Moderator: zx8754

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zx87543.8k
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"If you torture the data long enough, it will confess." - Ronald Coase

Posts by zx8754

<prev • 381 results • page 1 of 39 • next >
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Answer: A: Comparing 2 Columns at once
... Taking advantage of recycling in R, we can do as below: # data df1 <- read.table(text = "V1 V2 V3 V4 V5 V6 A A C C G G A G T T C G G C T A A C", header = TRUE, stringsAsFactors = FALSE) # compare odd columns with even using recycling, then convert to n ...
written 21 days ago by zx87543.8k
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Comment: C: SNP Proxy dataset
... We can download the data from haploreg - http://archive.broadinstitute.org/mammals/haploreg/data/ ...
written 8 months ago by zx87543.8k
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Comment: A: SNP Proxy dataset
... Try [LDlink][1], [haploreg][2] ? [1]: https://analysistools.nci.nih.gov/LDlink/ [2]: http://archive.broadinstitute.org/mammals/haploreg/haploreg.php ...
written 8 months ago by zx87543.8k
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Comment: C: What is the difference between counts and expression level?
... Why is this tagged with "R" ? ...
written 8 months ago by zx87543.8k
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Comment: C: parse data in excel or using perl
... - Excel, read about [VLOOKUP][1] - [R][2], use `merge` or `%in%` then `paste` In any case avoid using Excel for bioinformatics, and please update/edit your post with more clarification. [1]: https://www.techonthenet.com/excel/formulas/vlookup.php [2]: https://cran.r-project.org/ ...
written 8 months ago by zx87543.8k
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Comment: C: Post Imputation Analysis
... Hello mandar.bobade60! We believe that this post does not fit the main topic of this site. https://www.biostars.org/p/6476/ For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why i ...
written 9 months ago by zx87543.8k
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Comment: C: R:how to read bed file with identical Famliy ID by read.plink
... Read the fam file, and paste 1:n to FID column, write it out as new updated fam. Then use read.plink. ...
written 9 months ago by zx87543.8k
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Comment: C: StackExchange/Area51 bioinformatics is back
... Just want to highlight the best bit from your comment, which BioStar lacks: > **In the process I learned how to learn.** Essentially SO is about ["Rubber Duck Problem Solving"][1] , makes the user to think hard about the problem, before wasting anyone's time. [1]: https://blog.codinghorror. ...
written 9 months ago by zx87543.8k
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Comment: C: downloading protein sequences
... What have you tried? Maybe see this post: https://cran.r-project.org/web/packages/biomartr/vignettes/Sequence_Retrieval.html ...
written 10 months ago by zx87543.8k
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Comment: C: How to convert SNP genotype data to numerical data?
... Please provide link to the software webpage/manual. Convert using what tool? How big is the data? What have you tried? ...
written 10 months ago by zx87543.8k

Latest awards to zx8754

Great Question 29 days ago, created a question with more than 5,000 views. For Snprelate: A Toolset For Relatedness And Principal Component Analysis Of Snp Data
Commentator 9 weeks ago, created a comment with at least 3 up-votes. For C: Quickest Way To Get Human Gene Symbols From Refseq Build 37
Popular Question 3 months ago, created a question with more than 1,000 views. For Access Haploreg programmatically
Popular Question 6 months ago, created a question with more than 1,000 views. For Bioinformatician - Molecular Diagnostics - London
Commentator 9 months ago, created a comment with at least 3 up-votes. For C: Quickest Way To Get Human Gene Symbols From Refseq Build 37
Appreciated 12 months ago, created a post with more than 5 votes. For A: Asking The Developers Before Asking Biostars
Good Answer 13 months ago, created an answer that was upvoted at least 5 times. For A: specific string extraction use excel, R or Python
Appreciated 13 months ago, created a post with more than 5 votes. For A: Asking The Developers Before Asking Biostars
Scholar 13 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Asking The Developers Before Asking Biostars
Commentator 13 months ago, created a comment with at least 3 up-votes. For C: Quickest Way To Get Human Gene Symbols From Refseq Build 37
Scholar 14 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
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