Moderator: zx8754

gravatar for zx8754
zx87549.9k
Reputation:
9,940
Status:
Trusted
Location:
London
Website:
http://www.linkedin.co...
Twitter:
zx8754
Scholar ID:
Google Scholar Page
Last seen:
an hour ago
Joined:
9 years ago
Email:
z*****@gmail.com

"If you torture the data long enough, it will confess." - Ronald Coase

Posts by zx8754

<prev • 1,184 results • page 1 of 119 • next >
0
votes
0
answers
30
views
0
answers
Comment: C: AssertionError: not all umis are the same length(!): 4 - 5
... Posted at GitHub and answered by the developers: - https://github.com/CGATOxford/UMI-tools/issues/461 ...
written 3 hours ago by zx87549.9k • updated 3 hours ago by ATpoint46k
1
vote
0
answers
49
views
0
answers
Comment: C: merging/concatenating of two CSV files with different row and column names in r
... See related SO post: - [How to join (merge) data frames (inner, outer, left, right)](https://stackoverflow.com/q/1299871/680068) ...
written 1 day ago by zx87549.9k
0
votes
0
answers
35
views
0
answers
Comment: C: [PLINK] Error: Duplicate ID when running an --update-ids
... Hard to guess without seeing your `Project1.fam` file and `UpdateIDs` file. ...
written 1 day ago by zx87549.9k
1
vote
0
answers
125
views
0
answers
Comment: C: Survminer DataFrame creation
... Package comes with example inputs, see the Vignette, try the examples, https://cran.r-project.org/web/packages/survminer/vignettes/Informative_Survival_Plots.html ...
written 2 days ago by zx87549.9k
0
votes
1
answer
209
views
1
answers
Answer: C: Trying to get sequence using sequinr generates error "Error in readLines(socket,
... [Google says](http://lists.r-forge.r-project.org/pipermail/seqinr-forum/2019q1/000273.html), try to increase the *timeout*: choosebank("genbank", timeout = 20) ...
written 16 days ago by zx87549.9k
0
votes
0
answers
100
views
0
answers
Comment: C: How to split .bed file in R
... See related R solutions at StackOverflow - [Split up a dataframe by number of rows](https://stackoverflow.com/q/7060272/680068) ...
written 17 days ago by zx87549.9k
1
vote
0
answers
99
views
0
answers
Comment: C: Error attaching phenotype in PLINK (fewer tokens than expected)
... I think you need space or tab separated file as *pheno* file, not comma, see [pheno manual](https://www.cog-genomics.org/plink/1.9/input#pheno): > --pheno causes phenotype values to be read from the 3rd column of the specified space- or tab-delimited file, ...
written 17 days ago by zx87549.9k
1
vote
1
answer
67
views
1
answers
Answer: C: R error: could not find function "makeTxDbFromUCSC"
... Did you load the library? library(GenomicFeatures) See possible solutions at SO: - [Error: could not find function … in R](https://stackoverflow.com/q/7027288/680068) ...
written 17 days ago by zx87549.9k
1
vote
0
answers
134
views
0
answers
Comment: C: how to plot PCA figure
... On [Page 16 of Genesis manual](http://www.bioinf.wits.ac.za/software/genesis/Genesis.pdf), they describe the expected input. It is a reformatted version of output from *SNPRelate* **R** package. How does your input data looks like? Try to reformat it to match with the manual and test. ...
written 29 days ago by zx87549.9k
0
votes
0
answers
140
views
0
answers
Comment: C: Meta-analysis of two datasets.
... **liftOver** might be relevant, see: - https://genome.ucsc.edu/cgi-bin/hgLiftOver ...
written 6 weeks ago by zx87549.9k

Latest awards to zx8754

Scholar 16 days ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?
Popular Question 20 days ago, created a question with more than 1,000 views. For Bioinformatician - Molecular Diagnostics - London
Scholar 7 weeks ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?
Scholar 8 weeks ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Asking The Developers Before Asking Biostars
Good Answer 11 weeks ago, created an answer that was upvoted at least 5 times. For A: specific string extraction use excel, R or Python
Appreciated 11 weeks ago, created a post with more than 5 votes. For A: Asking The Developers Before Asking Biostars
Scholar 3 months ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Asking The Developers Before Asking Biostars
Scholar 4 months ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?
Scholar 5 months ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Asking The Developers Before Asking Biostars
Scholar 5 months ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Asking The Developers Before Asking Biostars
Scholar 5 months ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?
Scholar 6 months ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Asking The Developers Before Asking Biostars
Scholar 6 months ago, created an answer that has been accepted. For A: How to name column header for first column ?
Scholar 6 months ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Asking The Developers Before Asking Biostars
Scholar 7 months ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Asking The Developers Before Asking Biostars
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Asking The Developers Before Asking Biostars
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Asking The Developers Before Asking Biostars
Scholar 7 months ago, created an answer that has been accepted. For C: How to calculate r-squared with Haploview from different sources?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2702 users visited in the last hour
_