Admin: Pierre Lindenbaum
Pierre Lindenbaum ♦ 120k
- Reputation:
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- France/Nantes/Institut du Thorax - INSERM UMR1087
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- http://plindenbaum.blo...
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Posts by Pierre Lindenbaum
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... what is your filesystem? fat32 ? you cannot write a file with size > 4 G : https://en.wikipedia.org/wiki/File_Allocation_Table#FAT32
> The maximum possible size for a file on a FAT32 volume is 4 GiB minus 1 byte or 4,294,967,295 (232 − 1) bytes. ...
written 3 hours ago by
Pierre Lindenbaum ♦ 120k
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... https://www.biostars.org/p/75548/ ...
written 17 hours ago by
Pierre Lindenbaum ♦ 120k
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40
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Comment:
C: Not a directory problem in ubuntu
... Hello thulani.m.hewavithana!
We believe that this post does not fit the main topic of this site.
not related to bioinformatics. just a basic linux problem. Furthermore, the error message is clear.
For this reason we have closed your question. This allows us to keep the site focused
on the topic ...
written 21 hours ago by
Pierre Lindenbaum ♦ 120k
2
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... using **elixir**: [https://bio.tools/t?inputDataFormatID=%22format_3003%22][1]
[1]: https://bio.tools/t?inputDataFormatID=%22format_3003%22 ...
written 22 hours ago by
Pierre Lindenbaum ♦ 120k
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Comment:
C: Not-Merged Reads What to do?
... Hello las996!
It appears that your post has been cross-posted to another site: http://seqanswers.com/forums/showthread.php?t=89795
This is typically not recommended as it runs the risk of annoying people in both communities.
...
written 1 day ago by
Pierre Lindenbaum ♦ 120k
1
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... I quickly wrote something like this using nextflow+ (samtools depth+R) a few weeks ago:
https://gist.github.com/lindenb/0c3a0808adb3ba2e5287119e49c91051
I imagine I should add another param to 'smooth' the curves.
https://twitter.com/yokofakun/status/1135879799287799814
...
written 1 day ago by
Pierre Lindenbaum ♦ 120k
0
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1
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58
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1
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... show us the command line. ...
written 2 days ago by
Pierre Lindenbaum ♦ 120k
2
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1
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105
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... '-' just means `stdin/standard input`
> http://www.htslib.org/doc/samtools-1.2.html
>
> Samtools is designed to work on a stream. It regards an input file `-` as the standard input (stdin) and an output file `-` as the standard output (stdout). ...
written 2 days ago by
Pierre Lindenbaum ♦ 120k
0
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3
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136
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3
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... as far as I undersand OP don't want ANY HOM_REF sample in the row. ...
written 3 days ago by
Pierre Lindenbaum ♦ 120k
0
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3
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136
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3
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... I updated my answer. ...
written 3 days ago by
Pierre Lindenbaum ♦ 120k
Latest awards to Pierre Lindenbaum
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For C: BED file : error in naming chromosome's column
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For samtools 1.0 'index' : CSI index vs BAI index ?
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