Pierre Lindenbaum127k
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Answer: A: Calculate allele frequency from many VCF files in specific locus
... use `bcftools merge` to combine your vcf at this position and extract the INFO/AF field with `bcftools query` ...
written 1 day ago by Pierre Lindenbaum127k
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Comment: C: How to convert mRNA ID (NM_XXXXX) type IDs to Gene Symbol/Names?
... duplicate: https://www.biostars.org/p/213008/ ...
written 2 days ago by Pierre Lindenbaum127k
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Comment: C: Snap aligner to Igv?
... > Yes, but like this: MN908947.3_Here_is_the_ref_genome_name... This could be the problem I don't understand your answer, but try to write the correct contig name in IGV.... ...
written 4 days ago by Pierre Lindenbaum127k
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Comment: C: Snap aligner to Igv?
... do you see any read with `samtools view` in the region you're looking with IGV ? ...
written 4 days ago by Pierre Lindenbaum127k
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Answer: A: How to identify ZNFs from a gene list?
... using uniprot+SPARQL: https://sparql.uniprot.org/ PREFIX xsd: PREFIX uniprotkb: PREFIX uberon: PREFIX taxon: PREFIX sp: PREFIX slm: PREFIX skos: PREFIX sio: PREFIX sh: PREFIX schema: PREFIX rh: PREFIX rdfs: PREFIX rdf: PREFIX pubm ...
written 4 days ago by Pierre Lindenbaum127k
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Comment: C: Extract protein files from nucleotide accession numbers
... see https://www.biostars.org/p/5403/ ...
written 5 days ago by Pierre Lindenbaum127k
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Answer: A: Batch rename protein fasta headers
... awk '/^>/ {printf(">%s_%s\n",substr(FILENAME,1,length(FILENAME)-3),substr($1,2));next;} {print}' *.txt ...
written 5 days ago by Pierre Lindenbaum127k

Latest awards to Pierre Lindenbaum

Appreciated 2 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Commentator 4 days ago, created a comment with at least 3 up-votes. For C: BWA-MEM read groups usage
Good Answer 7 days ago, created an answer that was upvoted at least 5 times. For A: Plotting Density Of Snps On Chromosomes
Appreciated 7 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Scholar 8 days ago, created an answer that has been accepted. For A: Extract coverage information from IGV
Commentator 12 days ago, created a comment with at least 3 up-votes. For C: Introduction To Genomics For Non-Biologists Willing To Become Bioinformaticians
Scholar 12 days ago, created an answer that has been accepted. For A: Extract coverage information from IGV
Scholar 12 days ago, created an answer that has been accepted. For A: Extract coverage information from IGV
Teacher 16 days ago, created an answer with at least 3 up-votes. For A: Plotting Density Of Snps On Chromosomes
Scholar 16 days ago, created an answer that has been accepted. For A: Extract coverage information from IGV
Scholar 16 days ago, created an answer that has been accepted. For A: How Complex It Is To Analyze Ngs Data ?
Good Answer 17 days ago, created an answer that was upvoted at least 5 times. For A: Plotting Density Of Snps On Chromosomes
Appreciated 22 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Good Answer 24 days ago, created an answer that was upvoted at least 5 times. For A: How To Merge Overlapping Two Or More Dna Sequence?
Scholar 26 days ago, created an answer that has been accepted. For A: Extract coverage information from IGV
Teacher 27 days ago, created an answer with at least 3 up-votes. For A: Annotate A Vcf File
Scholar 27 days ago, created an answer that has been accepted. For A: Extract coverage information from IGV
Teacher 28 days ago, created an answer with at least 3 up-votes. For A: Annotate A Vcf File
Appreciated 28 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Scholar 28 days ago, created an answer that has been accepted. For A: Extract coverage information from IGV
Scholar 29 days ago, created an answer that has been accepted. For A: Extract coverage information from IGV
Appreciated 29 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Annotate A Vcf File
Scholar 4 weeks ago, created an answer that has been accepted. For A: Extract coverage information from IGV
Scholar 4 weeks ago, created an answer that has been accepted. For A: Extract coverage information from IGV

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