Moderator: zx8754

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zx87545.0k
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"If you torture the data long enough, it will confess." - Ronald Coase

Posts by zx8754

<prev • 548 results • page 1 of 55 • next >
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Comment: C: Extracting gene ID of overlapping peaks between different Chip-seqs
... I see, we are getting error because the length of sets are different. Maybe try this: write.table(stack(genes), "overlap.txt") Or to get list of overlapped genes, try: Reduce(intersect, genes) If these are not what you need, please provide expected output. ...
written 2 days ago by zx87545.0k
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Comment: C: Tools to calculate binned Dxy?
... Regarding "staying informed", follow Stephen Turner: - http://www.gettinggeneticsdone.com/2017/02/staying-current-in-bioinformatics-genomics-2017.html ...
written 2 days ago by zx87545.0k
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Comment: C: Extracting gene ID of overlapping peaks between different Chip-seqs
... No need to call *data.frame* twice, this should do: `df4 <- data.frame(genes)`, please provide example output of `head(df4)` or `str(df4)`. Just adding ".xls" doesn't make it Excel file, it will still output as text file. I am guessing `write.csv(df4, "overlap.csv")` should work. ...
written 2 days ago by zx87545.0k
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Comment: C: Which protein database source you prefer?
... Hello Whoknows! We believe that this post does not fit the main topic of this site. Too broad/unclear For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a reply below, we'll ...
written 3 days ago by zx87545.0k
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Comment: C: CHIPseeker error now
... It is a good idea to Google your error/warning messages, if you did the search then you would see that there is an issue at GitHub with a solution. - https://github.com/GuangchuangYu/ChIPseeker/issues/66 > Seems like the problem was the chromosome column being labelled (1 instead of chr1) Fixe ...
written 3 days ago by zx87545.0k
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Comment: C: Replace symbols in R table
... How is this different from my answer? ...
written 4 days ago by zx87545.0k
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Comment: C: Replace symbols in R table
... Moved your post to an answer, you might want to clean up your above comments, or edit them in into this post. ...
written 5 days ago by zx87545.0k
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Comment: C: How to build a Risk score formula using gene expression from cox regression for
... Didn't read the article, but it looks like a simple formula, multiply each expression with some weight then sum all. ...
written 6 days ago by zx87545.0k
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Comment: C: Replace symbols in R table
... Edited my answer, see if it works. ...
written 6 days ago by zx87545.0k
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Comment: C: Replace symbols in R table
... Provide reproducible example input data, and expected output. ...
written 6 days ago by zx87545.0k

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